Symbol:
Efnb1
Name:
ephrin B1
RGD ID:
2540
Description:
Predicted to enable ephrin receptor binding activity. Involved in presynapse assembly. Located in synapse. Is active in glutamatergic synapse and presynaptic membrane. Human ortholog(s) of this gene implicated in craniofrontonasal syndrome and dysostosis. Orthologous to human EFNB1 (ephrin B1); PARTICIPATES IN altered ephrin - ephrin receptor bidirectional signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 4,4'-sulfonyldiphenol.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
EFL-3; ELK ligand; ELK-L; EPH-related receptor tyrosine kinase ligand 2; ephrin-B1; LERK-2; LERK2
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
EFNB1 (ephrin B1)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):
Efnb1 (ephrin B1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Efnb1 (ephrin B1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
EFNB1 (ephrin B1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
EFNB1 (ephrin B1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Efnb1 (ephrin B1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
EFNB1 (ephrin B1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
EFNB1 (ephrin B1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Efnb1 (ephrin B1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Mus musculus (house mouse):
Efnb1 (ephrin B1)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Homo sapiens (human):
EFNB1 (ephrin B1)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
efnb1 (ephrin-B1)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Caenorhabditis elegans (roundworm):
efn-2
Alliance
DIOPT (Ensembl Compara|Hieranoid|OrthoFinder|OrthoInspector|PANTHER|SonicParanoid)
Drosophila melanogaster (fruit fly):
Ephrin
Alliance
DIOPT (Ensembl Compara|Hieranoid|OrthoFinder|OrthoInspector|PANTHER)
Caenorhabditis elegans (roundworm):
vab-2
Alliance
DIOPT (Ensembl Compara|InParanoid|OrthoFinder|PANTHER)
Xenopus tropicalis (tropical clawed frog):
efnb1
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 X 68,297,529 - 68,310,335 (+) NCBI GRCr8 mRatBN7.2 X 64,257,351 - 64,270,158 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl X 64,257,351 - 64,270,157 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx X 65,740,847 - 65,753,653 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 X 69,241,199 - 69,254,005 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 X 66,802,140 - 66,814,947 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 X 68,891,227 - 68,904,034 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl X 68,891,227 - 68,904,038 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 X 69,764,314 - 69,777,121 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 X 87,163,176 - 87,175,982 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 X 87,236,467 - 87,249,273 (+) NCBI Celera X 64,624,957 - 64,637,749 (+) NCBI Celera Cytogenetic Map X q22 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Efnb1 Rat 1,2-dimethylhydrazine multiple interactions ISO Efnb1 (Mus musculus) 6480464 [1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of EFNB1 mRNA CTD PMID:22206623 Efnb1 Rat 17alpha-ethynylestradiol affects expression ISO Efnb1 (Mus musculus) 6480464 Ethinyl Estradiol affects the expression of EFNB1 mRNA CTD PMID:17555576 Efnb1 Rat 17beta-estradiol affects expression ISO Efnb1 (Mus musculus) 6480464 Estradiol affects the expression of EFNB1 mRNA CTD PMID:15598610 Efnb1 Rat 2,3,7,8-tetrachlorodibenzodioxine multiple interactions EXP 6480464 [Tetrachlorodibenzodioxin binds to and results in increased activity of AHR protein] which results in decreased expression of EFNB1 mRNA CTD PMID:21602191 Efnb1 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression EXP 6480464 Tetrachlorodibenzodioxin results in decreased expression of EFNB1 mRNA CTD PMID:33387578 Efnb1 Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression EXP 6480464 Tetrachlorodibenzodioxin results in increased expression of EFNB1 mRNA CTD PMID:34747641 Efnb1 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO Efnb1 (Mus musculus) 6480464 Tetrachlorodibenzodioxin affects the expression of EFNB1 mRNA CTD PMID:21570461 Efnb1 Rat 2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expression ISO Efnb1 (Mus musculus) 6480464 2 more ... CTD PMID:38648751 Efnb1 Rat 3,3',4,4',5-pentachlorobiphenyl decreases expression EXP 6480464 3 more ... CTD PMID:23196670 Efnb1 Rat 3-isobutyl-1-methyl-7H-xanthine multiple interactions ISO EFNB1 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of EFNB1 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of