Fgf6 (fibroblast growth factor 6) - Rat Genome Database

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Gene: Fgf6 (fibroblast growth factor 6) Rattus norvegicus
Analyze
Symbol: Fgf6
Name: fibroblast growth factor 6
RGD ID: 620130
Description: Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Predicted to be involved in several processes, including fibroblast growth factor receptor signaling pathway; positive regulation of MAPK cascade; and positive regulation of cell population proliferation. Predicted to act upstream of or within cartilage condensation and myoblast differentiation. Located in sarcolemma. Orthologous to human FGF6 (fibroblast growth factor 6); PARTICIPATES IN fibroblast growth factor signaling pathway; syndecan signaling pathway; melanoma pathway; INTERACTS WITH ammonium chloride; bisphenol A; (S)-amphetamine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Fgf7b; fibroblast growth factor 7b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84161,541,089 - 161,549,624 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4161,541,089 - 161,553,521 (+)EnsemblGRCr8
mRatBN7.24159,854,913 - 159,863,447 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4159,854,913 - 159,863,447 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4166,084,732 - 166,093,267 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04161,867,644 - 161,876,179 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04160,501,682 - 160,510,219 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04159,563,798 - 159,572,333 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4159,563,798 - 159,572,333 (+)Ensemblrn6Rnor6.0
Rnor_5.04232,040,999 - 232,049,534 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44163,403,896 - 163,412,431 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4148,570,431 - 148,578,966 (+)NCBICelera
RGSC_v3.14163,648,831 - 163,657,367 (+)NCBI
Cytogenetic Map4q42NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Solvent use and psychiatric comorbidity. Dinwiddie SH, etal., Br J Addict. 1990 Dec;85(12):1647-56.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Gene expression patterns of the fibroblast growth factors and their receptors during myogenesis of rat satellite cells. Kastner S, etal., J Histochem Cytochem 2000 Aug;48(8):1079-96.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Increased expression of fibroblast growth factor 6 in human prostatic intraepithelial neoplasia and prostate cancer. Ropiquet F, etal., Cancer Res. 2000 Aug 1;60(15):4245-50.
13. Differential adaptation of growth and differentiation factor 8/myostatin, fibroblast growth factor 6 and leukemia inhibitory factor in overloaded, regenerating and denervated rat muscles. Sakuma K, etal., Biochim Biophys Acta. 2000 Jun 2;1497(1):77-88.
14. Tissue remodeling in the acute otitis media mouse model. Sautter NB, etal., Int J Pediatr Otorhinolaryngol. 2011 Nov;75(11):1368-71. doi: 10.1016/j.ijporl.2011.07.026. Epub 2011 Sep 1.
Additional References at PubMed
PMID:8223280   PMID:8565825   PMID:8663044   PMID:32105707  


Genomics

Comparative Map Data
Fgf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84161,541,089 - 161,549,624 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4161,541,089 - 161,553,521 (+)EnsemblGRCr8
mRatBN7.24159,854,913 - 159,863,447 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4159,854,913 - 159,863,447 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4166,084,732 - 166,093,267 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04161,867,644 - 161,876,179 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04160,501,682 - 160,510,219 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04159,563,798 - 159,572,333 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4159,563,798 - 159,572,333 (+)Ensemblrn6Rnor6.0
Rnor_5.04232,040,999 - 232,049,534 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44163,403,896 - 163,412,431 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4148,570,431 - 148,578,966 (+)NCBICelera
RGSC_v3.14163,648,831 - 163,657,367 (+)NCBI
Cytogenetic Map4q42NCBI
FGF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38124,434,142 - 4,445,815 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl124,428,155 - 4,445,815 (-)Ensemblhg38GRCh38
GRCh37124,543,308 - 4,554,981 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36124,413,569 - 4,425,041 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34124,413,568 - 4,425,041NCBI
Celera126,165,354 - 6,176,826 (-)NCBICelera
Cytogenetic Map12p13.32NCBI
HuRef124,399,989 - 4,411,463 (-)NCBIHuRef
CHM1_1124,542,938 - 4,554,384 (-)NCBICHM1_1
T2T-CHM13v2.0124,440,927 - 4,452,599 (-)NCBIT2T-CHM13v2.0
Fgf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396126,992,505 - 127,001,681 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6126,992,549 - 127,005,150 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386127,015,542 - 127,024,718 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6127,015,586 - 127,028,187 (+)Ensemblmm10GRCm38
MGSCv376126,965,560 - 126,974,736 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366126,981,205 - 126,993,806 (+)NCBIMGSCv36mm8
Celera6128,694,407 - 128,703,583 (+)NCBICelera
Cytogenetic Map6F3NCBI
cM Map661.92NCBI
Fgf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554132,246,965 - 2,257,883 (-)Ensembl
ChiLan1.0NW_0049554132,246,965 - 2,257,883 (-)NCBIChiLan1.0ChiLan1.0
FGF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2109,973,565 - 9,986,599 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1129,971,511 - 9,983,357 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0124,543,776 - 4,555,352 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1124,466,975 - 4,478,459 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl124,466,975 - 4,478,459 (-)EnsemblpanPan2panpan1.1
FGF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12740,440,298 - 40,456,933 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2740,440,377 - 40,455,257 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha276,224,956 - 6,241,616 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02740,795,894 - 40,812,531 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2740,795,777 - 40,808,204 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12740,684,960 - 40,701,438 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02740,709,936 - 40,726,576 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,635,648 - 5,652,137 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fgf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945104,559,308 - 104,575,178 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366064,613,048 - 4,624,587 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366064,613,052 - 4,624,587 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl565,975,838 - 65,990,029 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1565,975,807 - 65,990,035 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2568,197,796 - 68,207,597 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FGF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,464,159 - 4,476,592 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl114,464,171 - 4,473,916 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660633,768,764 - 3,779,212 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248601,539,989 - 1,551,372 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248601,539,964 - 1,551,363 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fgf6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1620,877,514 - 20,886,026 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fgf6
103 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:111
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000026866
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4149763204169799698Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4134199006168870974Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4148834094168870974Rat

