Fubp1 (far upstream element binding protein 1) - Rat Genome Database

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Gene: Fubp1 (far upstream element binding protein 1) Rattus norvegicus
Analyze
Symbol: Fubp1
Name: far upstream element binding protein 1
RGD ID: 1591892
Description: Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and mRNA binding activity. Involved in cellular response to lipopolysaccharide; positive regulation of Schwann cell migration; and response to nutrient levels. Predicted to be active in cytoplasm; nucleus; and synapse. Biomarker of sciatic neuropathy and traumatic brain injury. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human FUBP1 (far upstream element binding protein 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: far upstream element (FUSE) binding protein 1; far upstream element-binding protein 1; FBP; FUSE-binding protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,819,529 - 243,846,544 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2243,819,218 - 243,846,428 (+)EnsemblGRCr8
mRatBN7.22241,159,481 - 241,186,591 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,159,512 - 241,186,602 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2248,973,302 - 248,996,209 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,860,320 - 246,883,226 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,759,691 - 241,782,653 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02257,425,676 - 257,452,745 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,425,679 - 257,449,568 (+)Ensemblrn6Rnor6.0
Rnor_5.02276,102,238 - 276,129,492 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42250,749,095 - 250,777,521 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2233,094,240 - 233,117,161 (+)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
amphotericin B  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper(II) chloride  (ISO)
cordycepin  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dimethyl sulfoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
hexadecanoic acid  (ISO)
hyaluronic acid  (EXP)
hydrogen peroxide  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxychlor  (EXP)
miconazole  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
nitroprusside  (EXP)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
quinoline  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium dichromate  (EXP)
succimer  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
tamoxifen  (ISO)
tanespimycin  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
synapse  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Upregulation of far upstream element-binding protein 1 (FUBP1) promotes tumor proliferation and unfavorable prognosis in tongue squamous cell carcinoma. Chen Y, etal., Int J Biol Markers. 2020 Jun;35(2):56-65. doi: 10.1177/1724600820912252. Epub 2020 Apr 27.
2. FUSE Binding Protein 1 Facilitates Persistent Hepatitis C Virus Replication in Hepatoma Cells by Regulating Tumor Suppressor p53. Dixit U, etal., J Virol. 2015 Aug;89(15):7905-21. doi: 10.1128/JVI.00729-15. Epub 2015 May 20.
3. Far upstream element-binding protein 1 facilitates hepatocellular carcinoma invasion and metastasis. Fu PY, etal., Carcinogenesis. 2020 Jul 14;41(7):950-960. doi: 10.1093/carcin/bgz171.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Fasting for 3 days during the suckling-weaning transient period in male rats induces metabolic abnormalities in the liver and is associated with impaired glucose tolerance in adulthood. Ikeda M, etal., Eur J Nutr. 2016 Apr;55(3):1059-67. doi: 10.1007/s00394-015-0919-9. Epub 2015 May 6.
6. Far upstream element-binding protein 1(FUBP1) expression differs between human colorectal cancer and non-cancerous tissue. Jia MY and Wang YJ, Neoplasma. 2014;61(5):533-40. doi: 10.4149/neo_2014_065.
7. Multiple Functions of Fubp1 in Cell Cycle Progression and Cell Survival. Kang M, etal., Cells. 2020 May 28;9(6). pii: cells9061347. doi: 10.3390/cells9061347.
8. Far upstream element-binding protein 1 is a prognostic biomarker and promotes nasopharyngeal carcinoma progression. Liu ZH, etal., Cell Death Dis. 2015 Oct 15;6:e1920. doi: 10.1038/cddis.2015.258.
9. Overexpression of the far upstream element binding protein 1 in hepatocellular carcinoma is required for tumor growth. Rabenhorst U, etal., Hepatology. 2009 Oct;50(4):1121-9. doi: 10.1002/hep.23098.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. MiR-16 mediates trastuzumab and lapatinib response in ErbB-2-positive breast and gastric cancer via its novel targets CCNJ and FUBP1. Venturutti L, etal., Oncogene. 2016 Dec 1;35(48):6189-6202. doi: 10.1038/onc.2016.151. Epub 2016 May 9.
14. FBP1 promotes ovarian cancer development through the acceleration of cell cycle transition and metastasis. Xiong X, etal., Oncol Lett. 2018 Aug;16(2):1682-1688. doi: 10.3892/ol.2018.8872. Epub 2018 Jun 1.
15. Far upstream element-binding protein 1 (FUBP1) is a potential c-Myc regulator in esophageal squamous cell carcinoma (ESCC) and its expression promotes ESCC progression. Yang L, etal., Tumour Biol. 2016 Mar;37(3):4115-26. doi: 10.1007/s13277-015-4263-8. Epub 2015 Oct 21.