EFNB1 mRNA CTD PMID:28628672 Efnb1 Rat 3-methylcholanthrene increases expression ISO Efnb1 (Mus musculus) 6480464 Methylcholanthrene results in increased expression of EFNB1 mRNA CTD PMID:20713471 Efnb1 Rat 4,4'-sulfonyldiphenol multiple interactions EXP 6480464 [bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of EFNB1 mRNA CTD PMID:36041667 Efnb1 Rat 6-propyl-2-thiouracil increases expression EXP 6480464 Propylthiouracil results in increased expression of EFNB1 mRNA CTD PMID:24780913 Efnb1 Rat acrylamide decreases expression ISO EFNB1 (Homo sapiens) 6480464 Acrylamide results in decreased expression of EFNB1 mRNA CTD PMID:32763439 Efnb1 Rat actinomycin D multiple interactions ISO EFNB1 (Homo sapiens) 6480464 [Dactinomycin co-treated with nutlin 3] results in increased expression of EFNB1 mRNA CTD PMID:38460933 Efnb1 Rat aflatoxin B1 increases expression ISO EFNB1 (Homo sapiens) 6480464 Aflatoxin B1 results in increased expression of EFNB1 mRNA CTD PMID:21641981 and PMID:22100608 Efnb1 Rat aflatoxin B1 decreases methylation ISO EFNB1 (Homo sapiens) 6480464 Aflatoxin B1 results in decreased methylation of EFNB1 gene CTD PMID:27153756 Efnb1 Rat all-trans-retinoic acid increases expression ISO Efnb1 (Mus musculus) 6480464 Tretinoin results in increased expression of EFNB1 mRNA CTD PMID:16604517 Efnb1 Rat all-trans-retinoic acid decreases expression ISO EFNB1 (Homo sapiens) 6480464 Tretinoin results in decreased expression of EFNB1 mRNA CTD PMID:23724009 Efnb1 Rat ammonium chloride affects expression EXP 6480464 Ammonium Chloride affects the expression of EFNB1 mRNA CTD PMID:16483693 Efnb1 Rat aristolochic acid A increases expression ISO EFNB1 (Homo sapiens) 6480464 aristolochic acid I results in increased expression of EFNB1 mRNA CTD PMID:33212167 Efnb1 Rat arsane increases expression ISO Efnb1 (Mus musculus) 6480464 Arsenic results in increased expression of EFNB1 mRNA CTD PMID:24019935 Efnb1 Rat arsenic atom increases expression ISO Efnb1 (Mus musculus) 6480464 Arsenic results in increased expression of EFNB1 mRNA CTD PMID:24019935 Efnb1 Rat arsenite(3-) increases expression ISO Efnb1 (Mus musculus) 6480464 arsenite results in increased expression of EFNB1 mRNA CTD PMID:33053406 Efnb1 Rat atrazine increases expression ISO EFNB1 (Homo sapiens) 6480464 Atrazine results in increased expression of EFNB1 mRNA CTD PMID:22378314 Efnb1 Rat benzo[a]pyrene increases expression ISO EFNB1 (Homo sapiens) 6480464 Benzo(a)pyrene results in increased expression of EFNB1 mRNA CTD PMID:22316170 and PMID:32234424 Efnb1 Rat benzo[a]pyrene decreases methylation ISO EFNB1 (Homo sapiens) 6480464 Benzo(a)pyrene results in decreased methylation of EFNB1 3' UTR CTD PMID:27901495 Efnb1 Rat benzo[a]pyrene affects methylation ISO EFNB1 (Homo sapiens) 6480464 Benzo(a)pyrene affects the methylation of EFNB1 5' UTR and Benzo(a)pyrene affects the methylation of EFNB1 promoter CTD PMID:27901495 Efnb1 Rat benzo[a]pyrene multiple interactions ISO Efnb1 (Mus musculus) 6480464 [Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of EFNB1 mRNA CTD PMID:27858113 Efnb1 Rat benzo[b]fluoranthene decreases expression ISO Efnb1 (Mus musculus) 6480464 benzo(b)fluoranthene results in decreased expression of EFNB1 mRNA CTD PMID:26377693 Efnb1 Rat benzo[b]fluoranthene multiple interactions ISO Efnb1 (Mus musculus) 6480464 [Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of EFNB1 mRNA CTD PMID:27858113 Efnb1 Rat beta-lapachone increases expression ISO EFNB1 (Homo sapiens) 6480464 beta-lapachone results in increased expression of EFNB1 mRNA CTD PMID:38218311 Efnb1 Rat bis(2-ethylhexyl) phthalate decreases expression ISO Efnb1 (Mus musculus) 6480464 Diethylhexyl Phthalate results in decreased expression of EFNB1 mRNA CTD PMID:34319233 Efnb1 Rat bisphenol A affects expression EXP 6480464 bisphenol A affects the expression of EFNB1 mRNA CTD PMID:25181051 Efnb1 Rat bisphenol A multiple interactions EXP 6480464 [bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of EFNB1 mRNA CTD PMID:36041667 Efnb1 Rat bisphenol A decreases methylation ISO EFNB1 (Homo sapiens) 6480464 bisphenol A results in decreased methylation of EFNB1 gene CTD PMID:31601247 Efnb1 Rat bisphenol A increases expression ISO Efnb1 (Mus musculus) 6480464 bisphenol A results in increased expression of EFNB1 mRNA CTD PMID:34585602 Efnb1 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of EFNB1 mRNA CTD PMID:30816183 and PMID:32528016 Efnb1 Rat bisphenol A multiple interactions ISO EFNB1 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of EFNB1 mRNA CTD PMID:28628672 Efnb1 Rat bisphenol F multiple interactions ISO EFNB1 