FUBP1 (far upstream element binding protein 1) - Rat Genome Database

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Gene: FUBP1 (far upstream element binding protein 1) Homo sapiens
Analyze
Symbol: FUBP1
Name: far upstream element binding protein 1
RGD ID: 1344155
HGNC Page HGNC:4004
Description: Enables RNA binding activity. Involved in positive regulation of gene expression. Located in nucleoplasm. Implicated in hepatocellular carcinoma. Biomarker of breast cancer; carcinoma (multiple); liver cirrhosis; malignant astrocytoma; and stomach cancer.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DNA helicase V; far upstream element (FUSE) binding protein 1; far upstream element binding protein; far upstream element-binding protein 1; FBP; FUBP; FUSE binding protein 1; FUSE-binding protein 1; hDH V
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,944,055 - 77,979,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,944,055 - 77,979,110 (-)EnsemblGRCh38hg38GRCh38
GRCh37178,409,740 - 78,444,756 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,186,179 - 78,217,365 (-)NCBINCBI36Build 36hg18NCBI36
Build 34178,126,110 - 78,156,735NCBI
Celera176,652,669 - 76,683,855 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef176,545,210 - 76,576,401 (-)NCBIHuRef
CHM1_1178,529,931 - 78,561,136 (-)NCBICHM1_1
T2T-CHM13v2.0177,782,851 - 77,818,345 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP)
amphetamine  (ISO)
amphotericin B  (EXP)
aristolochic acid A  (EXP)
Aroclor 1254  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP)
arsenous acid  (EXP)
benzo[a]pyrene diol epoxide I  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A2  (ISO)
butyric acid  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
caffeine  (EXP)
carbamazepine  (EXP)
carbon nanotube  (ISO)
CGP 52608  (EXP)
choline  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
clozapine  (EXP)
cobalt dichloride  (EXP)
cocaine  (ISO)
copper(II) chloride  (ISO)
cordycepin  (ISO)
coumarin  (EXP)
cyclosporin A  (EXP)
dexamethasone  (EXP)
diallyl trisulfide  (EXP)
diarsenic trioxide  (EXP)
dorsomorphin  (EXP)
doxorubicin  (EXP)
enzyme inhibitor  (EXP)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (ISO)
FR900359  (EXP)
gentamycin  (ISO)
geraniol  (EXP)
hexadecanoic acid  (EXP)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
indometacin  (EXP)
ivermectin  (EXP)
ketamine  (ISO)
L-methionine  (ISO)
lead(0)  (EXP)
leflunomide  (EXP)
lipopolysaccharide  (EXP)
methoxychlor  (ISO)
miconazole  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (EXP)
ochratoxin A  (EXP)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (EXP)
pirinixic acid  (ISO)
quinoline  (EXP)
rac-lactic acid  (EXP)
resveratrol  (EXP)
SB 431542  (EXP)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP)
sodium dichromate  (ISO)
succimer  (ISO)
sunitinib  (EXP)
T-2 toxin  (ISO)
tamoxifen  (ISO)
tanespimycin  (EXP)
tert-butyl hydroperoxide  (EXP)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
Triptolide  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (EXP)
vinclozolin  (ISO)
vincristine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
nucleoplasm  (IDA)
nucleus  (IBA,IDA,IEA)
synapse  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Upregulation of far upstream element-binding protein 1 (FUBP1) promotes tumor proliferation and unfavorable prognosis in tongue squamous cell carcinoma. Chen Y, etal., Int J Biol Markers. 2020 Jun;35(2):56-65. doi: 10.1177/1724600820912252. Epub 2020 Apr 27.
2. FUSE Binding Protein 1 Facilitates Persistent Hepatitis C Virus Replication in Hepatoma Cells by Regulating Tumor Suppressor p53. Dixit U, etal., J Virol. 2015 Aug;89(15):7905-21. doi: 10.1128/JVI.00729-15. Epub 2015 May 20.
3. Far upstream element-binding protein 1 facilitates hepatocellular carcinoma invasion and metastasis. Fu PY, etal., Carcinogenesis. 2020 Jul 14;41(7):950-960. doi: 10.1093/carcin/bgz171.
4. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
5. Far upstream element-binding protein 1(FUBP1) expression differs between human colorectal cancer and non-cancerous tissue. Jia MY and Wang YJ, Neoplasma. 2014;61(5):533-40. doi: 10.4149/neo_2014_065.
6. Multiple Functions of Fubp1 in Cell Cycle Progression and Cell Survival. Kang M, etal., Cells. 2020 May 28;9(6). pii: cells9061347. doi: 10.3390/cells9061347.