16. FBP1 and p27kip1 expression after sciatic nerve injury: implications for Schwann cells proliferation and differentiation. Yao L, etal., J Cell Biochem. 2014 Jan;115(1):130-40. doi: 10.1002/jcb.24640.
17. Far upstream element-binding protein 1 (FUBP1) is overexpressed in human gastric cancer tissue compared to non-cancerous tissue. Zhang F, etal., Onkologie. 2013;36(11):650-5. doi: 10.1159/000355659. Epub 2013 Oct 14.
18. Knockdown of FUSE binding protein 1 enhances the sensitivity of epithelial ovarian cancer cells to carboplatin. Zhang J, etal., Oncol Lett. 2017 Nov;14(5):5819-5824. doi: 10.3892/ol.2017.6978. Epub 2017 Sep 15.
19. MiR-16-1 Targeted Silences Far Upstream Element Binding Protein 1 to Advance the Chemosensitivity to Adriamycin in Gastric Cancer. Zhao D, etal., Pathol Oncol Res. 2018 Jul;24(3):483-488. doi: 10.1007/s12253-017-0263-x. Epub 2017 Jun 30.
20. The expression of FBP1 after traumatic brain injury and its role in astrocyte proliferation. Zhao W, etal., J Mol Neurosci. 2013 Nov;51(3):687-94. doi: 10.1007/s12031-013-0049-x.
Additional References at PubMed
PMID:12477932   PMID:16452087   PMID:18836447   PMID:19087307   PMID:22658674   PMID:22681889   PMID:26095368   PMID:28131823  


Genomics

Comparative Map Data
Fubp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,819,529 - 243,846,544 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2243,819,218 - 243,846,428 (+)EnsemblGRCr8
mRatBN7.22241,159,481 - 241,186,591 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,159,512 - 241,186,602 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2248,973,302 - 248,996,209 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,860,320 - 246,883,226 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,759,691 - 241,782,653 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02257,425,676 - 257,452,745 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,425,679 - 257,449,568 (+)Ensemblrn6Rnor6.0
Rnor_5.02276,102,238 - 276,129,492 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42250,749,095 - 250,777,521 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2233,094,240 - 233,117,161 (+)NCBICelera
Cytogenetic Map2q45NCBI
FUBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,944,055 - 77,979,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,944,055 - 77,979,527 (-)Ensemblhg38GRCh38
GRCh37178,409,740 - 78,444,756 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,186,179 - 78,217,365 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34178,126,110 - 78,156,735NCBI
Celera176,652,669 - 76,683,855 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef176,545,210 - 76,576,401 (-)NCBIHuRef
CHM1_1178,529,931 - 78,561,136 (-)NCBICHM1_1
T2T-CHM13v2.0177,782,851 - 77,818,345 (-)NCBIT2T-CHM13v2.0
Fubp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,916,059 - 151,942,467 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3151,916,059 - 151,942,463 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm383152,210,422 - 152,236,830 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3152,210,422 - 152,236,826 (+)Ensemblmm10GRCm38
MGSCv373151,873,422 - 151,899,794 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363152,147,907 - 152,174,212 (+)NCBIMGSCv36mm8
Celera3158,688,293 - 158,714,689 (+)NCBICelera
Cytogenetic Map3H3NCBI
cM Map377.05NCBI
Fubp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542315,245,610 - 15,278,628 (+)Ensembl
ChiLan1.0NW_00495542315,245,645 - 15,278,628 (+)NCBIChiLan1.0ChiLan1.0
FUBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21148,909,884 - 148,945,725 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,072,401 - 148,108,326 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,162,675 - 77,198,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,244,892 - 79,280,448 (-)NCBIPanPan1.1PanPan1.1panPan2
FUBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1668,923,215 - 68,963,766 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha671,580,919 - 71,621,261 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0669,508,282 - 69,548,642 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl669,508,277 - 69,548,630 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1669,015,218 - 69,054,818 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0668,959,769 - 69,000,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0669,446,187 - 69,486,514 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fubp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,218,777 - 89,250,519 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365714,732,581 - 4,760,942 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365714,729,135 - 4,760,943 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FUBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6135,281,521 - 135,318,714 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16135,281,474 - 135,319,055 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26125,463,226 - 125,500,521 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FUBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12055,194,681 - 55,233,666 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2055,194,743 - 55,230,277 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603362,279,926 - 62,320,345 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fubp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474219,279,544 - 19,313,139 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fubp1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v139,376,649 - 9,402,290 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fubp1