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of EFNB1 mRNA CTD PMID:28628672 Efnb1 Rat bisphenol F multiple interactions EXP 6480464 [bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of EFNB1 mRNA CTD PMID:36041667 Efnb1 Rat cadmium atom decreases expression ISO Efnb1 (Mus musculus) 6480464 Cadmium results in decreased expression of EFNB1 mRNA CTD PMID:24067728 Efnb1 Rat cadmium dichloride decreases expression ISO EFNB1 (Homo sapiens) 6480464 Cadmium Chloride results in decreased expression of EFNB1 mRNA CTD PMID:26472689 and PMID:38568856 Efnb1 Rat camptothecin increases expression ISO EFNB1 (Homo sapiens) 6480464 Camptothecin results in increased expression of EFNB1 mRNA CTD PMID:38460933 Efnb1 Rat carbon nanotube decreases expression ISO EFNB1 (Homo sapiens) 6480464 Nanotubes and Carbon results in decreased expression of EFNB1 mRNA CTD PMID:25511174 Efnb1 Rat carbon nanotube decreases expression ISO Efnb1 (Mus musculus) 6480464 Nanotubes more ... CTD PMID:25554681 Efnb1 Rat CGP 52608 multiple interactions ISO EFNB1 (Homo sapiens) 6480464 CGP 52608 promotes the reaction [RORA protein binds to EFNB1 gene] CTD PMID:28238834 Efnb1 Rat chlorpyrifos decreases expression ISO Efnb1 (Mus musculus) 6480464 Chlorpyrifos results in decreased expression of EFNB1 mRNA CTD PMID:20350560 Efnb1 Rat chrysene decreases expression ISO Efnb1 (Mus musculus) 6480464 chrysene results in decreased expression of EFNB1 mRNA CTD PMID:26377693 Efnb1 Rat chrysene multiple interactions ISO Efnb1 (Mus musculus) 6480464 [Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of EFNB1 mRNA CTD PMID:27858113 Efnb1 Rat cisplatin multiple interactions ISO EFNB1 (Homo sapiens) 6480464 [Cisplatin co-treated with jinfukang] results in increased expression of EFNB1 mRNA CTD PMID:27392435 Efnb1 Rat cisplatin increases expression ISO EFNB1 (Homo sapiens) 6480464 Cisplatin results in increased expression of EFNB1 mRNA CTD PMID:27392435 and PMID:27594783 Efnb1 Rat cocaine increases expression EXP 6480464 Cocaine results in increased expression of EFNB1 mRNA CTD PMID:15691709 and PMID:17898221 Efnb1 Rat Cuprizon increases expression EXP 6480464 Cuprizone results in increased expression of EFNB1 mRNA CTD PMID:26577399 Efnb1 Rat dexamethasone multiple interactions ISO EFNB1 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of EFNB1 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of EFNB1 mRNA CTD PMID:28628672 Efnb1 Rat Dibutyl phosphate affects expression ISO EFNB1 (Homo sapiens) 6480464 di-n-butylphosphoric acid affects the expression of EFNB1 mRNA CTD PMID:37042841 Efnb1 Rat dibutyl phthalate decreases expression ISO Efnb1 (Mus musculus) 6480464 Dibutyl Phthalate results in decreased expression of EFNB1 mRNA CTD PMID:21266533 Efnb1 Rat doxorubicin increases expression ISO EFNB1 (Homo sapiens) 6480464 Doxorubicin results in increased expression of EFNB1 mRNA CTD PMID:29803840 Efnb1 Rat endosulfan decreases expression EXP 6480464 Endosulfan results in decreased expression of EFNB1 mRNA CTD PMID:29391264 Efnb1 Rat fenthion decreases expression ISO Efnb1 (Mus musculus) 6480464 Fenthion results in decreased expression of EFNB1 mRNA CTD PMID:34813904 Efnb1 Rat folic acid multiple interactions ISO Efnb1 (Mus musculus) 6480464 [1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of EFNB1 mRNA CTD PMID:22206623 Efnb1 Rat FR900359 decreases phosphorylation ISO EFNB1 (Homo sapiens) 6480464 FR900359 results in decreased phosphorylation of EFNB1 protein CTD PMID:37730182 Efnb1 Rat furan increases methylation EXP 6480464 furan results in increased methylation of EFNB1 gene CTD PMID:22079235 Efnb1 Rat gentamycin decreases expression EXP 6480464 Gentamicins results in decreased expression of EFNB1 mRNA CTD PMID:22061828 and PMID:33387578 Efnb1 Rat glyphosate increases expression EXP 6480464 Glyphosate results in increased expression of EFNB1 mRNA CTD PMID:38314887 Efnb1 Rat indometacin multiple interactions ISO EFNB1 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of EFNB1 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of EFNB1 mRNA CTD PMID:28628672 Efnb1 Rat isobutanol multiple interactions ISO EFNB1 (Homo sapiens) 6480464 [[Gasoline co-treated with isobutyl alcohol] results in increased abundance of [Particulate Matter co-treated with Polycyclic Aromatic Hydrocarbons]] which results in increased expression of EFNB1 mRNA CTD PMID:29432896 Efnb1 Rat leflunomide decreases expression ISO EFNB1 (Homo sapiens) 6480464 leflunomide results in decreased expression of EFNB1 mRNA CTD PMID:28988120 Efnb1 Rat maneb multiple interactions ISO Efnb1 (Mus musculus) 6480464 [LRRK2 protein mutant form