Markers in Region
Fgf6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24159,854,977 - 159,855,146 (+)MAPPERmRatBN7.2
Rnor_6.04159,563,863 - 159,564,031NCBIRnor6.0
Rnor_5.04232,049,301 - 232,049,469UniSTSRnor5.0
RGSC_v3.44163,403,961 - 163,404,129UniSTSRGSC3.4
Celera4148,570,496 - 148,570,664UniSTS
Cytogenetic Map4q42UniSTS
GDB:214840  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24159,854,748 - 159,855,016 (+)MAPPERmRatBN7.2
Rnor_6.04159,563,634 - 159,563,901NCBIRnor6.0
Rnor_5.04232,049,431 - 232,049,698UniSTSRnor5.0
RGSC_v3.44163,403,732 - 163,403,999UniSTSRGSC3.4
Celera4148,570,267 - 148,570,534UniSTS
Cytogenetic Map4q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
1 11 24 13 16 17 9 9 5 64 37 4 4 9 18 8

Sequence


Ensembl Acc Id: ENSRNOT00000081426   ⟹   ENSRNOP00000068734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4159,854,913 - 159,863,447 (+)Ensembl
Rnor_6.0 Ensembl4159,563,798 - 159,572,333 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163648   ⟹   ENSRNOP00000107179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4161,541,089 - 161,553,521 (+)Ensembl
RefSeq Acc Id: NM_131908   ⟹   NP_571983
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84161,541,089 - 161,549,624 (+)NCBI
mRatBN7.24159,854,913 - 159,863,447 (+)NCBI
Rnor_6.04159,563,798 - 159,572,333 (+)NCBI
Rnor_5.04232,040,999 - 232,049,534 (-)NCBI
RGSC_v3.44163,403,896 - 163,412,431 (+)RGD
Celera4148,570,431 - 148,578,966 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_571983 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB84704 (Get FASTA)   NCBI Sequence Viewer  
  EDM01819 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000107179
  ENSRNOP00000107179.1
GenBank Protein VDK10965 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_571983   ⟸   NM_131908
- UniProtKB: Q8R5L5 (UniProtKB/TrEMBL),   A6ILX0 (UniProtKB/TrEMBL),   A0A0G2JTJ4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068734   ⟸   ENSRNOT00000081426
Ensembl Acc Id: ENSRNOP00000107179   ⟸   ENSRNOT00000163648

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R5L5-F1-model_v2 AlphaFold Q8R5L5 1-208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620130 AgrOrtholog
BioCyc Gene G2FUF-42953 BioCyc
Ensembl Genes ENSRNOG00000053662 Ensembl
  ENSRNOG00000084144 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000163648 ENTREZGENE
  ENSRNOT00000163648.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro Cytokine_IL1-like UniProtKB/TrEMBL
  GF_heparin_bd UniProtKB/TrEMBL
KEGG Report rno:170700 UniProtKB/TrEMBL
NCBI Gene 170700 ENTREZGENE
PANTHER IL1_HBGF UniProtKB/TrEMBL
Pfam FGF UniProtKB/TrEMBL
PhenoGen Fgf6 PhenoGen
PRINTS HBGFFGF UniProtKB/TrEMBL
  IL1HBGF UniProtKB/TrEMBL
PROSITE HBGF_FGF UniProtKB/TrEMBL
RatGTEx ENSRNOG00000053662 RatGTEx
  ENSRNOG00000084144 RatGTEx
SMART FGF UniProtKB/TrEMBL
Superfamily-SCOP Cytok_IL1_like UniProtKB/TrEMBL
UniProt A0A0G2JTJ4 ENTREZGENE, UniProtKB/TrEMBL
  A6ILX0 ENTREZGENE
  Q8R5L5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6ILX0 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Fgf6  fibroblast growth factor 6      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Fgf6  fibroblast growth factor 6      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression enriched in in the myofibers, but not in the connective tissue cells surrounding the myofibers or in satellite cells; expressed in skeletal musle tissue 708329