Prmt3 (protein arginine methyltransferase 3) - Rat Genome Database

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Pathways
Gene: Prmt3 (protein arginine methyltransferase 3) Rattus norvegicus
Analyze
Symbol: Prmt3
Name: protein arginine methyltransferase 3
RGD ID: 620413
Description: Enables modified amino acid binding activity and protein-arginine omega-N asymmetric methyltransferase activity. Involved in dendritic spine morphogenesis. Predicted to be located in cytosol. Predicted to be active in nucleus. Biomarker of asthma. Orthologous to human PRMT3 (protein arginine methyltransferase 3); PARTICIPATES IN histidine metabolic pathway; histidinemia pathway; homocysteine metabolic pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: heterogeneous nuclear ribonucleoprotein methyltransferase-like 3; heterogeneous nuclear ribonucleoprotein methyltransferase-like 3 (S. cerevisiae); heterogeneous nuclear ribonucleoprotein methyltransferase-like protein 3; Hrmt1l3; protein arginine N-methyltransferase 3; protein arginine N-methyltransferase 3(hnRNP methyltransferase S. cerevisiae)-like 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81108,628,899 - 108,718,803 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1108,626,749 - 108,718,803 (+)EnsemblGRCr8
mRatBN7.2199,492,712 - 99,581,774 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,492,724 - 99,579,435 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1104,846,834 - 104,933,517 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01113,318,757 - 113,405,436 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01106,641,014 - 106,727,679 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01105,113,595 - 105,200,253 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1105,113,595 - 105,200,470 (+)Ensemblrn6Rnor6.0
Rnor_5.01106,163,799 - 106,250,502 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4199,581,943 - 99,668,604 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera193,691,794 - 93,778,258 (+)NCBICelera
RGSC_v3.1199,660,053 - 99,746,714 (+)NCBI
Cytogenetic Map1q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
asthma  (IEP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-nitropyrene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
Benoxacor  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
caffeine  (EXP)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxyacetic acid  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP)
Monobutylphthalate  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
nitrates  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenytoin  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
ribavirin  (ISO)
rotenone  (EXP)
selenium atom  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Arginine methylation an emerging regulator of protein function. Bedford MT and Richard S, Mol Cell 2005 Apr 29;18(3):263-72.
2. Histone arginine methylation. Di Lorenzo A and Bedford MT, FEBS Lett. 2011 Jul 7;585(13):2024-31. doi: 10.1016/j.febslet.2010.11.010. Epub 2010 Nov 11.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. PRMT3 is essential for dendritic spine maturation in rat hippocampal neurons. Miyata S, etal., Brain Res. 2010 Sep 17;1352:11-20. doi: 10.1016/j.brainres.2010.07.033. Epub 2010 Jul 18.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. [Expression of protein arginine N-methyltransferases in E3 rat models of acute asthma]. Sun QZ, etal., Nan Fang Yi Ke Da Xue Xue Bao. 2010 Apr;30(4):716-9.
10. PRMT 3, a type I protein arginine N-methyltransferase that differs from PRMT1 in its oligomerization, subcellular localization, substrate specificity, and regulation. Tang J, etal., J Biol Chem 1998 Jul 3;273(27):16935-45.
11. Crystal structure of the conserved core of protein arginine methyltransferase PRMT3. Zhang X, etal., EMBO J. 2000 Jul 17;19(14):3509-19.
