RH130397 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: RH130397

Symbol: RH130397
Previously known as: AI029314; 
RGD ID: 5044078
Expected Size: 194 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22226,377,844 - 226,378,048 (+)MAPPERmRatBN7.2
mRatBN7.22241,186,236 - 241,186,430 (+)MAPPERmRatBN7.2
Rnor_6.02257,452,391 - 257,452,584NCBIRnor6.0
Rnor_6.02243,127,299 - 243,127,502NCBIRnor6.0
Rnor_5.02276,129,138 - 276,129,331UniSTSRnor5.0
Rnor_5.02261,675,035 - 261,675,238UniSTSRnor5.0
RGSC_v3.42235,375,102 - 235,375,305UniSTSRGSC3.4
RGSC_v3.42250,760,862 - 250,761,055UniSTSRGSC3.4
Celera2233,120,904 - 233,121,097UniSTS
Celera2218,544,327 - 218,544,530UniSTS
RH 3.4 Map21607.5UniSTS
Cytogenetic Map2q44UniSTS
Cytogenetic Map2q45UniSTS
Is Marker For: Genes:   Fubp1   Dnajb14  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CACTGTTCCCATCACAGTAGCC
Reverse Primer AAAGAAGCAAATTGATCCCTGG
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1591949Dnajb14DnaJ heat shock protein family (Hsp40) member B142226358988226409461Rat
1307133Lamtor3late endosomal/lysosomal adaptor, MAPK and MTOR activator 32226411389226423612Rat
1310189Dapp1dual adaptor of phosphotyrosine and 3-phosphoinositides 12226425890226475445Rat
41077741LOC120100950uncharacterized LOC1201009502226438865226442299Rat
41162421LOC120100951uncharacterized LOC1201009512226480844226485594Rat
1590827Nlk-ps1nemo like kinase, pseudogene 12226517676226519713Rat
1591948Mindy3-ps1MINDY lysine 48 deubiquitinase 3, pseudogene 12226521817226527142Rat
7750470LOC102555623uncharacterized LOC1025556232226558532226578601Rat
7695964C2h4orf54similar to human chromosome 4 open reading frame 542226580582226599354Rat
1308388Mttpmicrosomal triglyceride transfer protein2226613090226654239Rat
1594565Trmt10atRNA methyltransferase 10A2226669445226684166Rat
1309170C2h4orf17similar to human chromosome 4 open reading frame 172226693808226722277Rat
1584721Metap2-ps4methionyl aminopeptidase 2, pseudogene 42226738713226740586Rat
621638Adh7alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide2226748724226763183Rat
2044Adh1calcohol dehydrogenase 1C (class I), gamma polypeptide2226797303226808892Rat
1310029Adh6aalcohol dehydrogenase 6A (class V)2226823775226846005Rat
1595864Adh1-ps1alcohol dehydrogenase 1C (class I), gamma polypeptide, pseudogene 12226862836226881171Rat
11424141LOC108350123uncharacterized LOC1083501232226879275226881249Rat
1306313Adh6alcohol dehydrogenase 6 (class V)2226903208226934564Rat
71028Adh4alcohol dehydrogenase 4 (class II), pi polypeptide2226948717226966747Rat
2292706Adh5alcohol dehydrogenase 5 (class III), chi polypeptide2226975184226987591Rat
1305545Metap1methionyl aminopeptidase 12226991305227024360Rat
7699806LOC102556448uncharacterized LOC1025564482227046507227052126Rat
69647Eif4eeukaryotic translation initiation factor 4E2227066519227099261Rat
9685091Mir1956microRNA 19562227066526227066588Rat
7743957LOC102547266uncharacterized LOC1025472662227238591227271656Rat
1303176Tspan5tetraspanin 52227294180227469361Rat
1560590Hspa8-ps20heat shock protein family A (Hsp70) member 8, pseudogene 202227488250227490321Rat
1308558Rap1gds1Rap1 GTPase-GDP dissociation stimulator 12227500366227645213Rat
41024593LOC120100955uncharacterized LOC1201009552227530080227561990Rat
41206447Nme2-ps3NME/NM23 nucleoside diphosphate kinase 2, pseudogene 32227696512227697495Rat
41129485LOC120101272small nucleolar RNA SNORA482227718981227719125Rat
1591946Stpg2sperm-tail PG-rich repeat containing 22227764266228285664Rat
6496054Cycs-ps2cytochrome c, somatic, pseudogene 22228057525228059101Rat
41210344LOC120101136U6 spliceosomal RNA2228059072228059178Rat
41257633LOC120101162U6 spliceosomal RNA2228169721228169827Rat
1590825Rps10-ps14ribosomal protein S10, pseudogene 142228301082228301564Rat
41331959LOC120101220U7 small nuclear RNA2228491892228491955Rat