co-treated with Maneb co-treated with Paraquat] results in decreased expression of EFNB1 mRNA CTD PMID:23017109 Efnb1 Rat mercury atom increases expression ISO EFNB1 (Homo sapiens) 6480464 Mercury results in increased expression of EFNB1 mRNA CTD PMID:16823088 Efnb1 Rat mercury(0) increases expression ISO EFNB1 (Homo sapiens) 6480464 Mercury results in increased expression of EFNB1 mRNA CTD PMID:16823088 Efnb1 Rat methamphetamine increases expression EXP 6480464 Methamphetamine results in increased expression of EFNB1 mRNA CTD PMID:19564919 Efnb1 Rat methidathion decreases expression ISO Efnb1 (Mus musculus) 6480464 methidathion results in decreased expression of EFNB1 mRNA CTD PMID:34813904 Efnb1 Rat methotrexate affects expression ISO Efnb1 (Mus musculus) 6480464 Methotrexate affects the expression of EFNB1 mRNA CTD PMID:18502557 Efnb1 Rat nitrofen decreases expression EXP 6480464 nitrofen results in decreased expression of EFNB1 mRNA and nitrofen results in decreased expression of EFNB1 protein CTD PMID:30469162 Efnb1 Rat Nutlin-3 multiple interactions ISO EFNB1 (Homo sapiens) 6480464 [Dactinomycin co-treated with nutlin 3] results in increased expression of EFNB1 mRNA CTD PMID:38460933 Efnb1 Rat ozone multiple interactions ISO Efnb1 (Mus musculus) 6480464 [Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of EFNB1 mRNA and [Air Pollutants results in increased abundance of Ozone] which results in decreased expression of EFNB1 mRNA CTD PMID:34911549 Efnb1 Rat paraquat multiple interactions ISO Efnb1 (Mus musculus) 6480464 [LRRK2 protein mutant form co-treated with Maneb co-treated with Paraquat] results in decreased expression of EFNB1 mRNA CTD PMID:23017109 Efnb1 Rat pentachlorophenol increases expression ISO Efnb1 (Mus musculus) 6480464 Pentachlorophenol results in increased expression of EFNB1 mRNA CTD PMID:23892564 Efnb1 Rat phenobarbital affects expression ISO EFNB1 (Homo sapiens) 6480464 Phenobarbital affects the expression of EFNB1 mRNA CTD PMID:19159669 Efnb1 Rat phenobarbital affects expression ISO Efnb1 (Mus musculus) 6480464 Phenobarbital affects the expression of EFNB1 mRNA CTD PMID:23091169 Efnb1 Rat pirinixic acid increases expression ISO Efnb1 (Mus musculus) 6480464 pirinixic acid results in increased expression of EFNB1 mRNA CTD PMID:18301758 Efnb1 Rat potassium dichromate increases expression ISO EFNB1 (Homo sapiens) 6480464 Potassium Dichromate results in increased expression of EFNB1 protein CTD PMID:23718831 Efnb1 Rat propiconazole decreases expression ISO Efnb1 (Mus musculus) 6480464 propiconazole results in decreased expression of EFNB1 mRNA CTD PMID:21278054 Efnb1 Rat SB 431542 multiple interactions ISO EFNB1 (Homo sapiens) 6480464 [LDN 193189 co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide co-treated with FGF2 protein] results in increased expression of EFNB1 protein CTD PMID:37664457 Efnb1 Rat SCH 23390 increases expression EXP 6480464 SCH 23390 results in increased expression of EFNB1 mRNA CTD PMID:19564919 Efnb1 Rat sodium arsenite decreases expression ISO Efnb1 (Mus musculus) 6480464 sodium arsenite results in decreased expression of EFNB1 mRNA CTD PMID:16014739 Efnb1 Rat sodium arsenite decreases expression EXP 6480464 sodium arsenite results in decreased expression of EFNB1 mRNA CTD PMID:35314868 Efnb1 Rat sodium arsenite increases expression ISO EFNB1 (Homo sapiens) 6480464 sodium arsenite results in increased expression of EFNB1 mRNA CTD PMID:34032870 Efnb1 Rat Soman increases expression EXP 6480464 Soman results in increased expression of EFNB1 mRNA CTD PMID:19281266 Efnb1 Rat tetraphene multiple interactions ISO Efnb1 (Mus musculus) 6480464 [Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of EFNB1 mRNA CTD PMID:27858113 Efnb1 Rat Theaflavin 3,3'-digallate affects expression ISO EFNB1 (Homo sapiens) 6480464 theaflavin-3 and 3'-digallate affects the expression of EFNB1 mRNA CTD PMID:34925699 Efnb1 Rat thioacetamide increases expression EXP 6480464 Thioacetamide results in increased expression of EFNB1 mRNA CTD PMID:34492290 Efnb1 Rat thiram increases expression ISO EFNB1 (Homo sapiens) 6480464 Thiram results in increased expression of EFNB1 mRNA CTD PMID:38568856 Efnb1 Rat titanium dioxide increases methylation ISO Efnb1 (Mus musculus) 6480464 titanium dioxide results in increased methylation of EFNB1 gene CTD PMID:35295148 Efnb1 Rat trichloroethene increases expression ISO Efnb1 (Mus musculus) 6480464 Trichloroethylene results in increased expression of EFNB1 mRNA CTD PMID:15363585 Efnb1 Rat triphenyl phosphate affects expression ISO EFNB1 (Homo sapiens) 6480464 triphenyl phosphate affects the expression of EFNB1 mRNA CTD PMID:37042841 Efnb1 Rat urethane increases expression ISO EFNB1 (Homo sapiens) 6480464 Urethane results in increased expression of EFNB1 mRNA CTD PMID:28818685 Efnb1 Rat valproic acid affects expression ISO Efnb1 (Mus musculus) 6480464 Valproic Acid affects the expression of EFNB1 mRNA CTD PMID:17292431 Efnb1 Rat valproic acid increases methylation ISO EFNB1 (Homo sapiens) 6480464 Valproic Acid results in increased methylation of EFNB1 gene CTD PMID:29154799 Efnb1 Rat vinclozolin decreases expression EXP 6480464 vinclozolin results in decreased expression of EFNB1 mRNA CTD PMID:18042343
