Rps9 (ribosomal protein S9) - Rat Genome Database

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Gene: Rps9 (ribosomal protein S9) Rattus norvegicus
Analyze
Symbol: Rps9
Name: ribosomal protein S9
RGD ID: 619889
Description: Enables 5.8S rRNA binding activity. Predicted to be involved in cytoplasmic translation and ribosomal small subunit biogenesis. Part of cytosolic small ribosomal subunit. Orthologous to human RPS9 (ribosomal protein S9); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S9; 40S ribosomal protein S9-like; LOC100909466; ribosomal protein S9-like 1; Rps9l1; small ribosomal subunit protein uS4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,427,084 - 74,430,513 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl174,427,087 - 74,430,105 (-)EnsemblGRCr8
mRatBN7.2165,511,723 - 65,515,076 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,511,723 - 65,515,123 (-)EnsemblmRatBN7.2
Rnor_6.0164,018,325 - 64,021,723 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,018,125 - 64,090,021 (-)Ensemblrn6Rnor6.0
Rnor_5.0163,010,583 - 63,013,972 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4163,824,657 - 63,828,046 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera163,236,829 - 63,240,227 (-)NCBICelera
RGSC_v3.1163,901,399 - 63,904,417 (-)NCBI
Cytogenetic Map1q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
aristolochic acid A  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
cocaine  (ISO)
coumarin  (ISO)
Cuprizon  (ISO)
D-glucose  (ISO)
diarsenic trioxide  (ISO)
dihydroartemisinin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP)
etomoxir  (EXP)
eugenol  (EXP)
flavonoids  (EXP)
flutamide  (EXP)
furfural  (ISO)
genistein  (EXP)
glafenine  (EXP)
glucose  (ISO)
haloperidol  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
indometacin  (EXP)
ivermectin  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
p-menthan-3-ol  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenethyl caffeate  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The primary structure of rat ribosomal protein S9. Chan YL, etal., Biochem Biophys Res Commun 1993 May 28;193(1):106-12.
2. The isolation of eukaryotic ribosomal proteins. The purification and characterization of the 40 S ribosomal subunit proteins S2, S3, S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28. Collatz E, etal., J Biol Chem. 1976 Aug 10;251(15):4666-72.
3. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Two-dimensional electrophoretic analysis of ribosomal proteins from chronically injured liver. Gressner AM J Clin Chem Clin Biochem. 1979 Aug;17(8):541-5.
7. Electron microscopic investigations on the location of rat liver ribosomal proteins S3a, S5, S6, S7 and S9 by means of antibody labeling. Lutsch G, etal., Biomed Biochim Acta. 1983;42(6):705-23.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. GOA pipeline RGD automated data pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Characterization of the binding of rat liver ribosomal proteins L6, L8, L19, S9, and S13 to 5.8 S ribosomal ribonucleic acid. Todokoro K, etal., J Biol Chem. 1981 Jul 25;256(14):7207-12.
Additional References at PubMed
PMID:8706699   PMID:8889548   PMID:12477932   PMID:12718447   PMID:15277470   PMID:15489334   PMID:15632090   PMID:15883184   PMID:16452087   PMID:17289661   PMID:18420587   PMID:19946888  
PMID:20458337   PMID:21423176   PMID:21630459   PMID:21700703   PMID:22658674   PMID:23376485   PMID:24625528   PMID:26316108   PMID:30053369  