41253766LOC120101108U2 spliceosomal RNA2228566040228566192Rat
40946169Trnav-aac23transfer RNA valine (anticodon AAC) 232228767419228767489Rat
2321664Aspscr1-ps1ASPSCR1 tether for SLC2A4, UBX domain containing, pseudogene 12228792286228793721Rat
41096450LOC120100956uncharacterized LOC1201009562229528518229545145Rat
9089379LOC103691720uncharacterized LOC1036917202229741900229876749Rat
620095Pdha2pyruvate dehydrogenase E1 subunit alpha 22229872300229873848Rat
735109Unc5cunc-5 netrin receptor C2230180353230535219Rat
1595863Bmpr1bbone morphogenetic protein receptor type 1B2230538252230871077Rat
621076Pdlim5PDZ and LIM domain 52230952251231120329Rat
41040699Rpl39-ps9ribosomal protein L39, pseudogene 92231154550231158955Rat
1311040Gbp5guanylate binding protein 52231237748231257071Rat
1583235Gbp7guanylate binding protein 72231275521231297289Rat
1310579Gbp4guanylate binding protein 42231304910231318883Rat
621810Gbp2guanylate binding protein 22231332488231348573Rat
1311877Gbp1guanylate binding protein 12231398136231432773Rat
1597766Gbp3guanylate binding protein 32231460032231500266Rat
41121145LOC120101154U6 spliceosomal RNA2231513755231513861Rat
1560801Gbp1-ps1guanylate binding protein 1, pseudogene 12231517485231525865Rat
1584233Gbp6-ps2guanylate binding protein 6, pseudogene 22231643579231672818Rat
1359262Kyat3kynurenine aminotransferase 32231701881231747462Rat
11361756LOC108350125uncharacterized LOC1083501252231759164231767187Rat
619735Gtf2bgeneral transcription factor IIB2231767317231785626Rat
41219769Rnu6-503RNA, U6 small nuclear 5032231776535231776641Rat
620146Pkn2protein kinase N22231793584231898953Rat
7740925LOC102546591uncharacterized LOC1025465912231915170231944275Rat
41182245LOC120100957uncharacterized LOC1201009572231978621231987035Rat
11452044LOC108350126uncharacterized LOC1083501262232084651232087782Rat
41097702LOC120100959uncharacterized LOC1201009592232435038232454741Rat
41187575LOC120100958uncharacterized LOC1201009582232439706232462245Rat
7633711LOC102546938uncharacterized LOC1025469382232552428232604876Rat
41208624LOC120100960uncharacterized LOC1201009602233102614233153460Rat
41287178LOC120100961uncharacterized LOC1201009612233138097233143134Rat
1305670Lmo4LIM domain only 42233264180233280881Rat
11484619LOC108350128uncharacterized LOC1083501282233470949233477899Rat
7597955LOC102549483uncharacterized LOC1025494832233490907233505798Rat
1305366Hs2st1heparan sulfate 2-O-sulfotransferase 12233508018233641769Rat
621291Selenofselenoprotein F2233642075233674853Rat
41169203LOC120100962uncharacterized LOC1201009622233642432233645492Rat
40954943LOC120100963uncharacterized LOC1201009632233732380233740609Rat
1304859Sh3glb1SH3 domain -containing GRB2-like endophilin B12233750838233784817Rat
621100Clca5chloride channel accessory 52233796569233818867Rat
1591945Clca4lchloride channel calcium activated 4-like2233826133233846137Rat
7715322LOC102549543uncharacterized LOC1025495432233826602233865540Rat
1303234Clca4chloride channel accessory 42233883625233904993Rat
1306258Clca1chloride channel accessory 12233938677233964369Rat
1304894Clca2chloride channel accessory 22233993619234022691Rat
1593831Odf2louter dense fiber of sperm tails 2-like2234036049234072751Rat
1565539Col24a1collagen type XXIV alpha 1 chain2234212256234469445Rat
1308723Znhit6zinc finger, HIT-type containing 62234486686234517952Rat
41217598LOC120101145U6 spliceosomal RNA2234500049234500155Rat
620763Ccn1cellular communication network factor 12234562410234565370Rat
7709092LOC102553018uncharacterized LOC1025530182234565400234641070Rat
70968Ddah1dimethylarginine dimethylaminohydrolase 12234667499234800322Rat
40962343LOC120100964uncharacterized LOC1201009642234780480234783439Rat
620544Bcl10BCL10, immune signaling adaptor2234840880234850520Rat
1560065C2h1orf52similar to human chromosome 1 open reading frame 522234853378234860045Rat