206 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:43
Interacting mature miRNAs:56
Transcripts:ENSRNOT00000066199
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat

Markers in Region
D2Rat106  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82243,840,177 - 243,840,411 (+)Marker Load Pipeline
mRatBN7.22241,180,224 - 241,180,458 (+)MAPPERmRatBN7.2
Rnor_6.02257,446,379 - 257,446,612NCBIRnor6.0
Rnor_5.02276,123,126 - 276,123,359UniSTSRnor5.0
RGSC_v3.42250,755,328 - 250,755,690RGDRGSC3.4
RGSC_v3.42250,755,359 - 250,755,592UniSTSRGSC3.4
Celera2233,114,890 - 233,115,123UniSTS
RGSC_v3.12250,769,966 - 250,770,199RGD
RH 3.4 Map21650.32RGD
RH 3.4 Map21650.32UniSTS
RH 2.0 Map21224.5RGD
SHRSP x BN Map2110.2099RGD
FHH x ACI Map2112.8599RGD
Cytogenetic Map2q45UniSTS
RH130397  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22226,377,844 - 226,378,048 (+)MAPPERmRatBN7.2
mRatBN7.22241,186,236 - 241,186,430 (+)MAPPERmRatBN7.2
Rnor_6.02257,452,391 - 257,452,584NCBIRnor6.0
Rnor_6.02243,127,299 - 243,127,502NCBIRnor6.0
Rnor_5.02276,129,138 - 276,129,331UniSTSRnor5.0
Rnor_5.02261,675,035 - 261,675,238UniSTSRnor5.0
RGSC_v3.42235,375,102 - 235,375,305UniSTSRGSC3.4
RGSC_v3.42250,760,862 - 250,761,055UniSTSRGSC3.4
Celera2233,120,904 - 233,121,097UniSTS
Celera2218,544,327 - 218,544,530UniSTS
RH 3.4 Map21607.5UniSTS
Cytogenetic Map2q44UniSTS
Cytogenetic Map2q45UniSTS
AA799423  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,186,902 - 241,186,998 (+)MAPPERmRatBN7.2
Rnor_6.02257,453,057 - 257,453,152NCBIRnor6.0
Rnor_5.02276,129,804 - 276,129,899UniSTSRnor5.0
RGSC_v3.42250,761,528 - 250,761,623UniSTSRGSC3.4
Celera2233,121,570 - 233,121,665UniSTS
RH 3.4 Map21650.31UniSTS
Cytogenetic Map2q45UniSTS
A62227834FB73  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,184,233 - 241,185,481 (+)MAPPERmRatBN7.2
mRatBN7.22241,184,233 - 241,185,515 (+)MAPPERmRatBN7.2
Rnor_6.02257,450,388 - 257,451,669NCBIRnor6.0
Rnor_6.02257,450,388 - 257,451,635NCBIRnor6.0
Rnor_5.02276,127,135 - 276,128,416UniSTSRnor5.0
Rnor_5.02276,127,135 - 276,128,382UniSTSRnor5.0
RGSC_v3.42250,758,861 - 250,760,106UniSTSRGSC3.4
RGSC_v3.42250,758,861 - 250,760,140UniSTSRGSC3.4
Celera2233,118,899 - 233,120,182UniSTS
Celera2233,118,899 - 233,120,146UniSTS
Cytogenetic Map2q45UniSTS
UniSTS:234848  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,183,678 - 241,183,917 (+)MAPPERmRatBN7.2
Rnor_6.02257,449,833 - 257,450,071NCBIRnor6.0
Rnor_5.02276,126,580 - 276,126,818UniSTSRnor5.0
RGSC_v3.42250,758,306 - 250,758,544UniSTSRGSC3.4
Celera2233,118,344 - 233,118,582UniSTS
Cytogenetic Map2q45UniSTS
FUBP1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22241,182,320 - 241,182,476 (+)MAPPERmRatBN7.2
Rnor_6.02257,448,475 - 257,448,630NCBIRnor6.0
Rnor_5.02276,125,222 - 276,125,377UniSTSRnor5.0
Celera2233,116,986 - 233,117,141UniSTS
Cytogenetic Map2q45UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC107942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000066199   ⟹   ENSRNOP00000061544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2243,819,218 - 243,846,359 (+)Ensembl
mRatBN7.2 Ensembl2241,159,528 - 241,182,495 (+)Ensembl
Rnor_6.0 Ensembl2257,425,679 - 257,449,568 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094623   ⟹   ENSRNOP00000077531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2243,819,218 - 243,846,428 (+)Ensembl
mRatBN7.2 Ensembl2241,159,512 - 241,186,602 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110491   ⟹   ENSRNOP00000095243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2243,819,934 - 243,842,449 (+)Ensembl
mRatBN7.2 Ensembl2241,159,512 - 241,182,511 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000132758   ⟹   ENSRNOP00000103007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2243,819,218 - 243,842,697 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000135698   ⟹   ENSRNOP00000111951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2243,819,475 - 243,844,996 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000157036   ⟹   ENSRNOP00000099811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2243,819,496 - 243,843,266 (+)Ensembl
RefSeq Acc Id: NM_001037653   ⟹   NP_001032742
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,529 - 243,842,449 (+)NCBI
mRatBN7.22241,159,576 - 241,182,496 (+)NCBI
Rnor_6.02257,425,729 - 257,448,650 (+)NCBI
Rnor_5.02276,102,238 - 276,129,492 (+)NCBI
RGSC_v3.42250,749,095 - 250,777,521 (+)RGD
Celera2233,094,240 - 233,117,161 (+)RGD
Sequence:
RefSeq Acc Id: XM_006233507   ⟹   XP_006233569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,691 - 257,452,745 (+)NCBI
Rnor_5.02276,102,238 - 276,129,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233511   ⟹   XP_006233573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,692 - 257,452,745 (+)NCBI
Rnor_5.02276,102,238 - 276,129,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233512   ⟹   XP_006233574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,692 - 257,452,745 (+)NCBI
