Adh1c (alcohol dehydrogenase 1C (class I), gamma polypeptide) - Rat Genome Database

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Gene: Adh1c (alcohol dehydrogenase 1C (class I), gamma polypeptide) Rattus norvegicus
Analyze
Symbol: Adh1c
Name: alcohol dehydrogenase 1C (class I), gamma polypeptide
RGD ID: 2044
Description: Enables all-trans-retinol dehydrogenase (NAD+) activity. Involved in several processes, including animal organ regeneration; response to ethanol; and response to progesterone. Predicted to be located in several cellular components, including ciliary basal body; mitochondrion; and nucleoplasm. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in alcohol dependence; late onset Parkinson's disease; and pancreatic cancer. Orthologous to human ADH1A (alcohol dehydrogenase 1A (class I), alpha polypeptide); ADH1B (alcohol dehydrogenase 1B (class I), beta polypeptide); and ADH1C (alcohol dehydrogenase 1C (class I), gamma polypeptide); INTERACTS WITH (+)-schisandrin B; 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Adh; Adh1; Adh1a; Alcohol dehydrogenase (class I), alpha polypeptide; alcohol dehydrogenase 1; alcohol dehydrogenase 1 (class I); alcohol dehydrogenase 1 (class I), gamma polypeptide; alcohol dehydrogenase 1, complex; alcohol dehydrogenase A subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Pig
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Adh1-ps1  
Is Marker For: Strains:   SS.MNS-(Adh1-D2Mit5)/Mco   SS.MNS-(D2Mit6-Adh1)/Ayd   SS.MNS-(D2Wox27-Adh1)/Ayd  
QTLs:   Bp239   Kidm36  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82229,470,703 - 229,482,291 (+)NCBIGRCr8
mRatBN7.22226,797,303 - 226,808,892 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2226,797,303 - 226,808,892 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2234,543,562 - 234,555,115 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02232,443,298 - 232,454,851 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02227,307,972 - 227,319,527 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02243,550,655 - 243,562,243 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2243,550,627 - 243,687,857 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02262,090,818 - 262,102,977 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42235,799,396 - 235,811,584 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12235,786,135 - 235,797,838 (+)NCBI
Celera2218,954,198 - 218,965,645 (+)NCBICelera
Cytogenetic Map2q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Adh1cRatalcohol dependence  ISOADH1C (Homo sapiens)405650603associated with other drug dependencies and DNA:SNPs:CDS: (rs904096)RGD 
Adh1cRatBinge Drinking  IEP 405100715mRNA:altered exxpression:liver (rat)RGD 
Adh1cRatpancreatic cancer  ISOADH1C (Homo sapiens)2325313DNA:polymorphism: :p.R272Q (human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Adh1cRatalcohol dependence  ISOADH1C (Homo sapiens)8554872ClinVar Annotator: match by term: Alcohol dependenceClinVarPMID:10090900 more ...
Adh1cRatlate onset Parkinson's disease  ISOADH1C (Homo sapiens)8554872ClinVar Annotator: match by term: Parkinson disease and late-onsetClinVarPMID:25741868
Adh1cRatParkinson's Disease, Mitochondrial  ISOADH1C (Homo sapiens)8554872ClinVar Annotator: match by term: Parkinson disease and mitochondrialClinVarPMID:15642852
Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Adh1cRatalcohol use disorder  ISOADH1C (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16404797
Adh1cRatExperimental Liver Cirrhosis  ISOAdh1 (Mus musculus)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Adh1cRatGenetic Predisposition to Disease  ISOADH1C (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16404797
Adh1cRatMouth Neoplasms  ISOADH1C (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15138216
Object Symbol
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Term
Qualifier
Evidence
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Reference
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Original Reference(s)
Adh1cRatalcohol dependence  ISOADH1C (Homo sapiens)7240710 OMIM 
Adh1cRatlate onset Parkinson's disease  ISOADH1C (Homo sapiens)7240710 OMIM 