7. Far upstream element-binding protein 1 is a prognostic biomarker and promotes nasopharyngeal carcinoma progression. Liu ZH, etal., Cell Death Dis. 2015 Oct 15;6:e1920. doi: 10.1038/cddis.2015.258.
8. Overexpression of the far upstream element binding protein 1 in hepatocellular carcinoma is required for tumor growth. Rabenhorst U, etal., Hepatology. 2009 Oct;50(4):1121-9. doi: 10.1002/hep.23098.
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. MiR-16 mediates trastuzumab and lapatinib response in ErbB-2-positive breast and gastric cancer via its novel targets CCNJ and FUBP1. Venturutti L, etal., Oncogene. 2016 Dec 1;35(48):6189-6202. doi: 10.1038/onc.2016.151. Epub 2016 May 9.
12. FBP1 promotes ovarian cancer development through the acceleration of cell cycle transition and metastasis. Xiong X, etal., Oncol Lett. 2018 Aug;16(2):1682-1688. doi: 10.3892/ol.2018.8872. Epub 2018 Jun 1.
13. Far upstream element-binding protein 1 (FUBP1) is a potential c-Myc regulator in esophageal squamous cell carcinoma (ESCC) and its expression promotes ESCC progression. Yang L, etal., Tumour Biol. 2016 Mar;37(3):4115-26. doi: 10.1007/s13277-015-4263-8. Epub 2015 Oct 21.
14. FBP1 and p27kip1 expression after sciatic nerve injury: implications for Schwann cells proliferation and differentiation. Yao L, etal., J Cell Biochem. 2014 Jan;115(1):130-40. doi: 10.1002/jcb.24640.
15. Far upstream element-binding protein 1 (FUBP1) is overexpressed in human gastric cancer tissue compared to non-cancerous tissue. Zhang F, etal., Onkologie. 2013;36(11):650-5. doi: 10.1159/000355659. Epub 2013 Oct 14.
16. Knockdown of FUSE binding protein 1 enhances the sensitivity of epithelial ovarian cancer cells to carboplatin. Zhang J, etal., Oncol Lett. 2017 Nov;14(5):5819-5824. doi: 10.3892/ol.2017.6978. Epub 2017 Sep 15.
17. MiR-16-1 Targeted Silences Far Upstream Element Binding Protein 1 to Advance the Chemosensitivity to Adriamycin in Gastric Cancer. Zhao D, etal., Pathol Oncol Res. 2018 Jul;24(3):483-488. doi: 10.1007/s12253-017-0263-x. Epub 2017 Jun 30.
18. The expression of FBP1 after traumatic brain injury and its role in astrocyte proliferation. Zhao W, etal., J Mol Neurosci. 2013 Nov;51(3):687-94. doi: 10.1007/s12031-013-0049-x.
Additional References at PubMed
PMID:8125259   PMID:10734235   PMID:10882074   PMID:11003644   PMID:11071946   PMID:11222755   PMID:11239393   PMID:11875576   PMID:12176931   PMID:12477932   PMID:12819782   PMID:15146197  
PMID:15302935   PMID:15489334   PMID:15502847   PMID:15592455   PMID:16159877   PMID:16169070   PMID:16289162   PMID:16344560   PMID:16628215   PMID:16672220   PMID:16712791   PMID:16964243  
PMID:17353931   PMID:17676665   PMID:18029348   PMID:19003864   PMID:19015535   PMID:19087307   PMID:19165527   PMID:19219071   PMID:19299420   PMID:19322201   PMID:19585652   PMID:19738201  
PMID:19928837   PMID:20348541   PMID:20420426   PMID:20467437   PMID:20802533   PMID:21145461   PMID:21285945   PMID:21319273   PMID:21367899   PMID:21779003   PMID:21817013   PMID:21855647  
PMID:21873635   PMID:21988832   PMID:22304920   PMID:22588899   PMID:22623428   PMID:22658674   PMID:22681889   PMID:22863883   PMID:22869205   PMID:22926519   PMID:22939629   PMID:23463506  
PMID:23818605   PMID:24030748   PMID:24117486   PMID:24189637   PMID:24347226   PMID:24457600   PMID:24711643   PMID:24798327   PMID:24966911   PMID:25796446   PMID:25921289   PMID:25963833  
PMID:26177862   PMID:26209609   PMID:26344197   PMID:26496610   PMID:26545048   PMID:26641092   PMID:26901106   PMID:26949251   PMID:27197155   PMID:27599538   PMID:27609421   PMID:28076379  
PMID:28225217   PMID:28302793   PMID:28533407   PMID:28611215   PMID:28780352   PMID:28977470   PMID:29031818   PMID:29117863   PMID:29128334   PMID:29365100   PMID:29395067   PMID:29467282  
PMID:29507755   PMID:29509190   PMID:29656893   PMID:29743362   PMID:29791485   PMID:29997244   PMID:30301530   PMID:30463901   PMID:30500954   PMID:30585729   PMID:30635626   PMID:30653565  
PMID:30711629   PMID:30737378   PMID:30778852   PMID:30890647   PMID:30948266   PMID:31046837   PMID:31300519   PMID:31343991   PMID:31511046   PMID:31553912   PMID:31570706   PMID:31586073  
