Ryk (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 8 | 112,298,158 - 112,370,912 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 8 | 112,298,369 - 112,370,908 (+) | Ensembl | | | | GRCr8 | mRatBN7.2 | 8 | 103,419,338 - 103,492,083 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 8 | 103,419,275 - 103,491,698 (+) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 8 | 109,082,525 - 109,154,762 (+) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 8 | 107,281,677 - 107,353,924 (+) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 8 | 105,124,370 - 105,196,606 (+) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 8 | 111,326,339 - 111,398,640 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 8 | 111,326,433 - 111,397,867 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 8 | 110,718,666 - 110,790,096 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 8 | 107,822,823 - 107,894,331 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 8 | 102,827,084 - 102,871,070 (+) | NCBI | | Celera | | | RGSC_v3.1 | 8 | 107,893,366 - 107,905,413 (+) | NCBI | | | | | Cytogenetic Map | 8 | q32 | NCBI | | | | |
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RYK (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 3 | 134,157,133 - 134,250,859 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 3 | 134,065,303 - 134,250,929 (-) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 3 | 133,875,977 - 133,969,701 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 3 | 135,358,668 - 135,452,276 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 3 | 135,358,675 - 135,452,284 | NCBI | | | | | Celera | 3 | 132,299,259 - 132,364,742 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | q22.2 | NCBI | | | | | HuRef | 3 | 131,253,894 - 131,347,303 (-) | NCBI | | HuRef | | | CHM1_1 | 3 | 133,840,146 - 133,933,826 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 3 | 136,902,246 - 136,995,998 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Ryk (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 9 | 102,712,119 - 102,785,506 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 9 | 102,712,116 - 102,785,504 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 9 | 102,834,920 - 102,908,307 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 9 | 102,834,917 - 102,908,305 (+) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 9 | 102,737,250 - 102,810,637 (+) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 9 | 102,693,139 - 102,765,678 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 9 | 102,375,302 - 102,457,932 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | F1 | NCBI | | | | | cM Map | 9 | 54.72 | NCBI | | | | |
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Ryk (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955501 | 4,328,682 - 4,419,307 (+) | Ensembl | | | | | ChiLan1.0 | NW_004955501 | 4,360,051 - 4,419,083 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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RYK (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 2 | 132,014,448 - 132,175,264 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 3 | 132,019,177 - 132,180,794 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 3 | 131,174,507 - 131,296,815 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 3 | 138,648,867 - 138,742,316 (-) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | |
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RYK (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 23 | 30,968,105 - 31,051,353 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 23 | 30,968,231 - 31,051,605 (-) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 23 | 30,946,196 - 31,036,480 (-) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 23 | 31,484,344 - 31,573,403 (-) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 23 | 31,481,573 - 31,574,239 (-) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 23 | 31,181,294 - 31,270,654 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 23 | 31,238,853 - 31,329,092 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 23 | 31,486,601 - 31,577,069 (-) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Ryk (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024405602 | 70,512,568 - 70,583,874 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936529 | 7,273,097 - 7,332,468 (-) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936529 | 7,273,070 - 7,344,372 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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RYK (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 13 | 75,282,428 - 75,390,525 (-) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 13 | 75,285,482 - 75,390,314 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 13 | 82,824,703 - 82,935,721 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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RYK (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 15 | 56,127,048 - 56,217,407 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 15 | 56,127,130 - 56,216,407 (+) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666041 | 29,111,547 - 29,202,125 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Ryk (Heterocephalus glaber - naked mole-rat) |
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Ryk (Rattus rattus - black rat) |
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