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Object Symbol
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Original Reference(s)
Adh1cRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of ADH1 mRNA]CTDPMID:31150632
Adh1cRat(1->4)-beta-D-glucan multiple interactionsISOAdh1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of ADH1 mRNACTDPMID:36331819
Adh1cRat1,2-dimethylhydrazine decreases expressionISOAdh1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of ADH1 mRNACTDPMID:22206623
Adh1cRat1,2-dimethylhydrazine multiple interactionsISOAdh1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of ADH1 mRNACTDPMID:22206623
Adh1cRat1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine decreases expressionEXP 6480464chlorcyclizine results in decreased expression of ADH1 mRNACTDPMID:21058326
Adh1cRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of ADH1 mRNACTDPMID:25380136
Adh1cRat17alpha-ethynylestradiol increases expressionISOAdh1 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of ADH1 mRNACTDPMID:17942748
Adh1cRat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of ADH1 mRNACTDPMID:15953391 and PMID:17108234
Adh1cRat17alpha-ethynylestradiol multiple interactionsISOAdh1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ADH1 mRNACTDPMID:17942748
Adh1cRat17alpha-ethynylestradiol affects expressionISOAdh1 (Mus musculus)6480464Ethinyl Estradiol affects the expression of ADH1 mRNACTDPMID:17555576
Adh1cRat17beta-estradiol decreases expressionISOADH1C (Homo sapiens)6480464Estradiol results in decreased expression of ADH1C mRNACTDPMID:20106945
Adh1cRat17beta-estradiol decreases expressionISOAdh1 (Mus musculus)6480464Estradiol results in decreased expression of ADH1 mRNACTDPMID:39298647
Adh1cRat17beta-estradiol increases expressionISOAdh1 (Mus musculus)6480464Estradiol results in increased expression of ADH1 mRNACTDPMID:14664709
Adh1cRat1H-pyrazole multiple interactionsISOAdh1 (Mus musculus)6480464pyrazole inhibits the reaction [ADH1 protein results in increased metabolism of Ethanol]CTDPMID:7646056
Adh1cRat1H-pyrazole decreases activityEXP 6480464pyrazole results in decreased activity of ADH1 proteinCTDPMID:15551062
Adh1cRat1H-pyrazole decreases activityISOAdh1 (Mus musculus)6480464pyrazole results in decreased activity of ADH1 proteinCTDPMID:16289176
Adh1cRat2,3,7,8-tetrabromodibenzodioxine decreases expressionISOAdh1 (Mus musculus)64804642 more ...CTDPMID:27604104
Adh1cRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOAdh1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ADH1 mRNACTDPMID:17942748
Adh1cRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of ADH1 mRNACTDPMID:34747641
Adh1cRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOAdh1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of ADH1 mRNACTDPMID:28213091