PMID:32129710   PMID:32203420   PMID:32296183   PMID:32344865   PMID:32414810   PMID:32416067   PMID:32433053   PMID:32555178   PMID:32626933   PMID:32707033   PMID:32877691   PMID:33111431  
PMID:33476628   PMID:33545068   PMID:33649780   PMID:33954195   PMID:33961781   PMID:33987449   PMID:34079125   PMID:34116677   PMID:34189442   PMID:34244482   PMID:34274028   PMID:34288405  
PMID:34373451   PMID:34551306   PMID:34591612   PMID:34650049   PMID:34728620   PMID:34780483   PMID:34795231   PMID:34857952   PMID:35008187   PMID:35013218   PMID:35013556   PMID:35140242  
PMID:35235311   PMID:35271311   PMID:35439318   PMID:35446349   PMID:35545047   PMID:35546072   PMID:35583604   PMID:35687106   PMID:35785414   PMID:35831314   PMID:35906200   PMID:35944360  
PMID:35987950   PMID:36086966   PMID:36114006   PMID:36168627   PMID:36215168   PMID:36225252   PMID:36261009   PMID:36373674   PMID:36424410   PMID:36762613   PMID:37506698   PMID:37689310  
PMID:37827155   PMID:37932299  


Genomics

Comparative Map Data
FUBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,944,055 - 77,979,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,944,055 - 77,979,110 (-)EnsemblGRCh38hg38GRCh38
GRCh37178,409,740 - 78,444,756 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,186,179 - 78,217,365 (-)NCBINCBI36Build 36hg18NCBI36
Build 34178,126,110 - 78,156,735NCBI
Celera176,652,669 - 76,683,855 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef176,545,210 - 76,576,401 (-)NCBIHuRef
CHM1_1178,529,931 - 78,561,136 (-)NCBICHM1_1
T2T-CHM13v2.0177,782,851 - 77,818,345 (-)NCBIT2T-CHM13v2.0
Fubp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,916,059 - 151,942,467 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3151,916,059 - 151,942,463 (+)EnsemblGRCm39 Ensembl
GRCm383152,210,422 - 152,236,830 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3152,210,422 - 152,236,826 (+)EnsemblGRCm38mm10GRCm38
MGSCv373151,873,422 - 151,899,794 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363152,147,907 - 152,174,212 (+)NCBIMGSCv36mm8
Celera3158,688,293 - 158,714,689 (+)NCBICelera
Cytogenetic Map3H3NCBI
cM Map377.05NCBI
Fubp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,819,529 - 243,846,544 (+)NCBIGRCr8
mRatBN7.22241,159,481 - 241,186,591 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,159,512 - 241,186,602 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2248,973,302 - 248,996,209 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,860,320 - 246,883,226 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,759,691 - 241,782,653 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02257,425,676 - 257,452,745 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,425,679 - 257,449,568 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02276,102,238 - 276,129,492 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42250,749,095 - 250,777,521 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2233,094,240 - 233,117,161 (+)NCBICelera
Cytogenetic Map2q45NCBI
Fubp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542315,245,610 - 15,278,628 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542315,245,645 - 15,278,628 (+)NCBIChiLan1.0ChiLan1.0
FUBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21148,909,884 - 148,945,725 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,072,401 - 148,108,326 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,162,675 - 77,198,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,244,892 - 79,280,448 (-)NCBIpanpan1.1PanPan1.1panPan2
FUBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1668,923,215 - 68,963,766 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha671,580,919 - 71,621,261 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0669,508,282 - 69,548,642 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl669,508,277 - 69,548,630 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1669,015,218 - 69,054,818 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0668,959,769 - 69,000,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0669,446,187 - 69,486,514 (+)NCBIUU_Cfam_GSD_1.0
