Nup88 (nucleoporin 88) - Rat Genome Database

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Gene: Nup88 (nucleoporin 88) Rattus norvegicus
Analyze
Symbol: Nup88
Name: nucleoporin 88
RGD ID: 620182
Description: Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nucleocytoplasmic transport. Part of nuclear pore. Human ortholog(s) of this gene implicated in fetal akinesia deformation sequence syndrome 4. Orthologous to human NUP88 (nucleoporin 88); PARTICIPATES IN ribosome biogenesis pathway; RNA transport pathway; INTERACTS WITH 2,6-dinitrotoluene; 3-chloropropane-1,2-diol; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 88 kDa nuclear pore complex protein; 88 kDa nucleoporin; nuclear pore complex protein Nup88; nucleoporin 88kDa; nucleoporin Nup84; nucleoporin Nup88; Nup84; Prei2; preimplantation protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81056,166,486 - 56,190,829 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1056,166,486 - 56,191,383 (-)EnsemblGRCr8
mRatBN7.21055,667,903 - 55,692,249 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,667,906 - 55,692,257 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1060,347,602 - 60,371,965 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,836,121 - 59,860,484 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,335,206 - 55,359,574 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,581,828 - 57,606,171 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,581,828 - 57,606,171 (-)Ensemblrn6Rnor6.0
Rnor_5.01057,326,777 - 57,351,383 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41057,849,428 - 57,874,078 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1054,813,735 - 54,837,939 (-)NCBICelera
RGSC_v3.11057,863,050 - 57,887,701 (-)NCBI
Cytogenetic Map10q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
cadmium dichloride  (EXP)
clofibrate  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
diethyl maleate  (ISO)
dimethylarsinous acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
eugenol  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
ivermectin  (ISO)
LY294002  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (EXP)
nickel sulfate  (ISO)
ochratoxin A  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorooctanoic acid  (EXP)
phenethyl caffeate  (EXP)
pirinixic acid  (ISO)
piroxicam  (ISO)
pyrimidifen  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear envelope  (IEA,ISO)
nuclear pore  (IBA,IDA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Nup84, a novel nucleoporin that is associated with CAN/Nup214 on the cytoplasmic face of the nuclear pore complex. Bastos R, etal., J Cell Biol 1997 Jun 2;137(5):989-1000.
2. Sequential recruitment of NPC proteins to the nuclear periphery at the end of mitosis. Bodoor K, etal., J Cell Sci. 1999 Jul;112 ( Pt 13):2253-64.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. Nuclear export and cytoplasmic maturation of ribosomal subunits. Zemp I and Kutay U, FEBS Lett. 2007 Jun 19;581(15):2783-93. Epub 2007 May 11.
Additional References at PubMed
PMID:15489334   PMID:23777819   PMID:30543681  