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Biological Process
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Original Reference(s)
Adh1cRatanimal organ regeneration  IEP 2315739 RGD 
Adh1cRatbehavioral response to ethanol acts_upstream_of_or_withinISOAdh1 (Mus musculus)1624291MGI:2180100 PMID:10358022RGDPMID:10358022
Adh1cRatbehavioral response to ethanol acts_upstream_of_or_withinIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
Adh1cRatethanol catabolic process acts_upstream_of_or_withinIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
Adh1cRatethanol catabolic process acts_upstream_of_or_withinISOAdh1 (Mus musculus)1624291MGI:2180100 PMID:10358022 and PMID:518534RGDPMID:10358022 and PMID:518534
Adh1cRatlipid metabolic process  IDA 1642948 RGD 
Adh1cRatresponse to ethanol  IEP 405100715 RGD 
Adh1cRatresponse to progesterone  IEP 2315738 RGD 
Adh1cRatresponse to retinoic acid acts_upstream_of_or_withinISOAdh1 (Mus musculus)1624291 PMID:7748347RGDPMID:7748347
Adh1cRatresponse to retinoic acid acts_upstream_of_or_withinIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
Adh1cRatresponse to steroid hormone acts_upstream_of_or_withinISOAdh1 (Mus musculus)1624291 PMID:8119157RGDPMID:8119157
Adh1cRatresponse to steroid hormone acts_upstream_of_or_withinIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
Adh1cRatresponse to testosterone acts_upstream_of_or_withinISOAdh1 (Mus musculus)1624291 PMID:8973327RGDPMID:8973327
Adh1cRatresponse to testosterone acts_upstream_of_or_withinIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
Adh1cRatretinoic acid metabolic process acts_upstream_of_or_withinIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
Adh1cRatretinoic acid metabolic process acts_upstream_of_or_withinISOAdh1 (Mus musculus)1624291MGI:2180099 more ...RGDPMID:10358022 more ...
Adh1cRatretinoic acid metabolic process involved_inIBAMGI:87921 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Adh1cRatretinoid metabolic process acts_upstream_of_or_withinISOAdh1 (Mus musculus)1624291MGI:2180100 PMID:12027900RGDPMID:12027900
Adh1cRatretinoid metabolic process acts_upstream_of_or_withinIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
Adh1cRatretinol metabolic process acts_upstream_of_or_withinIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
Adh1cRatciliary basal body located_inISOADH1C (Homo sapiens)1624291 RGDGO_REF:0000052
Adh1cRatcilium located_inISOADH1C (Homo sapiens)1624291 RGDGO_REF:0000052
Adh1cRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Adh1cRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Adh1cRatcytosol located_inISOADH1C (Homo sapiens)1624291 RGDGO_REF:0000052
Adh1cRatcytosol is_active_inIBAPANTHER:PTN000191653 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Adh1cRatmitochondrion located_inIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
Adh1cRatmitochondrion located_inISOAdh1 (Mus musculus)1624291 PMID:3996732RGDPMID:3996732
Adh1cRatnucleoplasm located_inISOADH1C (Homo sapiens)1624291 RGDGO_REF:0000052
Adh1cRatplasma membrane located_inISOADH1C (Homo sapiens)1624291 RGDGO_REF:0000052
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Molecular Function
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Original Reference(s)
Adh1cRatalcohol dehydrogenase (NAD+) activity  IDA 1642949 RGD 
Adh1cRatalcohol dehydrogenase (NAD+) activity  TAS 631178 RGD 
Adh1cRatalcohol dehydrogenase (NAD+) activity enablesIEARHEA:10736 and RHEA:107401600115GO_REF:0000116RHEAGO_REF:0000116
Adh1cRatalcohol dehydrogenase (NAD+) activity enablesIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
Adh1cRatalcohol dehydrogenase (NAD+) activity enablesIEAEC:1.1.1.11600115GO_REF:0000003UniProtGO_REF:0000003
Adh1cRatalcohol dehydrogenase (NAD+) activity enablesISOAdh1 (Mus musculus)1624291 PMID:3996732 more ...RGDPMID:3996732 more ...
Adh1cRatalcohol dehydrogenase (NAD+) activity enablesISOADH1C (Homo sapiens)1624291 PMID:6391957RGDPMID:6391957
Adh1cRatall-trans-retinol dehydrogenase (NAD+) activity  IDA 2315740 RGD 
Adh1cRatall-trans-retinol dehydrogenase (NAD+) activity enablesIBAMGI:87921 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Adh1cRatall-trans-retinol dehydrogenase (NAD+) activity enablesIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
Adh1cRatall-trans-retinol dehydrogenase (NAD+) activity enablesISOAdh1 (Mus musculus)1624291MGI:97876 PMID:15193143RGDPMID:15193143
Adh1cRatidentical protein binding enablesIEAUniProtKB:P00329 and ensembl:ENSMUSP000000042321600115GO_REF:0000107EnsemblGO_REF:0000107
Adh1cRatidentical protein binding enablesISOAdh1 (Mus musculus)1624291PR:P00329 PMID:3996732RGDPMID:3996732
Adh1cRatmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Adh1cRatoxidoreductase activity enablesIEAUniProtKB-KW:KW-05601600115GO_REF:0000043UniProtGO_REF:0000043
Adh1cRatoxidoreductase activity enablesIEAInterPro:IPR002328 and InterPro:IPR0208431600115GO_REF:0000002InterProGO_REF:0000002
Adh1cRatoxidoreductase activity enablesIEAInterPro:IPR0023281600115GO_REF:0000002InterProGO_REF:0000002
Adh1cRatprotein binding enablesISOADH1C (Homo sapiens)1624291UniProtKB:P00325 more ...RGDPMID:28514442 and PMID:33961781
Adh1cRatzinc ion binding enablesIEAInterPro:IPR0023281600115GO_REF:0000002InterProGO_REF:0000002
Adh1cRatzinc ion binding enablesIBAPANTHER:PTN000191653 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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BioCyc Pathways