Genomics

Comparative Map Data
Rps9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,427,084 - 74,430,513 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl174,427,087 - 74,430,105 (-)EnsemblGRCr8
mRatBN7.2165,511,723 - 65,515,076 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,511,723 - 65,515,123 (-)EnsemblmRatBN7.2
Rnor_6.0164,018,325 - 64,021,723 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,018,125 - 64,090,021 (-)Ensemblrn6Rnor6.0
Rnor_5.0163,010,583 - 63,013,972 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4163,824,657 - 63,828,046 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera163,236,829 - 63,240,227 (-)NCBICelera
RGSC_v3.1163,901,399 - 63,904,417 (-)NCBI
Cytogenetic Map1q12NCBI
RPS9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,200,858 - 54,207,647 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,200,484 - 54,249,003 (+)Ensemblhg38GRCh38
GRCh371954,704,726 - 54,711,515 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,396,538 - 59,403,327 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341959,396,830 - 59,403,323NCBI
Celera1951,746,402 - 51,753,191 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1951,020,531 - 51,027,322 (+)NCBIHuRef
CHM1_11954,705,877 - 54,712,666 (+)NCBICHM1_1
T2T-CHM13v2.01957,281,246 - 57,288,035 (+)NCBIT2T-CHM13v2.0
Rps9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,707,035 - 3,709,896 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,706,992 - 3,709,896 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3873,703,954 - 3,706,897 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,703,993 - 3,706,897 (+)Ensemblmm10GRCm38
MGSCv3773,655,643 - 3,658,499 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3673,307,128 - 3,309,984 (+)NCBIMGSCv36mm8
Celera73,617,631 - 3,620,489 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.13NCBI
Rps9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495560473,593 - 76,414 (-)Ensembl
ChiLan1.0NW_00495560473,593 - 76,414 (-)NCBIChiLan1.0ChiLan1.0
RPS9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,204,984 - 60,212,219 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,126,323 - 62,133,553 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,132,900 - 51,139,713 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,974,377 - 59,981,236 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,974,377 - 59,981,236 (+)EnsemblpanPan2panpan1.1
RPS9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,989,338 - 102,995,755 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,989,360 - 103,098,573 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1103,051,249 - 103,057,599 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01103,634,684 - 103,640,864 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,634,715 - 103,640,864 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,277,288 - 103,283,423 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,033,101 - 103,039,442 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,747,981 - 103,754,162 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rps9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,628,946 - 2,633,256 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994304,094 - 308,893 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936994304,617 - 308,855 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,920,934 - 55,927,280 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1655,920,930 - 55,927,280 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,292,175 - 53,298,312 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,865,339 - 46,882,947 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607326,965,181 - 26,972,287 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,389,974 - 2,394,196 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248322,391,268 - 2,394,317 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rps9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12178,292,139 - 178,295,611 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rps9
18 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:138
Count of miRNA genes:122
Interacting mature miRNAs:131
Transcripts:ENSRNOT00000015234
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
RH143335  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
23 13 83 213 91 90 59 159 59 6 491 284 21 192 117 124 31 31 31