41195544Rnu5e-5RNA, U5E small nuclear 52234864277234864392Rat
1564206Syde2synapse defective Rho GTPase homolog 22234897975234930994Rat
1563105Dnai3dynein axonemal intermediate chain 32234947910235006173Rat
1308420Mcoln3mucolipin TRP cation channel 32235008716235042885Rat
1308884Mcoln2mucolipin TRP cation channel 22235053816235102703Rat
620565Lpar3lysophosphatidic acid receptor 32235125234235193916Rat
41114961Rnu6-777RNA, U6 small nuclear 7772235281040235281138Rat
708490Ssx2ipSSX family member 2 interacting protein2235298012235330750Rat
621338Ctbschitobiase2235340520235355091Rat
1359500Spata1spermatogenesis associated 12235349126235394578Rat
620807Gng5G protein subunit gamma 52235394680235403177Rat
1559755Rpf1ribosome production factor 12235403020235417546Rat
70901Dnase2bdeoxyribonuclease 2 beta2235470915235515211Rat
621369Uoxurate oxidase2235486867235523053Rat
708544Samd13sterile alpha motif domain containing 132235534699235540527Rat
41364636LOC120100965uncharacterized LOC1201009652235540646235542542Rat
40988647LOC120100966uncharacterized LOC1201009662235554316235556702Rat
1310574Prkacbprotein kinase cAMP-activated catalytic subunit beta2235636878235726928Rat
1566117Ttll7tubulin tyrosine ligase like 72235765786235889047Rat
11471726LOC108350293uncharacterized LOC1083502932236209335236213311Rat
40936735LOC120100967uncharacterized LOC1201009672236345988236352811Rat
41063911LOC120100969uncharacterized LOC1201009692236842537236851959Rat
41330340LOC120100968uncharacterized LOC1201009682236847492236881086Rat
2320955Esd-ps1esterase D, pseudogene 12237054176237055006Rat
41340482LOC120101330small nucleolar RNA SNORA172237234034237234163Rat
620835Adgrl2adhesion G protein-coupled receptor L22237696055238327141Rat
41141506LOC120101103uncharacterized LOC1201011032237751769237771224Rat
7705196LOC102547720uncharacterized LOC1025477202237932068237940538Rat
7526141LOC102547649uncharacterized LOC1025476492238137914238161725Rat
41251367LOC120101209U6 spliceosomal RNA2238220051238220154Rat
41294353LOC120101101uncharacterized LOC1201011012238222160238235082Rat
7563133LOC102547779uncharacterized LOC1025477792238387843238393363Rat
7603781LOC102547949uncharacterized LOC1025479492238524961238644513Rat
40941651LOC120101360small nucleolar RNA SNORA172238885848238885934Rat
7566012LOC102548042uncharacterized LOC1025480422239209201239226143Rat
11376688LOC108350139uncharacterized LOC1083501392239342624239423222Rat
41361361LOC120100970uncharacterized LOC1201009702239423440239435136Rat
7508827LOC102548237uncharacterized LOC1025482372239641025239655905Rat
2265Calm2-ps1calmodulin 2, pseudogene 12239897888239899007Rat
9285423LOC103691735uncharacterized LOC1036917352240213258240214625Rat
621136Adgrl4adhesion G protein-coupled receptor L42240354909240457231Rat
7682235LOC102548445uncharacterized LOC1025484452240490785240503872Rat
1310523Ifi44interferon-induced protein 442240626058240643879Rat
1595861Ifi44linterferon-induced protein 44-like2240668742240706425Rat
3436Ptgfrprostaglandin F receptor2240731185240766674Rat
9349957LOC103691736proteasome maturation protein pseudogene2240786521240786947Rat
1585253Ptp4a1l2protein tyrosine phosphatase 4A1 like 22240806880240807884Rat
41037774LOC120101214U7 small nuclear RNA2240874055240874116Rat
11426388LOC10835029540S ribosomal protein S6 pseudogene2240913042240913845Rat
7588281LOC102548701uncharacterized LOC1025487012240942249240945720Rat
1560751Gipc2GIPC PDZ domain containing family, member 22241030764241110236Rat
11512472LOC10835014240S ribosomal protein S10 pseudogene2241040365241053418Rat
1305826Dnajb4DnaJ heat shock protein family (Hsp40) member B42241129346241159272Rat
1591892Fubp1far upstream element binding protein 12241159481241186591Rat

Nucleotide Sequences
GenBank Nucleotide CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 499716 UniSTS
  654496 UniSTS
UniSTS 213681 UniSTS