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Reference Title
Reference Citation
1. An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count. Chen G, etal., Addict Biol. 2017 Nov;22(6):1475-1485. doi: 10.1111/adb.12402. Epub 2016 May 5.
2. Distribution of alcohol dehydrogenase and the low Km form of aldehyde dehydrogenase in isolated perivenous and periportal hepatocytes in rats. Chen L, etal., Alcohol Clin Exp Res. 1992 Feb;16(1):23-9.
3. Structure and expression of the rat class I alcohol dehydrogenase gene. Crabb DW, etal., Genomics 1989 Nov;5(4):906-14.
4. High-level expression of rat class I alcohol dehydrogenase is sufficient for ethanol-induced fat accumulation in transduced HeLa cells. Galli A, etal., Hepatology. 1999 Apr;29(4):1164-70.
5. Distribution of class I, III and IV alcohol dehydrogenase mRNAs in the adult rat, mouse and human brain. Galter D, etal., Eur J Biochem 2003 Mar;270(6):1316-26.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. Methanol metabolism and embryotoxicity in rat and mouse conceptuses: comparisons of alcohol dehydrogenase (ADH1), formaldehyde dehydrogenase (ADH3), and catalase. Harris C, etal., Reprod Toxicol. 2003 May-Jun;17(3):349-57.
9. Ocular alcohol dehydrogenase in the rat: regional distribution and kinetics of the ADH-1 isoenzyme with retinol and retinal. Julia P, etal., Exp Eye Res. 1986 Apr;42(4):305-14.
10. Impact of alcohol consumption with polymorphisms in alcohol-metabolizing enzymes on pancreatic cancer risk in Japanese. Kanda J, etal., Cancer Sci. 2008 Dec 4.
11. Involvement of alcohol and aldehyde dehydrogenase activities on hepatic retinoid metabolism and its possible participation in the progression of rat liver regeneration. Lopez-Valencia V, etal., Biochem Pharmacol. 2007 Feb 15;73(4):586-96. Epub 2006 Oct 26.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Interactions of alcohol dehydrogenase to p-hydroxyacetophenone-sepharose and p-acetamidophenol-sepharose. Negoro M and Wakabayashi I, Alcohol Clin Exp Res. 2005 Dec;29(12 Suppl):304S-8S.
14. Evidence for the expression of alcohol dehydrogenase class I gene in rat uterus and its up-regulation by progesterone. Ohno T, etal., Endocr J. 2008 Mar;55(1):83-90. Epub 2008 Jan 24.
15. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
16. GOA pipeline RGD automated data pipeline
17. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. Ethanol concentration-dependent alterations in gene expression during acute binge drinking in the HIV-1 transgenic rat. Sarkar S and Chang SL, Alcohol Clin Exp Res. 2013 Jul;37(7):1082-90. doi: 10.1111/acer.12077. Epub 2013 Feb 15.
20. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
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PMID:9982   PMID:518534   PMID:2881847   PMID:3996732   PMID:4673366   PMID:6370228   PMID:6391957   PMID:6816803   PMID:7026729   PMID:7748347   PMID:8119157   PMID:8344317  
PMID:8973327   PMID:9002638   PMID:10358022   PMID:12027900   PMID:12213809   PMID:12787032   PMID:12851412   PMID:15123720   PMID:15193143   PMID:15489334   PMID:16109828   PMID:16421892  
PMID:17257171   PMID:17488809   PMID:22214999  



Adh1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82229,470,703 - 229,482,291 (+)NCBIGRCr8
mRatBN7.22226,797,303 - 226,808,892 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2226,797,303 - 226,808,892 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2234,543,562 - 234,555,115 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02232,443,298 - 232,454,851 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02227,307,972 - 227,319,527 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02243,550,655 - 243,562,243 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2243,550,627 - 243,687,857 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02262,090,818 - 262,102,977 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42235,799,396 - 235,811,584 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12235,786,135 - 235,797,838 (+)NCBI
Celera2218,954,198 - 218,965,645 (+)NCBICelera
Cytogenetic Map2q44NCBI
ADH1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38499,336,497 - 99,352,746 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl499,336,497 - 99,352,746 (-)EnsemblGRCh38hg38GRCh38
GRCh374100,257,654 - 100,273,903 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364100,476,672 - 100,492,940 (-)NCBINCBI36Build 36hg18NCBI36
Build 344100,614,828 - 100,631,081NCBI
Celera497,554,804 - 97,571,075 (-)NCBICelera
Cytogenetic Map4q23NCBI
HuRef495,995,418 - 96,011,667 (-)NCBIHuRef
CHM1_14100,234,034 - 100,250,392 (-)NCBICHM1_1
T2T-CHM13v2.04102,651,250 - 102,667,501 (-)NCBIT2T-CHM13v2.0
Adh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393137,983,346 - 137,996,459 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3137,966,752 - 137,996,459 (+)EnsemblGRCm39 Ensembl
GRCm383138,277,585 - 138,290,698 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3138,260,991 - 138,290,698 (+)EnsemblGRCm38mm10GRCm38
MGSCv373137,940,609 - 137,953,655 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363138,215,032 - 138,228,078 (+)NCBIMGSCv36mm8
Celera3144,684,702 - 144,697,775 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map364.16NCBI
Adh1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554968,136,279 - 8,149,496 (+)NCBIChiLan1.0ChiLan1.0
LOC100970753
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2397,415,305 - 97,432,225 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1497,698,981 - 97,715,496 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0491,756,817 - 91,773,056 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14102,418,515 - 102,435,079 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4102,388,575 - 102,435,079 (-)Ensemblpanpan1.1panPan2
LOC100512795
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8121,020,969 - 121,041,506 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18121,020,683 - 121,041,735 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28130,164,997 - 130,185,238 (+)NCBISscrofa10.2Sscrofa10.2susScr3