Sequence


Ensembl Acc Id: ENSRNOT00000086622   ⟹   ENSRNOP00000074779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl174,427,087 - 74,430,105 (-)Ensembl
mRatBN7.2 Ensembl165,511,723 - 65,515,121 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090819   ⟹   ENSRNOP00000075462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl174,427,817 - 74,430,105 (-)Ensembl
mRatBN7.2 Ensembl165,511,727 - 65,515,074 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091654   ⟹   ENSRNOP00000072986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl174,427,315 - 74,430,105 (-)Ensembl
mRatBN7.2 Ensembl165,511,954 - 65,515,123 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115378   ⟹   ENSRNOP00000079205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,511,723 - 65,514,609 (-)Ensembl
RefSeq Acc Id: NM_001313935   ⟹   NP_001300864
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,427,084 - 74,430,437 (-)NCBI
mRatBN7.2165,511,723 - 65,515,076 (-)NCBI
RefSeq Acc Id: NR_132729
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,427,084 - 74,430,437 (-)NCBI
mRatBN7.2165,511,723 - 65,515,076 (-)NCBI
RefSeq Acc Id: XM_063286977   ⟹   XP_063143047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,427,088 - 74,430,513 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001300864 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143047 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH60560 (Get FASTA)   NCBI Sequence Viewer  
  CAA47013 (Get FASTA)   NCBI Sequence Viewer  
  EDL84925 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074779
  ENSRNOP00000074779.1
  ENSRNOP00000075462
GenBank Protein P29314 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000072986   ⟸   ENSRNOT00000091654
Ensembl Acc Id: ENSRNOP00000079205   ⟸   ENSRNOT00000115378
Ensembl Acc Id: ENSRNOP00000074779   ⟸   ENSRNOT00000086622
Ensembl Acc Id: ENSRNOP00000075462   ⟸   ENSRNOT00000090819
RefSeq Acc Id: NP_001300864   ⟸   NM_001313935
- UniProtKB: Q6P9W7 (UniProtKB/Swiss-Prot),   P29314 (UniProtKB/Swiss-Prot),   A0A8I5ZM91 (UniProtKB/TrEMBL),   A6KS18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_063143047   ⟸   XM_063286977
- Peptide Label: isoform X1
- UniProtKB: A0A8L2RAR7 (UniProtKB/TrEMBL)
Protein Domains
RNA-binding S4   S4 RNA-binding   Small ribosomal subunit protein uS4 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P29314-F1-model_v2 AlphaFold P29314 1-194 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619889 AgrOrtholog
Ensembl Genes ENSRNOG00000058909 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000086622 ENTREZGENE
  ENSRNOT00000086622.2 UniProtKB/Swiss-Prot
  ENSRNOT00000090819 ENTREZGENE
Gene3D-CATH 3.10.290.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6922405 IMAGE-MGC_LOAD
InterPro Ribosomal_S4/S9 UniProtKB/Swiss-Prot
  Ribosomal_S4/S9_euk/arc UniProtKB/Swiss-Prot
  Ribosomal_S4/S9_N UniProtKB/Swiss-Prot
  Ribosomal_S4_CS UniProtKB/Swiss-Prot
  S4_RNA-bd UniProtKB/Swiss-Prot
  S4_RNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report rno:103689992 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72792 IMAGE-MGC_LOAD
NCBI Gene Rps9 ENTREZGENE
PANTHER PTHR11831 UniProtKB/Swiss-Prot
  SMALL RIBOSOMAL SUBUNIT PROTEIN US4 UniProtKB/Swiss-Prot
Pfam PF01479 UniProtKB/Swiss-Prot
  Ribosomal_S4 UniProtKB/Swiss-Prot
PhenoGen Rps9 PhenoGen
PROSITE PS50889 UniProtKB/Swiss-Prot
  RIBOSOMAL_S4 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000058909 RatGTEx
SMART Ribosomal_S4 UniProtKB/Swiss-Prot
  SM00363 UniProtKB/Swiss-Prot
Superfamily-SCOP Alpha-L RNA-binding motif UniProtKB/Swiss-Prot
UniProt A0A0G2K4C4_RAT UniProtKB/TrEMBL
  A0A8I5ZM91 ENTREZGENE
  A0A8L2RAR7 ENTREZGENE, UniProtKB/TrEMBL
  A6KS18 ENTREZGENE, UniProtKB/TrEMBL
  P29314 ENTREZGENE
  Q6P9W7 ENTREZGENE
  RS9_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q6P9W7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-01 Rps9  ribosomal protein S9  Rps9l1  ribosomal protein S9-like 1  Data merged from RGD:9089855 737654 PROVISIONAL
2016-01-26 Rps9l1  ribosomal protein S9-like 1  LOC103689992  40S ribosomal protein S9  Name and Symbol changed 629549 APPROVED
2015-07-29 Rps9  ribosomal protein S9  LOC100909466  40S ribosomal protein S9-like  Data merged from RGD:6503712 737654 PROVISIONAL
2014-08-25 LOC103689992  40S ribosomal protein S9      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100909466  40S ribosomal protein S9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 Rps9  ribosomal protein S9      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rps9  ribosomal protein S9      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 193 amino acids and a molecular weight of 22,360 634030