Imported Annotations - PID (archival)
1,2-dimethylhydrazine (ISO) 17alpha-ethynylestradiol (ISO) 17beta-estradiol (ISO) 2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO) 2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO) 3,3',4,4',5-pentachlorobiphenyl (EXP) 3-isobutyl-1-methyl-7H-xanthine (ISO) 3-methylcholanthrene (ISO) 4,4'-sulfonyldiphenol (EXP) 6-propyl-2-thiouracil (EXP) acrylamide (ISO) actinomycin D (ISO) aflatoxin B1 (ISO) all-trans-retinoic acid (ISO) ammonium chloride (EXP) aristolochic acid A (ISO) arsane (ISO) arsenic atom (ISO) arsenite(3-) (ISO) atrazine (ISO) benzo[a]pyrene (ISO) benzo[b]fluoranthene (ISO) beta-lapachone (ISO) bis(2-ethylhexyl) phthalate (ISO) bisphenol A (EXP,ISO) bisphenol F (EXP,ISO) cadmium atom (ISO) cadmium dichloride (ISO) camptothecin (ISO) carbon nanotube (ISO) CGP 52608 (ISO) chlorpyrifos (ISO) chrysene (ISO) cisplatin (ISO) cocaine (EXP) Cuprizon (EXP) dexamethasone (ISO) Dibutyl phosphate (ISO) dibutyl phthalate (ISO) doxorubicin (ISO) endosulfan (EXP) fenthion (ISO) folic acid (ISO) FR900359 (ISO) furan (EXP) gentamycin (EXP) glyphosate (EXP) indometacin (ISO) isobutanol (ISO) leflunomide (ISO) maneb (ISO) mercury atom (ISO) mercury(0) (ISO) methamphetamine (EXP) methidathion (ISO) methotrexate (ISO) nitrofen (EXP) Nutlin-3 (ISO) ozone (ISO) paraquat (ISO) pentachlorophenol (ISO) phenobarbital (ISO) pirinixic acid (ISO) potassium dichromate (ISO) propiconazole (ISO) SB 431542 (ISO) SCH 23390 (EXP) sodium arsenite (EXP,ISO) Soman (EXP) tetraphene (ISO) Theaflavin 3,3'-digallate (ISO) thioacetamide (EXP) thiram (ISO) titanium dioxide (ISO) trichloroethene (ISO) triphenyl phosphate (ISO) urethane (ISO) valproic acid (ISO) vinclozolin (EXP)
Biological Process
axon guidance (IBA,IEA,ISO,TAS) embryonic pattern specification (IEA,ISO) ephrin receptor signaling pathway (IBA,IEA,TAS) nervous system development (IMP) neural crest cell migration (IEA,ISO) positive regulation of T cell proliferation (IEA,ISO) presynapse assembly (IDA,IMP) regulation of autophagosome assembly (IEA,ISO) T cell costimulation (IEA,ISO) T cell proliferation (IEA,ISO)
1.
LERK-2, a binding protein for the receptor-tyrosine kinase ELK, is evolutionarily conserved and expressed in a developmentally regulated pattern.
Fletcher FA, etal., Oncogene 1994 Nov;9(11):3241-7.
2.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.
Rat ISS GO annotations from GOA human gene data--August 2006
GOA data from the GO Consortium
4.
Expression profile of EFNB1, EFNB2, two ligands of EPHB2 in human gastric cancer.
Kataoka H, etal., J Cancer Res Clin Oncol. 2002 Jul;128(7):343-8. doi: 10.1007/s00432-002-0355-0. Epub 2002 Jun 26.
5.
Ephrin-B1 and ephrin-B2 mediate EphB-dependent presynaptic development via syntenin-1.
McClelland AC, etal., Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20487-92. doi: 10.1073/pnas.0811862106. Epub 2009 Nov 13.
6.
Rat ISS GO annotations from MGI mouse gene data--August 2006
MGD data from the GO Consortium
7.
Ephrin-B1 promotes dendrite outgrowth on cerebellar granule neurons.
Moreno-Flores MT, etal., Mol Cell Neurosci 2002 Jul;20(3):429-46.
8.
Electronic Transfer of LocusLink and RefSeq Data
NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.
OMIM Disease Annotation Pipeline
OMIM Disease Annotation Pipeline
10.
PID Annotation Import Pipeline
Pipeline to import Pathway Interaction Database annotations from NCI into RGD
11.
GOA pipeline
RGD automated data pipeline
12.
ClinVar Automated Import and Annotation Pipeline
RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13.
Data Import for Chemical-Gene Interactions
RGD automated import pipeline for gene-chemical interactions
14.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
15.
The role of ephrins and Eph receptors in cancer.
Surawska H, etal., Cytokine Growth Factor Rev 2004 Dec;15(6):419-33.
16.
PDZ proteins bind, cluster, and synaptically colocalize with Eph receptors and their ephrin ligands.
Torres R, etal., Neuron. 1998 Dec;21(6):1453-63.
17.