Rnor_5.02276,102,238 - 276,129,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233513   ⟹   XP_006233575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,692 - 257,452,745 (+)NCBI
Rnor_5.02276,102,238 - 276,129,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761555   ⟹   XP_008759777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,692 - 257,452,745 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761556   ⟹   XP_008759778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Rnor_6.02257,425,692 - 257,452,745 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103100   ⟹   XP_038959028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103101   ⟹   XP_038959029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103102   ⟹   XP_038959030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103103   ⟹   XP_038959031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103105   ⟹   XP_038959033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103106   ⟹   XP_038959034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103107   ⟹   XP_038959035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103108   ⟹   XP_038959036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103109   ⟹   XP_038959037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103110   ⟹   XP_038959038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103111   ⟹   XP_038959039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_039103113   ⟹   XP_038959041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
RefSeq Acc Id: XM_063282508   ⟹   XP_063138578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
RefSeq Acc Id: XM_063282510   ⟹   XP_063138580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
RefSeq Acc Id: XM_063282511   ⟹   XP_063138581
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
RefSeq Acc Id: XM_063282512   ⟹   XP_063138582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
RefSeq Acc Id: XM_063282514   ⟹   XP_063138584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
RefSeq Acc Id: XM_063282515   ⟹   XP_063138585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
RefSeq Acc Id: XM_063282516   ⟹   XP_063138586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
RefSeq Acc Id: XM_063282517   ⟹   XP_063138587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,842,449 (+)NCBI
RefSeq Acc Id: XR_005500367
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82243,819,560 - 243,846,544 (+)NCBI
mRatBN7.22241,159,481 - 241,186,591 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001032742 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426503 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426504 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426505 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426506 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426507 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426508 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426510 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426511 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426512 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426513 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426514 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426515 (Get FASTA)   NCBI Sequence Viewer  
  NP_001426516 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233569 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233573 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233574 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233575 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759777 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759778 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959028 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959029 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959030 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959031 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959033 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959034 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959035 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959036 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959037 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959038 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959039 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959041 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138578 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138580 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138581 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138582 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138584 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138585 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138586 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138587 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI07943 (Get FASTA)   NCBI Sequence Viewer  
  EDL82489 (Get FASTA)   NCBI Sequence Viewer  
  EDL82490 (Get FASTA)   NCBI Sequence Viewer  
  EDL82491 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061544
  ENSRNOP00000077531
  ENSRNOP00000095243
  ENSRNOP00000099811
  ENSRNOP00000103007
  ENSRNOP00000111951
GenBank Protein Q32PX7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001032742   ⟸   NM_001037653