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Variants in Adh1c
111 total Variants

1 to 10 of 34 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2217139753236660713Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat

1 to 10 of 34 rows
D2Mco31  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q44UniSTS
RH127331  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22226,808,361 - 226,808,574 (+)MAPPERmRatBN7.2
Rnor_6.02243,561,713 - 243,561,925NCBIRnor6.0
Rnor_5.02262,102,447 - 262,102,659UniSTSRnor5.0
RGSC_v3.42235,811,054 - 235,811,266UniSTSRGSC3.4
Celera2218,965,115 - 218,965,327UniSTS
Cytogenetic Map2q44UniSTS
RH94448  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22226,804,370 - 226,804,497 (+)MAPPERmRatBN7.2
mRatBN7.22226,925,460 - 226,925,587 (+)MAPPERmRatBN7.2
Rnor_6.02243,678,784 - 243,678,910NCBIRnor6.0
Rnor_6.02243,557,722 - 243,557,848NCBIRnor6.0
Rnor_5.02262,215,552 - 262,215,678UniSTSRnor5.0
Rnor_5.02262,098,456 - 262,098,582UniSTSRnor5.0
RGSC_v3.42235,806,700 - 235,806,826UniSTSRGSC3.4
RGSC_v3.42235,929,773 - 235,929,899UniSTSRGSC3.4
Celera2219,082,133 - 219,082,259UniSTS
Celera2218,961,124 - 218,961,250UniSTS
RH 3.4 Map21605.6UniSTS
Cytogenetic Map2q44UniSTS
AI233003  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22226,808,694 - 226,808,846 (+)MAPPERmRatBN7.2
Rnor_6.02243,562,046 - 243,562,197NCBIRnor6.0
Rnor_5.02262,102,780 - 262,102,931UniSTSRnor5.0
RGSC_v3.42235,811,387 - 235,811,538UniSTSRGSC3.4
Celera2218,965,448 - 218,965,599UniSTS
RH 3.4 Map21595.4UniSTS
Cytogenetic Map2q44UniSTS


The following Strains have been annotated to Adh1c




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
3 11 29 70 57 60 41 19 41 146 59 62 35 39 19



Ensembl Acc Id: ENSRNOT00000036993   ⟹   ENSRNOP00000030638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2243,656,579 - 243,687,857 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083682   ⟹   ENSRNOP00000072955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2226,799,121 - 226,807,597 (+)Ensembl
Rnor_6.0 Ensembl2243,550,639 - 243,561,757 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085067   ⟹   ENSRNOP00000069797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2226,797,303 - 226,808,892 (+)Ensembl
Rnor_6.0 Ensembl2243,550,627 - 243,687,383 (+)Ensembl
RefSeq Acc Id: NM_019286   ⟹   NP_062159
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,470,703 - 229,482,291 (+)NCBI
mRatBN7.22226,797,303 - 226,808,892 (+)NCBI
Rnor_6.02243,550,655 - 243,562,243 (+)NCBI
Rnor_5.02262,090,818 - 262,102,977 (+)NCBI
RGSC_v3.42235,799,396 - 235,811,584 (+)RGD
Celera2218,954,198 - 218,965,645 (+)NCBI
Sequence:
1 to 10 of 10 rows
Protein RefSeqs NP_062159 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40681 (Get FASTA)   NCBI Sequence Viewer  
  AAH62403 (Get FASTA)   NCBI Sequence Viewer  
  AAM34269 (Get FASTA)   NCBI Sequence Viewer  
  CAA51307 (Get FASTA)   NCBI Sequence Viewer  
  EDL82313 (Get FASTA)   NCBI Sequence Viewer  
  EDL82314 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069797
  ENSRNOP00000069797.2
GenBank Protein P06757 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: NP_062159   ⟸   NM_019286
- UniProtKB: P06757 (UniProtKB/Swiss-Prot),   Q8K571 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069797   ⟸   ENSRNOT00000085067
Ensembl Acc Id: ENSRNOP00000030638   ⟸   ENSRNOT00000036993
Ensembl Acc Id: ENSRNOP00000072955   ⟸   ENSRNOT00000083682
Name Modeler Protein Id AA Range Protein Structure
AF-P06757-F1-model_v2 AlphaFold P06757 1-376 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13691785
Promoter ID:EPDNEW_R2310
Type:multiple initiation site
Name:Adh6_1
Description:alcohol dehydrogenase 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02243,550,657 - 243,550,717EPDNEW


1 to 33 of 33 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-51076 BioCyc
BioCyc Pathway PWY66-21 [ethanol degradation II] BioCyc
BioCyc Pathway Image PWY66-21 BioCyc
Ensembl Genes ENSRNOG00000012436 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000085067 ENTREZGENE
  ENSRNOT00000085067.2 UniProtKB/Swiss-Prot
Gene3D-CATH Medium-chain alcohol dehydrogenases, catalytic domain UniProtKB/Swiss-Prot
  NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5621394 IMAGE-MGC_LOAD
InterPro ADH_C UniProtKB/Swiss-Prot
  ADH_N UniProtKB/Swiss-Prot
  ADH_Zn_CS UniProtKB/Swiss-Prot
  GroES-like_sf UniProtKB/Swiss-Prot
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot
  PKS_ER UniProtKB/Swiss-Prot
KEGG Report rno:24172 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72255 IMAGE-MGC_LOAD
NCBI Gene 24172 ENTREZGENE
PANTHER ALCOHOL DEHYDROGENASE UniProtKB/Swiss-Prot
  ALCOHOL DEHYDROGENASE 1A UniProtKB/Swiss-Prot
Pfam ADH_N UniProtKB/Swiss-Prot
  ADH_zinc_N UniProtKB/Swiss-Prot
PharmGKB ADH1C RGD
PhenoGen Adh1c PhenoGen
PROSITE ADH_ZINC UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012436 RatGTEx
SMART PKS_ER UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50129 UniProtKB/Swiss-Prot
  SSF51735 UniProtKB/Swiss-Prot
UniProt A0A0G2JW98_RAT UniProtKB/TrEMBL
  A0A8L2R817_RAT UniProtKB/TrEMBL
  ADH1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q8K571 ENTREZGENE, UniProtKB/TrEMBL
1 to 33 of 33 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-19 Adh1c  alcohol dehydrogenase 1C (class I), gamma polypeptide  Adh1c  alcohol dehydrogenase 1 (class I), gamma polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-06-09 Adh1c  alcohol dehydrogenase 1 (class I), gamma polypeptide  Adh1  alcohol dehydrogenase 1C (class I), gamma polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-04-08 Adh1  alcohol dehydrogenase 1C (class I), gamma polypeptide  Adh1  alcohol dehydrogenase 1 (class I)  Name changed 629549 APPROVED
2013-03-07 Adh1  alcohol dehydrogenase 1 (class I)  Adh1c  alcohol dehydrogenase 1C (class I), gamma polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-01 Adh1c  alcohol dehydrogenase 1C (class I), gamma polypeptide  Adh1  alcohol dehydrogenase 1 (class I)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-28 Adh1c  alcohol dehydrogenase 1C (class I), gamma polypeptide  Adh1  alcohol dehydrogenase 1 (class I)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-28 Adh1  alcohol dehydrogenase 1 (class I)  Adh1c  alcohol dehydrogenase 1C (class I), gamma polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Adh1  alcohol dehydrogenase 1 (class I)    alcohol dehydrogenase 1  Name updated 1299863 APPROVED
2002-11-06 Adh1  alcohol dehydrogenase 1    Alcohol dehydrogenase (class I), alpha polypeptide  Name updated 625702 APPROVED
2002-06-10 Adh1  Alcohol dehydrogenase (class I), alpha polypeptide      Symbol and Name status set to approved 70586 APPROVED