Mutations of the ephrin-B1 gene cause craniofrontonasal syndrome.
Wieland I, etal., Am J Hum Genet. 2004 Jun;74(6):1209-15. Epub 2004 Apr 29.
Efnb1 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 X 68,297,529 - 68,310,335 (+) NCBI GRCr8 mRatBN7.2 X 64,257,351 - 64,270,158 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl X 64,257,351 - 64,270,157 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx X 65,740,847 - 65,753,653 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 X 69,241,199 - 69,254,005 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 X 66,802,140 - 66,814,947 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 X 68,891,227 - 68,904,034 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl X 68,891,227 - 68,904,038 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 X 69,764,314 - 69,777,121 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 X 87,163,176 - 87,175,982 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 X 87,236,467 - 87,249,273 (+) NCBI Celera X 64,624,957 - 64,637,749 (+) NCBI Celera Cytogenetic Map X q22 NCBI
EFNB1 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 X 68,829,021 - 68,842,160 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl X 68,829,021 - 68,842,160 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 X 68,048,864 - 68,062,003 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 X 67,965,556 - 67,978,728 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 X 67,831,851 - 67,845,023 NCBI Celera X 68,401,732 - 68,414,899 (+) NCBI Celera Cytogenetic Map X q13.1 NCBI HuRef X 61,874,538 - 61,887,692 (+) NCBI HuRef CHM1_1 X 67,941,979 - 67,955,149 (+) NCBI CHM1_1 T2T-CHM13v2.0 X 67,262,362 - 67,275,507 (+) NCBI T2T-CHM13v2.0
Efnb1 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 X 98,179,667 - 98,192,628 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl X 98,179,736 - 98,192,597 (+) Ensembl GRCm39 Ensembl GRCm38 X 99,136,061 - 99,149,022 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl X 99,136,130 - 99,148,991 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 X 96,331,469 - 96,344,330 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 X 95,338,849 - 95,351,710 (+) NCBI MGSCv36 mm8 Celera X 86,077,235 - 86,090,145 (+) NCBI Celera Cytogenetic Map X C3 NCBI cM Map X 43.22 NCBI
Efnb1 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955475 8,360,465 - 8,373,578 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955475 8,360,504 - 8,372,431 (+) NCBI ChiLan1.0 ChiLan1.0
EFNB1 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 X 68,484,373 - 68,497,581 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 X 68,488,001 - 68,501,112 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 X 58,075,744 - 58,088,838 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 X 68,139,078 - 68,152,127 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl X 68,139,078 - 68,152,131 (+) Ensembl panpan1.1 panPan2
EFNB1 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 X 53,292,407 - 53,303,824 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl X 53,292,565 - 53,304,600 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha X 44,117,929 - 44,130,926 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 X 54,257,764 - 54,270,762 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl X 54,257,610 - 54,436,363 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 X 52,225,889 - 52,238,885 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 X 53,554,687 - 53,567,686 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 X 53,478,390 - 53,491,387 (+) NCBI UU_Cfam_GSD_1.0
Efnb1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
EFNB1 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl X 54,948,342 - 54,973,629 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 X 54,947,339 - 54,961,403 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 X 62,073,418 - 62,080,778 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