- UniProtKB: Q32PX7 (UniProtKB/Swiss-Prot),   A0A140TAJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233569   ⟸   XM_006233507
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006233573   ⟸   XM_006233511
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_006233574   ⟸   XM_006233512
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_006233575   ⟸   XM_006233513
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_008759777   ⟸   XM_008761555
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_008759778   ⟸   XM_008761556
- Peptide Label: isoform X21
- Sequence:
Ensembl Acc Id: ENSRNOP00000061544   ⟸   ENSRNOT00000066199
RefSeq Acc Id: XP_038959028   ⟸   XM_039103100
- Peptide Label: isoform X1
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959033   ⟸   XM_039103105
- Peptide Label: isoform X5
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959030   ⟸   XM_039103102
- Peptide Label: isoform X3
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959039   ⟸   XM_039103111
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038959029   ⟸   XM_039103101
- Peptide Label: isoform X2
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959038   ⟸   XM_039103110
- Peptide Label: isoform X13
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959041   ⟸   XM_039103113
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038959031   ⟸   XM_039103103
- Peptide Label: isoform X4
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959034   ⟸   XM_039103106
- Peptide Label: isoform X6
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959036   ⟸   XM_039103108
- Peptide Label: isoform X10
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959035   ⟸   XM_039103107
- Peptide Label: isoform X7
- UniProtKB: A0A8I5YBV8 (UniProtKB/TrEMBL),   A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959037   ⟸   XM_039103109
- Peptide Label: isoform X11
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077531   ⟸   ENSRNOT00000094623
Ensembl Acc Id: ENSRNOP00000095243   ⟸   ENSRNOT00000110491
RefSeq Acc Id: XP_063138581   ⟸   XM_063282511
- Peptide Label: isoform X14
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138582   ⟸   XM_063282512
- Peptide Label: isoform X17
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138580   ⟸   XM_063282510
- Peptide Label: isoform X12
- UniProtKB: A0A140TAJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138578   ⟸   XM_063282508
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063138585   ⟸   XM_063282515
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063138587   ⟸   XM_063282517
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063138586   ⟸   XM_063282516
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063138584   ⟸   XM_063282514
- Peptide Label: isoform X23
Ensembl Acc Id: ENSRNOP00000111951   ⟸   ENSRNOT00000135698
Ensembl Acc Id: ENSRNOP00000103007   ⟸   ENSRNOT00000132758
Ensembl Acc Id: ENSRNOP00000099811   ⟸   ENSRNOT00000157036
Protein Domains
K Homology   KH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q32PX7-F1-model_v2 AlphaFold Q32PX7 1-639 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691824
Promoter ID:EPDNEW_R2349
Type:initiation region
Name:Fubp1_1
Description:far upstream element binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02257,425,679 - 257,425,739EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591892 AgrOrtholog
BioCyc Gene G2FUF-50806 BioCyc
Ensembl Genes ENSRNOG00000043370 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000066199 ENTREZGENE
  ENSRNOT00000094623 ENTREZGENE
  ENSRNOT00000110491 ENTREZGENE
  ENSRNOT00000132758 ENTREZGENE
  ENSRNOT00000135698 ENTREZGENE
  ENSRNOT00000157036 ENTREZGENE
Gene3D-CATH 3.30.1370.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7389449 IMAGE-MGC_LOAD
InterPro FUBP_C UniProtKB/Swiss-Prot
  KH-I_FUBP1_dom1 UniProtKB/Swiss-Prot
  KH-I_FUBP1_dom2 UniProtKB/Swiss-Prot
  KH-I_FUBP1_dom3 UniProtKB/Swiss-Prot
  KH-I_FUBP1_dom4 UniProtKB/Swiss-Prot
  KH_dom UniProtKB/Swiss-Prot
  KH_dom_type_1 UniProtKB/Swiss-Prot
  KH_dom_type_1_sf UniProtKB/Swiss-Prot
KEGG Report rno:654496 UniProtKB/Swiss-Prot
MGC_CLONE MGC:125009 IMAGE-MGC_LOAD
NCBI Gene 654496 ENTREZGENE
PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN UniProtKB/Swiss-Prot
Pfam DUF1897 UniProtKB/Swiss-Prot
  KH_1 UniProtKB/Swiss-Prot
PhenoGen Fubp1 PhenoGen
PROSITE KH_TYPE_1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000043370 RatGTEx
SMART SM00322 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot
UniProt A0A140TAJ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YBV8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6APY2_RAT UniProtKB/TrEMBL
  A0ABK0L2K3_RAT UniProtKB/TrEMBL
  A0ABK0L5U0_RAT UniProtKB/TrEMBL
  A0ABK0M270_RAT UniProtKB/TrEMBL
  A6HWK3_RAT UniProtKB/TrEMBL
  A6HWK5_RAT UniProtKB/TrEMBL
  FUBP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Fubp1  far upstream element binding protein 1  Fubp1  far upstream element (FUSE) binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Fubp1  far upstream element binding protein 1  Fubp1  far upstream element binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 Fubp1  far upstream element (FUSE) binding protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL