Rpl10a (ribosomal protein L10A) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rpl10a (ribosomal protein L10A) Rattus norvegicus
Analyze
Symbol: Rpl10a
Name: ribosomal protein L10A
RGD ID: 620497
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in response to ethanol and translation. Part of cytosolic large ribosomal subunit. Is active in postsynaptic density. Orthologous to human RPL10A (ribosomal protein L10a); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L10a; large ribosomal subunit protein uL1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rpl10a-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,390,533 - 6,393,091 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl206,390,179 - 6,393,091 (+)EnsemblGRCr8
mRatBN7.2206,388,800 - 6,391,358 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl923,720,820 - 23,721,473 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl206,385,823 - 6,391,357 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx207,101,427 - 7,103,985 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,463,257 - 6,465,815 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,942,733 - 6,945,291 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,908,309 - 7,910,867 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,908,304 - 7,910,867 (+)Ensemblrn6Rnor6.0
Rnor_5.02010,108,670 - 10,111,228 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4206,569,083 - 6,571,641 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera207,945,186 - 7,947,744 (+)NCBICelera
RGSC_v3.1206,569,309 - 6,571,868 (+)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4,6-trinitrotoluene  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-nitrofluorene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
5-fluorouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cylindrospermopsin  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (EXP)
disodium selenite  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
furfural  (ISO)
glafenine  (EXP)
glyphosate  (ISO)
hydralazine  (ISO)
indometacin  (ISO)
inulin  (ISO)
isobutanol  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (EXP)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
nitric oxide  (ISO)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
PhIP  (EXP)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
pyrogallol  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Relative and absolute quantification of postsynaptic density proteome isolated from rat forebrain and cerebellum. Cheng D, etal., Mol Cell Proteomics. 2006 Jun;5(6):1158-70. doi: 10.1074/mcp.D500009-MCP200. Epub 2006 Feb 28.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Effect of ethanol on hepatic ribosomal proteins and mRNA. Haviryaji KS, etal., Mol Cell Biochem. 1992 Oct 7;115(2):143-7.
5. Reconstitution of the active rat liver 60 S ribosomal subunit from different preparations of core particles and split proteins. Lavergne JP, etal., FEBS Lett. 1988 Aug 29;236(2):345-51.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. The primary structure of rat ribosomal protein L10a. Olvera J and Wool IG, Biochem Biophys Res Commun 1996 Mar 27;220(3):954-7.
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12962325   PMID:15489334   PMID:16452087   PMID:18614015   PMID:19946888   PMID:20458337   PMID:21423176   PMID:21630459   PMID:22658674   PMID:22681889   PMID:24625528   PMID:25957688  
PMID:30053369  


Genomics

Comparative Map Data
Rpl10a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,390,533 - 6,393,091 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl206,390,179 - 6,393,091 (+)EnsemblGRCr8
mRatBN7.2206,388,800 - 6,391,358 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl923,720,820 - 23,721,473 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl206,385,823 - 6,391,357 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx207,101,427 - 7,103,985 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,463,257 - 6,465,815 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,942,733 - 6,945,291 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,908,309 - 7,910,867 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,908,304 - 7,910,867 (+)Ensemblrn6Rnor6.0
Rnor_5.02010,108,670 - 10,111,228 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4206,569,083 - 6,571,641 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera207,945,186 - 7,947,744 (+)NCBICelera
RGSC_v3.1206,569,309 - 6,571,868 (+)NCBI
Cytogenetic Map20p12NCBI
RPL10A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38635,468,401 - 35,470,780 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl635,468,366 - 35,470,785 (+)Ensemblhg38GRCh38
GRCh37635,436,178 - 35,438,557 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36635,544,156 - 35,546,536 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34635,544,174 - 35,546,536NCBI
Celera636,990,157 - 36,992,537 (+)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef635,156,932 - 35,159,312 (+)NCBIHuRef
CHM1_1635,438,189 - 35,440,569 (+)NCBICHM1_1
T2T-CHM13v2.0635,291,477 - 35,293,856 (+)NCBIT2T-CHM13v2.0
Rpl10a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,547,557 - 28,550,007 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,547,445 - 28,550,007 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381728,328,471 - 28,331,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,328,471 - 28,331,033 (+)Ensemblmm10GRCm38
MGSCv371728,465,416 - 28,467,978 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361728,056,188 - 28,058,620 (+)NCBIMGSCv36mm8
Celera1728,882,295 - 28,884,857 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.65NCBI
Rpl10a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554373,383,265 - 3,386,064 (+)Ensembl
ChiLan1.0NW_0049554373,383,265 - 3,386,064 (+)NCBIChiLan1.0ChiLan1.0
RPL10A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2549,934,119 - 49,936,562 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1645,802,094 - 45,804,537 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0635,028,227 - 35,030,693 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1636,122,032 - 36,124,490 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl636,121,072 - 36,124,490 (+)EnsemblpanPan2panpan1.1
RPL10A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,601,760 - 4,604,142 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,601,766 - 4,604,220 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha124,617,249 - 4,619,630 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0124,939,572 - 4,941,953 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,939,577 - 4,942,035 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,600,335 - 4,602,715 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,679,124 - 4,681,505 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,779,297 - 4,781,678 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl10a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494640,178,613 - 40,181,085 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647623,779,140 - 23,781,563 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647623,779,144 - 23,781,560 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL10A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl731,327,440 - 31,333,638 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1731,327,763 - 31,330,624 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2736,106,599 - 36,109,500 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL10A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11736,655,272 - 36,657,951 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1736,653,183 - 36,658,033 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604435,378,502 - 35,381,229 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl10a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,988,641 - 21,991,768 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475421,988,641 - 21,991,846 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl10a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1185,529,595 - 5,532,253 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl10a
21 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:59
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000000603
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
BI280022  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X117,620,601 - 117,620,772 (-)MAPPERmRatBN7.2
Rnor_6.046,023,375 - 6,023,545NCBIRnor6.0
Rnor_5.046,046,134 - 6,046,304UniSTSRnor5.0
RGSC_v3.4X6,491,226 - 6,491,396UniSTSRGSC3.4
RH 3.4 Map4948.91UniSTS
Cytogenetic Map20p12UniSTS
Cytogenetic MapXq11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 1 56 145 64 60 48 73 48 6 282 151 11 132 70 81 12 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000603   ⟹   ENSRNOP00000000603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl206,390,179 - 6,393,091 (+)Ensembl
mRatBN7.2 Ensembl206,385,823 - 6,391,357 (+)Ensembl
Rnor_6.0 Ensembl207,908,304 - 7,910,867 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100947   ⟹   ENSRNOP00000090861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl206,390,179 - 6,393,091 (+)Ensembl
mRatBN7.2 Ensembl206,385,823 - 6,391,357 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101238   ⟹   ENSRNOP00000088898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl206,390,179 - 6,392,937 (+)Ensembl
mRatBN7.2 Ensembl206,385,823 - 6,391,204 (+)Ensembl
RefSeq Acc Id: NM_031065   ⟹   NP_112327
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8206,390,533 - 6,393,091 (+)NCBI
mRatBN7.2206,388,800 - 6,391,358 (+)NCBI
Rnor_6.0207,908,309 - 7,910,867 (+)NCBI
Rnor_5.02010,108,670 - 10,111,228 (+)NCBI
RGSC_v3.4206,569,083 - 6,571,641 (+)RGD
Celera207,945,186 - 7,947,744 (+)RGD
Sequence:
RefSeq Acc Id: XM_039099124   ⟹   XP_038955052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8206,391,228 - 6,393,091 (+)NCBI
mRatBN7.2206,388,802 - 6,391,358 (+)NCBI
RefSeq Acc Id: XM_063279575   ⟹   XP_063135645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8206,390,535 - 6,393,091 (+)NCBI
RefSeq Acc Id: NP_112327   ⟸   NM_031065
- UniProtKB: P62907 (UniProtKB/Swiss-Prot),   A6JJQ5 (UniProtKB/TrEMBL),   A0A8I5ZVS9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000603   ⟸   ENSRNOT00000000603
RefSeq Acc Id: XP_038955052   ⟸   XM_039099124
- Peptide Label: isoform X1
- UniProtKB: A6JJQ6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090861   ⟸   ENSRNOT00000100947
Ensembl Acc Id: ENSRNOP00000088898   ⟸   ENSRNOT00000101238
RefSeq Acc Id: XP_063135645   ⟸   XM_063279575
- Peptide Label: isoform X1
- UniProtKB: A6JJQ6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62907-F1-model_v2 AlphaFold P62907 1-217 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701460
Promoter ID:EPDNEW_R11983
Type:multiple initiation site
Name:Rpl10a_1
Description:ribosomal protein L10A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0207,908,306 - 7,908,366EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620497 AgrOrtholog
BioCyc Gene G2FUF-4423 BioCyc
Ensembl Genes ENSRNOG00000000505 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000063674 Ensembl
Ensembl Transcript ENSRNOT00000000603 ENTREZGENE
  ENSRNOT00000000603.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.190.20 UniProtKB/Swiss-Prot
  3.40.50.790 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6919792 IMAGE-MGC_LOAD
  IMAGE:7370365 IMAGE-MGC_LOAD
InterPro eL8_RNA-proc_assembly UniProtKB/Swiss-Prot
  Ribosomal_L1 UniProtKB/Swiss-Prot
  Ribosomal_L1-like UniProtKB/Swiss-Prot
  Ribosomal_L1/biogenesis UniProtKB/Swiss-Prot
  Ribosomal_L1_3-a/b-sand UniProtKB/Swiss-Prot
  Ribosomal_L1_CS UniProtKB/Swiss-Prot
KEGG Report rno:81729 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112780 IMAGE-MGC_LOAD
  MGC:72800 IMAGE-MGC_LOAD
NCBI Gene 81729 ENTREZGENE
PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER UniProtKB/Swiss-Prot
Pfam Ribosomal_L1 UniProtKB/Swiss-Prot
PhenoGen Rpl10a PhenoGen
PIRSF Ribosomal_L1 UniProtKB/Swiss-Prot
PROSITE RIBOSOMAL_L1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000505 RatGTEx
  ENSRNOG00000063674 RatGTEx
Superfamily-SCOP SSF56808 UniProtKB/Swiss-Prot
UniProt A0A8I5ZVS9 ENTREZGENE
  A0A8I6AEM1_RAT UniProtKB/TrEMBL
  A6JJQ5 ENTREZGENE, UniProtKB/TrEMBL
  A6JJQ6 ENTREZGENE, UniProtKB/TrEMBL
  P62907 ENTREZGENE
  Q4KM60_RAT UniProtKB/TrEMBL
  RL10A_RAT UniProtKB/Swiss-Prot
UniProt Secondary P52859 UniProtKB/Swiss-Prot
  P53025 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rpl10a  ribosomal protein L10A    ribosomal protein L10a  Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rpl10a  ribosomal protein L10a      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein consists of 217 amino acids and has a molecular weight of 24,815 daltons 633764