Additional References at PubMed
PMID:10931850   PMID:15473865   PMID:18495660   PMID:18573314   PMID:24815167  


Genomics

Comparative Map Data
Prmt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81108,628,899 - 108,718,803 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1108,626,749 - 108,718,803 (+)EnsemblGRCr8
mRatBN7.2199,492,712 - 99,581,774 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,492,724 - 99,579,435 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1104,846,834 - 104,933,517 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01113,318,757 - 113,405,436 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01106,641,014 - 106,727,679 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01105,113,595 - 105,200,253 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1105,113,595 - 105,200,470 (+)Ensemblrn6Rnor6.0
Rnor_5.01106,163,799 - 106,250,502 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4199,581,943 - 99,668,604 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera193,691,794 - 93,778,258 (+)NCBICelera
RGSC_v3.1199,660,053 - 99,746,714 (+)NCBI
Cytogenetic Map1q22NCBI
PRMT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381120,387,716 - 20,509,338 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1120,387,549 - 20,509,350 (+)Ensemblhg38GRCh38
GRCh371120,409,262 - 20,530,884 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361120,365,679 - 20,487,349 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1120,541,661 - 20,662,994 (+)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1120,092,368 - 20,214,172 (+)NCBIHuRef
CHM1_11120,408,983 - 20,530,723 (+)NCBICHM1_1
T2T-CHM13v2.01120,508,397 - 20,629,944 (+)NCBIT2T-CHM13v2.0
Prmt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39749,428,067 - 49,508,016 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl749,428,094 - 49,508,013 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38749,778,319 - 49,861,264 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl749,778,346 - 49,858,265 (+)Ensemblmm10GRCm38
MGSCv37757,033,728 - 57,113,635 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36749,646,379 - 49,726,286 (+)NCBIMGSCv36mm8
Celera745,228,154 - 45,308,430 (+)NCBICelera
Cytogenetic Map7B4NCBI
cM Map731.44NCBI
Prmt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554761,223,076 - 1,331,582 (+)Ensembl
ChiLan1.0NW_0049554761,222,579 - 1,331,582 (+)NCBIChiLan1.0ChiLan1.0
PRMT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2922,688,983 - 22,817,065 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11122,648,763 - 22,776,831 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01120,412,419 - 20,538,295 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11120,324,196 - 20,449,681 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1120,324,196 - 20,449,681 (+)EnsemblpanPan2panpan1.1
PRMT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12142,406,327 - 42,530,157 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2142,406,314 - 42,528,116 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2141,882,566 - 42,006,278 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02143,527,769 - 43,650,988 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2143,527,763 - 43,653,579 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12142,529,594 - 42,653,065 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02142,705,438 - 42,829,263 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02143,087,080 - 43,211,034 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Prmt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494742,462,572 - 42,589,987 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366541,336,429 - 1,461,476 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366541,336,546 - 1,464,959 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRMT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl238,884,362 - 39,032,996 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1238,884,311 - 39,032,944 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2241,911,569 - 41,930,041 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRMT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,486,165 - 44,621,002 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl144,485,880 - 44,620,936 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038141,822,116 - 141,955,377 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prmt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476611,670,108 - 11,795,272 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476611,669,732 - 11,797,133 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Prmt3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12149,974,174 - 150,063,185 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Prmt3
530 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:146
Interacting mature miRNAs:173
Transcripts:ENSRNOT00000020853
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1101228864146228864Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)1108680016153680016Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1102359314153680016Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)197582336142582336Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1101594089146594089Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1100345976145345976Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat

Markers in Region
RH141582  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2199,579,143 - 99,579,339 (+)MAPPERmRatBN7.2
Rnor_6.01105,199,960 - 105,200,155NCBIRnor6.0
Rnor_5.01106,250,209 - 106,250,404UniSTSRnor5.0
RGSC_v3.4199,668,311 - 99,668,506UniSTSRGSC3.4
Celera193,777,965 - 93,778,160UniSTS
RH 3.4 Map1920.5UniSTS
Cytogenetic Map1q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000020853   ⟹   ENSRNOP00000020853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,628,907 - 108,718,794 (+)Ensembl
mRatBN7.2 Ensembl199,492,724 - 99,579,435 (+)Ensembl
Rnor_6.0 Ensembl1105,113,595 - 105,200,259 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079655   ⟹   ENSRNOP00000069745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,628,907 - 108,718,794 (+)Ensembl
mRatBN7.2 Ensembl199,492,724 - 99,579,435 (+)Ensembl
Rnor_6.0 Ensembl1105,113,658 - 105,200,470 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000127157   ⟹   ENSRNOP00000110628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,626,749 - 108,718,803 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000161702   ⟹   ENSRNOP00000104381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,628,907 - 108,718,794 (+)Ensembl
RefSeq Acc Id: NM_053557   ⟹   NP_446009
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,628,924 - 108,718,803 (+)NCBI
mRatBN7.2199,492,768 - 99,579,437 (+)NCBI
Rnor_6.01105,113,595 - 105,200,253 (+)NCBI
Rnor_5.01106,163,799 - 106,250,502 (+)NCBI
RGSC_v3.4199,581,943 - 99,668,604 (+)RGD
Celera193,691,794 - 93,778,258 (+)RGD
Sequence:
RefSeq Acc Id: XM_039093128   ⟹   XP_038949056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,628,899 - 108,717,950 (+)NCBI
mRatBN7.2199,492,712 - 99,581,774 (+)NCBI
Protein Sequences
Protein RefSeqs NP_446009 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949056 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC40158 (Get FASTA)   NCBI Sequence Viewer  
  EDM07219 (Get FASTA)   NCBI Sequence Viewer  
  EDM07220 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020853
  ENSRNOP00000069745
GenBank Protein O70467 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446009   ⟸   NM_053557
- UniProtKB: O70467 (UniProtKB/Swiss-Prot),   A6JBG4 (UniProtKB/TrEMBL),   A0A8L2QAU2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069745   ⟸   ENSRNOT00000079655
Ensembl Acc Id: ENSRNOP00000020853   ⟸   ENSRNOT00000020853
RefSeq Acc Id: XP_038949056   ⟸   XM_039093128
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JW52 (UniProtKB/TrEMBL),   A0A8L2QAU2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104381   ⟸   ENSRNOT00000161702
Ensembl Acc Id: ENSRNOP00000110628   ⟸   ENSRNOT00000127157
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70467-F1-model_v2 AlphaFold O70467 1-528 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690078
Promoter ID:EPDNEW_R602
Type:multiple initiation site
Name:Prmt3_1
Description:protein arginine methyltransferase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01105,113,568 - 105,113,628EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620413 AgrOrtholog
BioCyc Gene G2FUF-59559 BioCyc
Ensembl Genes ENSRNOG00000014829 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000020853 ENTREZGENE
  ENSRNOT00000079655 ENTREZGENE
Gene3D-CATH 3.40.50.150 UniProtKB/Swiss-Prot
  Hnrnp arginine n-methyltransferase1 UniProtKB/Swiss-Prot
InterPro ANM3-like_C2H2_Zf UniProtKB/Swiss-Prot
  ANM3_Znf-C2H2 UniProtKB/Swiss-Prot
  Arg_MeTrfase UniProtKB/Swiss-Prot
  PRMT_dom UniProtKB/Swiss-Prot
  SAM-dependent_MTases UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
KEGG Report rno:89820 UniProtKB/Swiss-Prot
NCBI Gene 89820 ENTREZGENE
PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3 UniProtKB/Swiss-Prot
  PTHR11006 UniProtKB/Swiss-Prot
Pfam ANM3_C2H2_Zf UniProtKB/Swiss-Prot
  ANM3_zf-C2H2 UniProtKB/Swiss-Prot
  PrmA UniProtKB/Swiss-Prot
  PRMT_C UniProtKB/Swiss-Prot
PhenoGen Prmt3 PhenoGen
PROSITE SAM_MT_PRMT UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014829 RatGTEx
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot
  SSF57667 UniProtKB/Swiss-Prot
UniProt A0A0G2JW52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QAU2 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LSN4_RAT UniProtKB/TrEMBL
  A0ABK0M0T5_RAT UniProtKB/TrEMBL
  A6JBG4 ENTREZGENE, UniProtKB/TrEMBL
  ANM3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-24 Prmt3  protein arginine methyltransferase 3  Prmt3  protein arginine N-methyltransferase 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-25 Prmt3  protein arginine N-methyltransferase 3  Hrmt1l3  heterogeneous nuclear ribonucleoprotein methyltransferase-like 3 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Hrmt1l3  heterogeneous nuclear ribonucleoprotein methyltransferase-like 3 (S. cerevisiae)  Prmt3  protein arginine N-methyltransferase 3(hnRNP methyltransferase S. cerevisiae)-like 3  Symbol and Name updated 1299863 APPROVED
2002-08-07 Prmt3  protein arginine N-methyltransferase 3(hnRNP methyltransferase S. cerevisiae)-like 3      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_other probably acts as a monomer 729523