Grin2c (glutamate ionotropic receptor NMDA type subunit 2C) - Rat Genome Database

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Gene: Grin2c (glutamate ionotropic receptor NMDA type subunit 2C) Rattus norvegicus
Analyze
Symbol: Grin2c
Name: glutamate ionotropic receptor NMDA type subunit 2C
RGD ID: 2739
Description: Enables PDZ domain binding activity; glutamate binding activity; and monoatomic ion channel activity. Involved in ionotropic glutamate receptor signaling pathway; modulation of chemical synaptic transmission; and regulation of monoatomic cation transmembrane transport. Located in postsynaptic membrane. Part of NMDA selective glutamate receptor complex. Orthologous to human GRIN2C (glutamate ionotropic receptor NMDA type subunit 2C); PARTICIPATES IN Alzheimer's disease pathway; amyotrophic lateral sclerosis pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GluN2C; glutamate [NMDA] receptor subunit epsilon-3; Glutamate receptor ionotropic N-methyl D-aspartate 2C; glutamate receptor ionotropic, NMDA 2C; glutamate receptor, ionotropic, N-methyl D-aspartate 2C; glutamate receptor, ionotropic, NMDA2C; N-methyl D-aspartate receptor subtype 2C; NMDA glutamate receptor; NMDAR2C; NR2C
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,987,410 - 101,006,064 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10100,987,513 - 101,005,409 (-)EnsemblGRCr8
mRatBN7.210100,488,430 - 100,507,083 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,488,431 - 100,506,427 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10105,548,769 - 105,566,341 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,011,829 - 105,029,401 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,409,542 - 100,427,149 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,798,290 - 103,816,923 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,798,291 - 103,816,287 (-)Ensemblrn6Rnor6.0
Rnor_5.010104,479,941 - 104,497,938 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410105,323,371 - 105,340,976 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1099,064,978 - 99,082,583 (-)NCBICelera
RGSC_v3.110105,337,754 - 105,355,751 (-)NCBI
Cytogenetic Map10q32.1NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP,ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bexarotene  (EXP)
bisphenol A  (EXP,ISO)
Butylparaben  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
celecoxib  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
clozapine  (EXP)
cocaine  (EXP)
cordycepin  (ISO)
Cuprizon  (EXP)
diazinon  (EXP)
Dibutyl phosphate  (ISO)
dieldrin  (EXP)
dizocilpine maleate  (EXP)
endosulfan  (EXP)
enzacamene  (EXP)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
excitatory amino acid agonist  (ISO)
felbamate  (EXP)
folic acid  (ISO)
fonofos  (ISO)
gentamycin  (EXP)
haloperidol  (EXP)
hydrogen peroxide  (ISO)
indole-3-methanol  (EXP)
kainic acid  (ISO)
ketamine  (EXP)
L-citrulline  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead nitrate  (EXP)
melphalan  (ISO)
menadione  (ISO)
methotrexate  (ISO)
methylmercury chloride  (EXP)
minocycline  (EXP)
Moniliformin  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monosodium L-glutamate  (EXP)
morphine  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (EXP)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
ouabain  (EXP)
p-menthan-3-ol  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
parathion  (ISO)
PCB138  (EXP,ISO)
pentobarbital  (EXP)
phenobarbital  (EXP)
piperonyl butoxide  (EXP)
poly(cytidylic acid)  (EXP)
propanal  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
thalidomide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. NMDA receptor GluRepsilon/NR2 subunits are essential for postsynaptic localization and protein stability of GluRzeta1/NR1 subunit. Abe M, etal., J Neurosci. 2004 Aug 18;24(33):7292-304. doi: 10.1523/JNEUROSCI.1261-04.2004.
2. Pre- and postsynaptic localization of NMDA receptor subunits at hippocampal mossy fibre synapses. Berg LK, etal., Neuroscience. 2013 Jan 29;230:139-50. doi: 10.1016/j.neuroscience.2012.10.061. Epub 2012 Nov 14.
3. Colocalization and hormone regulation of estrogen receptor alpha and N-methyl-D-aspartate receptor in the hypothalamus of female rats. Chakraborty TR, etal., Endocrinology 2003 Jan;144(1):299-305.