Genomics

Comparative Map Data
Nup88
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81056,166,486 - 56,190,829 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1056,166,486 - 56,191,383 (-)EnsemblGRCr8
mRatBN7.21055,667,903 - 55,692,249 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,667,906 - 55,692,257 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1060,347,602 - 60,371,965 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,836,121 - 59,860,484 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,335,206 - 55,359,574 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,581,828 - 57,606,171 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,581,828 - 57,606,171 (-)Ensemblrn6Rnor6.0
Rnor_5.01057,326,777 - 57,351,383 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41057,849,428 - 57,874,078 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1054,813,735 - 54,837,939 (-)NCBICelera
RGSC_v3.11057,863,050 - 57,887,701 (-)NCBI
Cytogenetic Map10q24NCBI
NUP88
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,384,833 - 5,419,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,359,668 - 5,420,164 (-)Ensemblhg38GRCh38
GRCh37175,288,153 - 5,322,982 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,230,144 - 5,263,720 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34175,230,143 - 5,263,720NCBI
Celera175,305,791 - 5,339,368 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef175,179,990 - 5,213,586 (-)NCBIHuRef
CHM1_1175,299,000 - 5,332,704 (-)NCBICHM1_1
T2T-CHM13v2.0175,278,570 - 5,313,398 (-)NCBIT2T-CHM13v2.0
Nup88
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,833,884 - 70,860,799 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,833,884 - 70,860,799 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381170,943,058 - 70,969,973 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,943,058 - 70,969,973 (-)Ensemblmm10GRCm38
MGSCv371170,756,573 - 70,783,475 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361170,759,253 - 70,786,156 (-)NCBIMGSCv36mm8
Celera1178,497,441 - 78,524,375 (-)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.21NCBI
Nup88
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,749,910 - 10,780,423 (-)Ensembl
ChiLan1.0NW_00495546710,749,910 - 10,780,423 (-)NCBIChiLan1.0ChiLan1.0
NUP88
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,996,642 - 13,030,205 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,964,857 - 14,998,434 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,434,448 - 5,468,004 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,426,379 - 5,460,375 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,426,379 - 5,460,375 (-)EnsemblpanPan2panpan1.1
NUP88
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,366,213 - 31,389,780 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,366,244 - 31,389,780 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha531,504,257 - 31,527,770 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0531,470,884 - 31,494,391 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,470,542 - 31,494,391 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,436,436 - 31,459,958 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,395,325 - 31,418,834 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,571,764 - 31,595,274 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nup88
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,483,577 - 53,515,640 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,385,289 - 2,421,783 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,385,289 - 2,417,398 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP88
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,562,440 - 51,601,968 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11251,562,455 - 51,603,095 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NUP88
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,795,525 - 4,829,194 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,792,569 - 4,829,127 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605916,759,409 - 16,792,741 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup88
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247869,192,061 - 9,231,705 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247869,192,061 - 9,231,868 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Nup88
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1950,569,903 - 50,594,205 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nup88
223 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:164
Count of miRNA genes:126
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000009015
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103589345164140567Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105107189796071897Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103621155669161158Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103179628176796281Rat
152025227Bw195Body weight QTL 1955.73body mass (VT:0001259)104748901769161158Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101577675460776754Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102702353598502431Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)102744378772443787Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105216243375582749Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)103550938391417879Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
1578762Toxo1Toxoplasma gondii resistance QTL 1brain integrity trait (VT:0010579)percentage of study population displaying Toxoplasma gondii brain cysts at a point in time (CMO:0002028)105269900459876693Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)101993920764939207Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)101803578263035782Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105429633699451733Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104183127886831278Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105046480295464802Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104493935989939359Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104552916496099749Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101866841963668419Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102183375861843633Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105086028895860288Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102895035373950353Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103589326364653589Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102980091064653589Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102744378772443787Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14282327487823274Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104493935989939359Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104282327487823274Rat
2306787Ean3Experimental allergic neuritis QTL 33.1nervous system integrity trait (VT:0010566)body weight loss (CMO:0001399)105429622767476781Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102293137391127454Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)104949549294495492Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
1354585Eae18aExperimental allergic encephalomyelitis QTL 18a7.50.0004nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)105429622758944345Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)102466212373695339Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102702353561843633Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103550938380509383Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)102980091091417879Rat
2298495Eae23Experimental allergic encephalomyelitis QTL 2316.93nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)101617552561175525Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)102011061465110614Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)102758722696099902Rat
2289985Bp305Blood pressure QTL 305arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102907697874076978Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105530797293608131Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101803578263035782Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104360879388608793Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)102744378772443787Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104994371094943710Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103112911376129113Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104493935989939359Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104786912992869129Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
12880050Am10Aortic mass QTL 100.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)103950348784503487Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105060467795604677Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)103550938388177745Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)102011061465110614Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102702353599451848Rat

Markers in Region
RH140090  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21055,671,416 - 55,671,632 (+)MAPPERmRatBN7.2
Rnor_6.01057,585,342 - 57,585,557NCBIRnor6.0
Rnor_5.01057,330,291 - 57,330,506UniSTSRnor5.0
RGSC_v3.41057,852,942 - 57,853,157UniSTSRGSC3.4
Celera1054,817,249 - 54,817,464UniSTS
Cytogenetic Map10q24UniSTS
RH133762  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81056,166,583 - 56,167,394 (+)Marker Load Pipeline
mRatBN7.21055,668,000 - 55,668,811 (+)MAPPERmRatBN7.2
Rnor_6.01057,581,926 - 57,582,736NCBIRnor6.0
Rnor_5.01057,326,875 - 57,327,685UniSTSRnor5.0
RGSC_v3.41057,849,526 - 57,850,336UniSTSRGSC3.4
Celera1054,813,833 - 54,814,643UniSTS
Cytogenetic Map10q24UniSTS
RH139069  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21055,672,850 - 55,673,025 (+)MAPPERmRatBN7.2
Rnor_6.01057,586,776 - 57,586,950NCBIRnor6.0
Rnor_5.01057,331,725 - 57,331,899UniSTSRnor5.0
RGSC_v3.41057,854,376 - 57,854,550UniSTSRGSC3.4
Celera1054,818,683 - 54,818,857UniSTS
Cytogenetic Map10q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009015   ⟹   ENSRNOP00000009015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1056,166,486 - 56,191,383 (-)Ensembl
mRatBN7.2 Ensembl1055,667,906 - 55,692,257 (-)Ensembl
Rnor_6.0 Ensembl1057,581,828 - 57,606,171 (-)Ensembl
RefSeq Acc Id: NM_053616   ⟹   NP_446068
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81056,166,486 - 56,190,829 (-)NCBI
mRatBN7.21055,667,903 - 55,692,249 (-)NCBI
Rnor_6.01057,581,828 - 57,606,171 (-)NCBI
Rnor_5.01057,326,777 - 57,351,383 (-)NCBI
RGSC_v3.41057,849,428 - 57,874,078 (-)RGD
Celera1054,813,735 - 54,837,939 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_446068 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB52419 (Get FASTA)   NCBI Sequence Viewer  
  AAH72524 (Get FASTA)   NCBI Sequence Viewer  
  EDM05061 (Get FASTA)   NCBI Sequence Viewer  
  EDM05062 (Get FASTA)   NCBI Sequence Viewer  
  EDM05063 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009015
GenBank Protein O08658 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446068   ⟸   NM_053616
- UniProtKB: O08658 (UniProtKB/Swiss-Prot),   A6HGA6 (UniProtKB/TrEMBL),   A0A8L2UI86 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009015   ⟸   ENSRNOT00000009015

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08658-F1-model_v2 AlphaFold O08658 1-742 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697377
Promoter ID:EPDNEW_R7900
Type:single initiation site
Name:Nup88_1
Description:nucleoporin 88
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01057,606,169 - 57,606,229EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620182 AgrOrtholog
BioCyc Gene G2FUF-24420 BioCyc
Ensembl Genes ENSRNOG00000006126 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000009015 ENTREZGENE
IMAGE_CLONE IMAGE:7097375 IMAGE-MGC_LOAD
InterPro Nucleoporin_Nup88 UniProtKB/Swiss-Prot
  NUP88/NUP82 UniProtKB/Swiss-Prot
KEGG Report rno:113929 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91539 IMAGE-MGC_LOAD
NCBI Gene 113929 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP88 UniProtKB/Swiss-Prot
  PTHR13257 UniProtKB/Swiss-Prot
Pfam Nup88 UniProtKB/Swiss-Prot
PhenoGen Nup88 PhenoGen
RatGTEx ENSRNOG00000006126 RatGTEx
UniProt A0A8L2UI86 ENTREZGENE, UniProtKB/TrEMBL
  A6HGA6 ENTREZGENE, UniProtKB/TrEMBL
  A6HGA7_RAT UniProtKB/TrEMBL
  A6HGA8_RAT UniProtKB/TrEMBL
  NUP88_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-10-22 Nup88  nucleoporin 88  Nup88  nucleoporin 88kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Nup88  nucleoporin 88kDa  Nup88  nucleoporin 88  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Nup88  nucleoporin 88  Prei2  preimplantation protein 2  Symbol and Name updated 1299863 APPROVED
2002-08-07 Prei2        Symbol and Name status set to provisional 70820 PROVISIONAL