EFNB1 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 X 58,668,572 - 58,681,583 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl X 58,668,581 - 58,681,855 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666065 523,181 - 536,271 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Efnb1 (Heterocephalus glaber - naked mole-rat)
.
Predicted Target Of
Count of predictions: 457 Count of miRNA genes: 238 Interacting mature miRNAs: 305 Transcripts: ENSRNOT00000009635 Prediction methods: Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan Result types: miRGate_prediction
61430 Cia18 Collagen induced arthritis QTL 18 3.1 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) X 14843113 120568734 Rat 738035 Stresp1 Stress response QTL 1 4.96 0.000011 stress-related behavior trait (VT:0010451) defensive burying - coping X 41304447 112935181 Rat 70221 Bp56 Blood pressure QTL 56 4.9 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) X 57042141 65612192 Rat 1598837 Memor13 Memory QTL 13 3.2 exploratory behavior trait (VT:0010471) difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678) X 41052407 146860749 Rat
AA964352
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 X 64,269,831 - 64,270,039 (+) MAPPER mRatBN7.2 Rnor_6.0 X 68,903,708 - 68,903,915 NCBI Rnor6.0 Rnor_5.0 X 69,776,795 - 69,777,002 UniSTS Rnor5.0 RGSC_v3.4 X 87,175,656 - 87,175,863 UniSTS RGSC3.4 Celera X 64,637,423 - 64,637,630 UniSTS Cytogenetic Map X q22.1 UniSTS
EFNB1_609
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 X 64,268,788 - 64,269,460 (+) MAPPER mRatBN7.2 Rnor_6.0 X 68,902,665 - 68,903,336 NCBI Rnor6.0 Rnor_5.0 X 69,775,752 - 69,776,423 UniSTS Rnor5.0 RGSC_v3.4 X 87,174,613 - 87,175,284 UniSTS RGSC3.4 Celera X 64,636,394 - 64,637,065 UniSTS Cytogenetic Map X q22.1 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000009635 ⟹ ENSRNOP00000009635
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl X 64,257,351 - 64,270,157 (+) Ensembl Rnor_6.0 Ensembl X 68,891,227 - 68,904,038 (+) Ensembl
RefSeq Acc Id:
NM_017089 ⟹ NP_058785
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 X 68,297,529 - 68,310,335 (+) NCBI mRatBN7.2 X 64,257,351 - 64,270,158 (+) NCBI Rnor_6.0 X 68,891,227 - 68,904,034 (+) NCBI Rnor_5.0 X 69,764,314 - 69,777,121 (+) NCBI RGSC_v3.4 X 87,163,176 - 87,175,982 (+) RGD Celera X 64,624,957 - 64,637,749 (+) RGD
Sequence:
CGCTGGACAGCAGTGGGGGGTGTGTGAGATTCGCACTGACTGCCGACACTCCGGCTCAATCGCCGGGGATTAAGGACTTGGCGACCCGGCTGCCGGGCTGCCCGGCCGAGGCTTCAGAGGCGCAAATT GATGGGACTGATTTGCTCAGTAGGGCCGTACTAGTCTTTTAAGTATACTGAGAAGGGCCGGTGCTAAAGTAGAAGCTGTCGTGGGACGCGCCGGCGCGGAGTCCCACAGTGGCCCGGAGGAACGGAGT CCGTGCTAGGGGGACCCAGTCCGGAGCCTGGGGACCGAGCTCGCATTGTTGGGAGACAACCCGCCTCTTCTTCCCAGAGGCGTCAATCCCAGGACGGTCGAGGCGTCGGGGCAACCACTGAGCGCTCT GCAGAGAGACCCGGTCGGGGAGAGGACTCGCAGTCTCAAACAGTCTGGGAGAGCCGATCGGAATCCGGCGGGATCACTCGGGGGCGGCGAGCCCCCGTCGCGCCTCGTGCGGCGGAGAGGCCAGGGGA GAAAGTCCTCCGAGGCAGCAGTCCATGCGCGGGTTGGGGACGCCTGCCCAGTGAATCCTCCTGGCCAGCCGGGCGCAGGAGAGCGACCCCGAGGCCGGCGGGAGGAGAGTGCTTCAAGGCCGGCGGCT GCGGAGGATGGGCGCCTAAGTGGCTCCGAGCGCTGCGCGGCAAGGGCAGGCGAGGCGAGCTTTGCTGAGGAGGTGCTAGGGGATCCTGAAGTGCATCCTGCCCCCGGGAAAATGGCCCGGCCTGGGCA GCGTTGGCTCAGCAAGTGGCTTGTGGCTATGGTCGTGCTGACGCTGTGCCGGCTTGCCACGCCGTTGGCCAAGAACCTGGAGCCCGTGTCCTGGAGCTCTCTTAACCCTAAGTTCCTAAGTGGGAAGG GCTTGGTGATCTACCCGAAGATTGGAGATAAGCTGGACATCATCTGCCCCCGAGCAGAAGCAGGACGGCCCTACGAGTACTACAAGCTGTACCTGGTGCGGCCGGAGCAGGCAGCTGCTTGCAGCACT GTGCTTGATCCCAATGTACTGGTCACTTGCAACAAGCCACAGCAGGAAATCCGCTTTACCATCAAGTTCCAGGAGTTCAGCCCCAACTACATGGGCCTGGAATTCAAAAAGTACCATGATTACTACAT TACATCAACATCCAATGGGAGCTTGGAAGGGCTGGAGAACCGAGAGGGAGGTGTGTGCCGTACACGCACTATGAAGATTGTTATGAAGGTTGGGCAAGATCCAAATGCCGTAACGCCTGAGCAGTTGA CTACCAGCCGGCCAAGCAAAGAGTCAGACAACACTGTCAAGACAGCCACACAGGCTCCTGGTCGGGGGTCCCAGGGGGACTCTGATGGCAAGCATGAGACTGTGAACCAGCAAGAGAAGAGTGGCCCA GGTGCAGGTGGTAGTGGCAGCGGGGACACCGACAGCTTCTTTAACTCCAAGGTAGCATTGTTCGCAGCTGTAGGTGCTGGCTGCGTCATCTTCCTGCTCATTATCATCTTTTTGACAGTCCTACTACT CAAGCTCCGCAAGCGACATCGCAAGCATACACAGCAGCGGGCGGCTGCCCTCTCGCTCAGTACCCTAGCCAGCCCCAAAGGGGGTAGTGGTACAGCGGGCACTGAGCCCAGCGACATCATCATCCCCT TACGGACTACAGAGAACAACTACTGCCCCCACTATGAGAAGGTGAGTGGGGACTACGGGCATCCTGTCTACATCGTCCAGGAGATGCCACCTCAGAGCCCGGCGAACATCTACTACAAGGTCTGAGGG CCCAGCATGGCCTCAGGCTCCACAGGACACATGGCCTGGATTGGCCTCTCTTTTCTCCCCCACACCCCTCCCCTTGCCAGCTGTGCCCACCTTTGTATTTAGTTTTGTAGTTTCTTGGCTTTTATAAT CCCCCTTTTTTCCTGCCCCTTGGGCTTCGGAGGGGGGTGCTTGTGCCCCCAATCCCCATGCTCTTGTGCCTTCCCCCTCTGGCCAGGCCTCTGGGCTCTGTGGGGGTGCCCTTTCTTGGAGGGCAGGG TTGGACACTGATGGACTGCAGGCAGGGAGATAGCCCCCTGGCCCTGCCCCCTCCTCATCCCTTCACCCATCCCCAGGACTGCTTGTCCACTATCATCACTGTTTTTAATGCTTTTGTGTTGATTTTTT TAGCTGTCAACTCATTTTCATCTGTTTTTTTTATTTTTGAGAAAAAAATGGGAAAATGTACAAGGCAGCCCCTCCCCAGGCTTTCTGAGCCTGGCCTGACCCAGTATGAGAGGGCCTGGGGCAGGATG TGGCCAGCCAGGAAACATAGGATGGCATTTCTTTTATAGACTCCTCAGTAGTTCAGGGGAGTGGGGGAGGGTAGGCCATGGCTATTTCTGCCTAGCAGGGAGAGGAGAGTGCCACCCTCCTTTTTGGA CCCCCATGATACAATGCTGTTCCTAGCAGTGGGGTAGTGTCTACCACCCTTCTACCAAAAAAAAATCCCTTCCTTGTGGGATTCTTGGGCATCTCCTGCCTCCTTCACTCTCACGGTAATTAATGTCT TAATTGGCTGTTGCCTGGGGAACAGGAGAGCTGCTGCAGGCAGATGACCTCATGGGGGGTGGAGGGAGGTGAGGTGCCCAGGTGGCTATTTGCCCTGCAGAGCTGGGAGTTTCCCCCCACCACCCTGT CTCTCTCCTTACCTTCGGCATCTTTGGCTCAAGGTGGAGATAGATGTAAGCGGTGTAAGGCCAGATGGCCTGCTCCTTCCCTGGGTTCTAGTACAAGTAAGCACACACACACCCCCACTCACTCAATA TGGCTCCCACTGTCCCCCACCCCGCCCATAGTTTTGAGCAGGGGCCTGGAAAGAGGAAGAGGCTGCTTGGGGCTGGGCCAGCCTGCAGTGCACTTTGACCCCAGCTCCTTGCCAGCACGGCTGCTAAC AGACTGCCACTCAACTGCGCCTTGCAGGCACTCCCAGGGCTGCCATGGAAGGAGCTGGGCCTTACACCACCCACCTCCACACTGCCTCCTGGCCAGCTGCCCACCCCAGTGCCAGGTGGGAGAGGGAG CAAAACAGCCAGCCCCTTCCAGGTGGCAGTCGGAAGGGATTTTTGTTTTTGATTCTGTTGCCATTTGTGTAAATACTAGTCTTTTTTGGAAGAAATAATGTAAAGATGTTTTGTATAAACTCTGAATT ATTTTCTTGTTGCTTTTTTCTTAGAAAAAAATGAGAACTAAAAAAAAATTAACCACATGGAAAAAAAAAAAAAAA
hide sequence
RefSeq Acc Id:
NP_058785 ⟸ NM_017089
- Peptide Label:
precursor
- UniProtKB:
P52796 (UniProtKB/Swiss-Prot), Q6P7B6 (UniProtKB/TrEMBL), F7FBR1 (UniProtKB/TrEMBL)
- Sequence:
MARPGQRWLSKWLVAMVVLTLCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNKPQQEIRFTIKFQEFSPNYMGLEFKK YHDYYITSTSNGSLEGLENREGGVCRTRTMKIVMKVGQDPNAVTPEQLTTSRPSKESDNTVKTATQAPGRGSQGDSDGKHETVNQQEKSGPGAGGSGSGDTDSFFNSKVALFAAVGAGCVIFLLIIIF LTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTAGTEPSDIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
hide sequence
Ensembl Acc Id:
ENSRNOP00000009635 ⟸ ENSRNOT00000009635
RGD ID: 13701859
Promoter ID: EPDNEW_R12383
Type: initiation region
Name: Efnb1_1
Description: ephrin B1
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 X 68,891,221 - 68,891,281 EPDNEW
BioCyc Gene
G2FUF-2152
BioCyc
Ensembl Genes
ENSRNOG00000006877
Ensembl, UniProtKB/TrEMBL
Ensembl Transcript
ENSRNOT00000009635.7
UniProtKB/TrEMBL
Gene3D-CATH
2.60.40.420
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE
IMAGE:5599058
IMAGE-MGC_LOAD
InterPro
Cupredoxin
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ephrin
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ephrin-B_Ecto
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ephrin_CS
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ephrin_RBD
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report
rno:25186
UniProtKB/TrEMBL
MGC_CLONE
MGC:72504
IMAGE-MGC_LOAD
NCBI Gene
25186
ENTREZGENE
PANTHER
EPHRIN-B1
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PTHR11304
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam
Ephrin
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen
Efnb1
PhenoGen
PRINTS
EPHRIN
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE
EPHRIN_RBD_1
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
EPHRIN_RBD_2
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx
ENSRNOG00000006877
RatGTEx
Superfamily-SCOP
SSF49503
UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt
EFNB1_RAT
UniProtKB/Swiss-Prot
F7FBR1
ENTREZGENE, UniProtKB/TrEMBL
P52796
ENTREZGENE
Q6P7B6
ENTREZGENE, UniProtKB/TrEMBL
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2002-06-10
Efnb1
Ephrin B1
Symbol and Name status set to approved
70586
APPROVED
Note Type
Note
Reference
gene_expression
expressed in granule and Purkinje neurons
727396