4. Regulation of NR1/NR2C N-methyl-D-aspartate (NMDA) receptors by phosphorylation. Chen BS, etal., J Biol Chem. 2006 Jun 16;281(24):16583-90. Epub 2006 Apr 10.
5. Inducible and reversible NR1 knockout reveals crucial role of the NMDA receptor in preserving remote memories in the brain. Cui Z, etal., Neuron. 2004 Mar 4;41(5):781-93. doi: 10.1016/s0896-6273(04)00072-8.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Structural rearrangements of NR1/NR2A NMDA receptors during allosteric inhibition. Gielen M, etal., Neuron. 2008 Jan 10;57(1):80-93. doi: 10.1016/j.neuron.2007.11.021.
8. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
9. Depolarization induces insulin-like growth factor binding protein-2 expression in vivo via NMDA receptor stimulation. Holmin S, etal., Growth Horm IGF Res 2001 Dec;11(6):399-406.
10. Molecular characterization of the family of the N-methyl-D-aspartate receptor subunits. Ishii T, etal., J Biol Chem 1993 Feb 5;268(4):2836-43.
11. CIPP, a novel multivalent PDZ domain protein, selectively interacts with Kir4.0 family members, NMDA receptor subunits, neurexins, and neuroligins. Kurschner C, etal., Mol Cell Neurosci. 1998 Jun;11(3):161-72.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Heteromeric NMDA receptors: molecular and functional distinction of subtypes. Monyer H, etal., Science 1992 May 22;256(5060):1217-21.
14. Differential alterations in the expression of NMDA receptor subunits following chronic ethanol treatment in primary cultures of rat cortical and hippocampal neurones. Nagy J, etal., Neurochem Int 2003 Jan;42(1):35-43.
15. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
16. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
17. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
18. GOA pipeline RGD automated data pipeline
19. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
20. Pituitary adenylate cyclase-activating polypeptide (PACAP(1-38)) enhances N-methyl-D-aspartate receptor function and brain-derived neurotrophic factor expression via RACK1. Yaka R, etal., J Biol Chem 2003 Mar 14;278(11):9630-8.
21. NMDA receptor function is regulated by the inhibitory scaffolding protein, RACK1. Yaka R, etal., Proc Natl Acad Sci U S A 2002 Apr 16;99(8):5710-5. Epub 2002 Apr 9.
22. Control of NMDA receptor function by the NR2 subunit amino-terminal domain. Yuan H, etal., J Neurosci. 2009 Sep 30;29(39):12045-58. doi: 10.1523/JNEUROSCI.1365-09.2009.
23. Distinct structure and gating mechanism in diverse NMDA receptors with GluN2C and GluN2D subunits. Zhang J, etal., Nat Struct Mol Biol. 2023 May;30(5):629-639. doi: 10.1038/s41594-023-00959-z. Epub 2023 Mar 23.
Additional References at PubMed
PMID:1377365   PMID:7569905   PMID:7929101   PMID:8756432   PMID:8987814   PMID:9427357   PMID:9458051   PMID:9512392   PMID:9651389   PMID:9718984   PMID:10197777   PMID:10479680  
PMID:11483648   PMID:11606043   PMID:11792837   PMID:11799243   PMID:11906698   PMID:11936777   PMID:11992467   PMID:12140784   PMID:12408866   PMID:12411521   PMID:12414113   PMID:12428135  
PMID:12775422   PMID:14644469   PMID:14667572   PMID:14983054   PMID:15469880   PMID:15519237   PMID:17961930   PMID:19193935   PMID:19477150   PMID:20887777   PMID:23627311   PMID:24008353  
PMID:26229101   PMID:26875626   PMID:26919761   PMID:27845401   PMID:31969570  


Genomics

Comparative Map Data
Grin2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,987,410 - 101,006,064 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10100,987,513 - 101,005,409 (-)EnsemblGRCr8
mRatBN7.210100,488,430 - 100,507,083 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,488,431 - 100,506,427 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10105,548,769 - 105,566,341 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,011,829 - 105,029,401 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,409,542 - 100,427,149 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,798,290 - 103,816,923 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,798,291 - 103,816,287 (-)Ensemblrn6Rnor6.0
Rnor_5.010104,479,941 - 104,497,938 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410105,323,371 - 105,340,976 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1099,064,978 - 99,082,583 (-)NCBICelera
RGSC_v3.110105,337,754 - 105,355,751 (-)NCBI
Cytogenetic Map10q32.1NCBI
GRIN2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,842,023 - 74,861,532 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,842,022 - 74,861,767 (-)Ensemblhg38GRCh38
GRCh371772,838,162 - 72,856,966 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,349,759 - 70,367,602 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341770,349,762 - 70,367,602NCBI
Celera1769,431,345 - 69,449,257 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,248,662 - 68,267,666 (-)NCBIHuRef
CHM1_11772,902,989 - 72,921,796 (-)NCBICHM1_1
T2T-CHM13v2.01775,733,798 - 75,753,286 (-)NCBIT2T-CHM13v2.0
Grin2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,139,995 - 115,158,123 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,139,995 - 115,158,069 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3811115,249,169 - 115,267,297 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,249,169 - 115,267,243 (-)Ensemblmm10GRCm38
MGSCv3711115,110,483 - 115,128,557 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611115,065,259 - 115,083,333 (-)NCBIMGSCv36mm8
Celera11127,014,742 - 127,032,873 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.8NCBI
Grin2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,729,860 - 1,737,751 (-)Ensembl
ChiLan1.0NW_0049555531,729,431 - 1,746,754 (-)NCBIChiLan1.0ChiLan1.0
GRIN2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,879,305 - 90,898,860 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,702,220 - 95,721,764 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,787,670 - 68,807,192 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,344,940 - 74,363,540 (-)NCBIPanPan1.1PanPan1.1panPan2
GRIN2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,582,404 - 5,595,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,576,681 - 5,595,146 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha96,261,897 - 6,274,915 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.096,254,398 - 6,267,415 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,255,404 - 6,267,017 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,291,347 - 6,304,344 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,401,937 - 6,414,998 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,462,275 - 6,475,342 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Grin2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,200,706 - 6,214,622 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594197,737 - 208,376 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936594197,337 - 208,468 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIN2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,385,406 - 6,401,447 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1126,385,407 - 6,401,454 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,378,936 - 6,390,260 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRIN2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,797,136 - 46,816,703 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,803,535 - 46,816,292 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607717,587,830 - 17,602,104 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Grin2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,697,512 - 4,712,276 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248014,697,891 - 4,713,771 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Grin2c
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1968,836,215 - 68,854,067 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Grin2c
67 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:233
Count of miRNA genes:145
Interacting mature miRNAs:161
Transcripts:ENSRNOT00000004477
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093723381107556066Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1058073360103073360Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)1079272424102982300Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1097202388107556066Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1097202388107556066Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1081012077101828297Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat

Markers in Region
RH132419  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210100,488,625 - 100,488,825 (+)MAPPERmRatBN7.2
Rnor_6.010103,798,486 - 103,798,685NCBIRnor6.0
Rnor_5.010104,497,543 - 104,497,742UniSTSRnor5.0
RGSC_v3.410105,323,446 - 105,323,645UniSTSRGSC3.4
Celera1099,065,053 - 99,065,252UniSTS
Cytogenetic Map10q32.2UniSTS
RH94563  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210100,488,555 - 100,488,747 (+)MAPPERmRatBN7.2
Rnor_6.010103,798,416 - 103,798,607NCBIRnor6.0
Rnor_5.010104,497,621 - 104,497,812UniSTSRnor5.0
RGSC_v3.410105,323,376 - 105,323,567UniSTSRGSC3.4
Celera1099,064,983 - 99,065,174UniSTS
Cytogenetic Map10q32.2UniSTS
Grin2c  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210100,488,917 - 100,489,096 (+)MAPPERmRatBN7.2
Rnor_6.010103,798,778 - 103,798,956NCBIRnor6.0
Rnor_5.010104,497,272 - 104,497,450UniSTSRnor5.0
RGSC_v3.410105,323,738 - 105,323,916UniSTSRGSC3.4
Celera1099,065,345 - 99,065,523UniSTS
Cytogenetic Map10q32.2UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 7 35 158 66 65 34 81 34 6 244 144 9 132 49 71 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001439449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC094435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D13212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M91563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U08259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000004477   ⟹   ENSRNOP00000004477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10100,987,513 - 101,005,409 (-)Ensembl
mRatBN7.2 Ensembl10100,488,431 - 100,506,427 (-)Ensembl
Rnor_6.0 Ensembl10103,798,291 - 103,816,287 (-)Ensembl
RefSeq Acc Id: NM_012575   ⟹   NP_036707
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,531 - 101,005,138 (-)NCBI
mRatBN7.210100,488,551 - 100,506,156 (-)NCBI
Rnor_6.010103,798,411 - 103,816,016 (-)NCBI
Rnor_5.010104,479,941 - 104,497,938 (+)NCBI
RGSC_v3.410105,323,371 - 105,340,976 (-)RGD
Celera1099,064,978 - 99,082,583 (-)RGD
Sequence:
RefSeq Acc Id: XM_006247709   ⟹   XP_006247771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
mRatBN7.210100,488,668 - 100,507,082 (-)NCBI
Rnor_6.010103,798,290 - 103,816,923 (-)NCBI
Rnor_5.010104,479,941 - 104,497,938 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596988   ⟹   XP_017452477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
mRatBN7.210100,488,668 - 100,507,082 (-)NCBI
Rnor_6.010103,798,290 - 103,816,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596989   ⟹   XP_017452478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
mRatBN7.210100,488,668 - 100,507,082 (-)NCBI
Rnor_6.010103,798,290 - 103,816,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596990   ⟹   XP_017452479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
mRatBN7.210100,488,668 - 100,507,082 (-)NCBI
Rnor_6.010103,798,290 - 103,816,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596992   ⟹   XP_017452481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
mRatBN7.210100,488,668 - 100,507,082 (-)NCBI
Rnor_6.010103,798,290 - 103,816,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039085181   ⟹   XP_038941109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
mRatBN7.210100,488,668 - 100,507,082 (-)NCBI
RefSeq Acc Id: XM_039085182   ⟹   XP_038941110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
mRatBN7.210100,488,668 - 100,507,082 (-)NCBI
RefSeq Acc Id: XM_039085184   ⟹   XP_038941112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
mRatBN7.210100,488,668 - 100,507,082 (-)NCBI
RefSeq Acc Id: XM_063268390   ⟹   XP_063124460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
RefSeq Acc Id: XM_063268391   ⟹   XP_063124461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
RefSeq Acc Id: XM_063268392   ⟹   XP_063124462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
RefSeq Acc Id: XM_063268393   ⟹   XP_063124463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
RefSeq Acc Id: XM_063268394   ⟹   XP_063124464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
RefSeq Acc Id: XM_063268395   ⟹   XP_063124465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,006,062 (-)NCBI
RefSeq Acc Id: XM_063268396   ⟹   XP_063124466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 101,003,622 (-)NCBI
RefSeq Acc Id: XM_063268397   ⟹   XP_063124467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,987,410 - 100,995,244 (-)NCBI
RefSeq Acc Id: XR_010055128
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,991,194 - 101,006,064 (-)NCBI
RefSeq Acc Id: NP_036707   ⟸   NM_012575
- UniProtKB: Q00961 (UniProtKB/Swiss-Prot),   Q62644 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247771   ⟸   XM_006247709
- Peptide Label: isoform X2
- UniProtKB: Q00961 (UniProtKB/Swiss-Prot),   Q62644 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452479   ⟸   XM_017596990
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JSH8 (UniProtKB/TrEMBL),   A6HKL2 (UniProtKB/TrEMBL),   Q62644 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452478   ⟸   XM_017596989
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JSH8 (UniProtKB/TrEMBL),   A6HKL2 (UniProtKB/TrEMBL),   Q62644 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452481   ⟸   XM_017596992
- Peptide Label: isoform X2
- UniProtKB: Q00961 (UniProtKB/Swiss-Prot),   Q62644 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452477   ⟸   XM_017596988
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JSH8 (UniProtKB/TrEMBL),   A6HKL2 (UniProtKB/TrEMBL),   Q62644 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004477   ⟸   ENSRNOT00000004477
RefSeq Acc Id: XP_038941110   ⟸   XM_039085182
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JSH8 (UniProtKB/TrEMBL),   A6HKL2 (UniProtKB/TrEMBL),   Q62644 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941112   ⟸   XM_039085184
- Peptide Label: isoform X2
- UniProtKB: Q00961 (UniProtKB/Swiss-Prot),   Q62644 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941109   ⟸   XM_039085181
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124462   ⟸   XM_063268392
- Peptide Label: isoform X1
- UniProtKB: Q62644 (UniProtKB/TrEMBL),   A0A0G2JSH8 (UniProtKB/TrEMBL),   A6HKL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124464   ⟸   XM_063268394
- Peptide Label: isoform X1
- UniProtKB: Q62644 (UniProtKB/TrEMBL),   A0A0G2JSH8 (UniProtKB/TrEMBL),   A6HKL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124465   ⟸   XM_063268395
- Peptide Label: isoform X2
- UniProtKB: Q00961 (UniProtKB/Swiss-Prot),   Q62644 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124463   ⟸   XM_063268393
- Peptide Label: isoform X1
- UniProtKB: Q62644 (UniProtKB/TrEMBL),   A0A0G2JSH8 (UniProtKB/TrEMBL),   A6HKL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124460   ⟸   XM_063268390
- Peptide Label: isoform X1
- UniProtKB: Q62644 (UniProtKB/TrEMBL),   A0A0G2JSH8 (UniProtKB/TrEMBL),   A6HKL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124461   ⟸   XM_063268391
- Peptide Label: isoform X1
- UniProtKB: Q62644 (UniProtKB/TrEMBL),   A0A0G2JSH8 (UniProtKB/TrEMBL),   A6HKL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124466   ⟸   XM_063268396
- Peptide Label: isoform X2
- UniProtKB: Q00961 (UniProtKB/Swiss-Prot),   Q62644 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124467   ⟸   XM_063268397
- Peptide Label: isoform X3
Protein Domains
Ionotropic glutamate receptor C-terminal   Ionotropic glutamate receptor L-glutamate and

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q00961-F1-model_v2 AlphaFold Q00961 1-1237 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2739 AgrOrtholog
BioCyc Gene G2FUF-22694 BioCyc
Ensembl Genes ENSRNOG00000003280 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000004477 ENTREZGENE
Gene3D-CATH 3.40.50.2300 UniProtKB/Swiss-Prot
  Periplasmic binding protein-like II UniProtKB/Swiss-Prot
InterPro ANF_lig-bd_rcpt UniProtKB/Swiss-Prot
  Glu/Gly-bd UniProtKB/Swiss-Prot
  Iono_rcpt_met UniProtKB/Swiss-Prot
  Ionotropic_Glu_rcpt UniProtKB/Swiss-Prot
  Iontro_rcpt UniProtKB/Swiss-Prot
  NMDAR2_C UniProtKB/Swiss-Prot
  Peripla_BP_I UniProtKB/Swiss-Prot
KEGG Report rno:24411 UniProtKB/Swiss-Prot
NCBI Gene 24411 ENTREZGENE
PANTHER IONOTROPIC GLUTAMATE RECEPTOR UniProtKB/Swiss-Prot
Pfam ANF_receptor UniProtKB/Swiss-Prot
  Lig_chan UniProtKB/Swiss-Prot
  Lig_chan-Glu_bd UniProtKB/Swiss-Prot
  NMDAR2_C UniProtKB/Swiss-Prot
PhenoGen Grin2c PhenoGen
PRINTS NMDARECEPTOR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003280 RatGTEx
SMART Lig_chan-Glu_bd UniProtKB/Swiss-Prot
  PBPe UniProtKB/Swiss-Prot
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/Swiss-Prot
  SSF53822 UniProtKB/Swiss-Prot
UniProt A0A0G2JSH8 ENTREZGENE, UniProtKB/TrEMBL
  A6HKL2 ENTREZGENE, UniProtKB/TrEMBL
  NMDE3_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q62644 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Grin2c  glutamate ionotropic receptor NMDA type subunit 2C  Grin2c  glutamate receptor, ionotropic, N-methyl D-aspartate 2C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-15 Grin2c  glutamate receptor, ionotropic, N-methyl D-aspartate 2C  Grin2c  glutamate receptor, ionotropic, NMDA2C   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Grin2c  glutamate receptor, ionotropic, NMDA2C     Glutamate receptor, ionotropic, N-methyl D-aspartate 2C  Name updated 625702 APPROVED
2002-06-10 Grin2c  Glutamate receptor, ionotropic, N-methyl D-aspartate 2C      Symbol and Name status set to approved 70586 APPROVED