Fubp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,218,777 - 89,250,519 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365714,732,581 - 4,760,942 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365714,729,135 - 4,760,943 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FUBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6135,281,521 - 135,318,714 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16135,281,474 - 135,319,055 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26125,463,226 - 125,500,521 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FUBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12055,194,681 - 55,233,666 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2055,194,743 - 55,230,277 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603362,279,926 - 62,320,345 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fubp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474219,279,544 - 19,313,139 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FUBP1
24 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p31.1-13.3(chr1:72661709-107456880)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|See cases [RCV000051825] Chr1:72661709..107456880 [GRCh38]
Chr1:73127392..107999502 [GRCh37]
Chr1:72899980..107801025 [NCBI36]
Chr1:1p31.1-13.3
pathogenic
NM_003902.5(FUBP1):c.243A>C (p.Gln81His) single nucleotide variant not specified [RCV000121142] Chr1:77968172 [GRCh38]
Chr1:78433856 [GRCh37]
Chr1:1p31.1
not provided
NM_003902.5(FUBP1):c.538G>T (p.Gly180Cys) single nucleotide variant not specified [RCV000121143] Chr1:77965167 [GRCh38]
Chr1:78430851 [GRCh37]
Chr1:1p31.1
not provided
NM_003902.5(FUBP1):c.56G>A (p.Gly19Asp) single nucleotide variant not specified [RCV000121137] Chr1:77978949 [GRCh38]
Chr1:78444633 [GRCh37]
Chr1:1p31.1
not provided
NM_003902.5(FUBP1):c.992G>A (p.Arg331Gln) single nucleotide variant not specified [RCV000121138] Chr1:77964111 [GRCh38]
Chr1:78429796 [GRCh37]
Chr1:1p31.1
not provided
NM_003902.5(FUBP1):c.1429C>T (p.Pro477Ser) single nucleotide variant not specified [RCV000121139] Chr1:77960411 [GRCh38]
Chr1:78426096 [GRCh37]
Chr1:1p31.1
uncertain significance|not provided
NM_003902.5(FUBP1):c.1588A>G (p.Thr530Ala) single nucleotide variant not specified [RCV000121140] Chr1:77956689 [GRCh38]
Chr1:78422374 [GRCh37]
Chr1:1p31.1
not provided
NM_003902.5(FUBP1):c.1801A>G (p.Thr601Ala) single nucleotide variant not specified [RCV000121141] Chr1:77949280 [GRCh38]
Chr1:78414965 [GRCh37]
Chr1:1p31.1
not provided
GRCh38/hg38 1p32.1-22.3(chr1:58819605-86098611)x1 copy number loss See cases [RCV000136913] Chr1:58819605..86098611 [GRCh38]
Chr1:59285277..86564294 [GRCh37]
Chr1:59057865..86336882 [NCBI36]
Chr1:1p32.1-22.3
pathogenic
GRCh38/hg38 1p31.1-22.2(chr1:76419302-88628464)x1 copy number loss See cases [RCV000138957] Chr1:76419302..88628464 [GRCh38]
Chr1:76884987..89094147 [GRCh37]
Chr1:76657575..88866735 [NCBI36]
Chr1:1p31.1-22.2
pathogenic
GRCh38/hg38 1p31.1(chr1:77777821-79122486)x1 copy number loss See cases [RCV000140751] Chr1:77777821..79122486 [GRCh38]
Chr1:78243506..79588171 [GRCh37]
Chr1:78016094..79360759 [NCBI36]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.1611G>A (p.Trp537Ter) single nucleotide variant Breast ductal adenocarcinoma [RCV000207329] Chr1:77956666 [GRCh38]
Chr1:78422351 [GRCh37]
Chr1:1p31.1
uncertain significance
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
NM_003902.5(FUBP1):c.1042-8C>G single nucleotide variant not specified [RCV000454438] Chr1:77963723 [GRCh38]
Chr1:78429408 [GRCh37]
Chr1:1p31.1
benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p31.1-22.1(chr1:72044544-92505091)x1 copy number loss See cases [RCV000510161] Chr1:72044544..92505091 [GRCh37]
Chr1:1p31.1-22.1
pathogenic
GRCh37/hg19 1p31.3-22.3(chr1:64321264-88153669)x1 copy number loss See cases [RCV000511392] Chr1:64321264..88153669 [GRCh37]
Chr1:1p31.3-22.3
pathogenic|uncertain significance
GRCh37/hg19 1p31.1(chr1:74848936-80324850)x3 copy number gain See cases [RCV000510973] Chr1:74848936..80324850 [GRCh37]
Chr1:1p31.1
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p31.3-31.1(chr1:61351024-79583933)x1 copy number loss See cases [RCV000512152] Chr1:61351024..79583933 [GRCh37]
Chr1:1p31.3-31.1
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_003902.5(FUBP1):c.1203C>T (p.Ser401=) single nucleotide variant not provided [RCV000964814] Chr1:77962911 [GRCh38]
Chr1:78428596 [GRCh37]
Chr1:1p31.1
benign
NM_003902.5(FUBP1):c.1802C>T (p.Thr601Ile) single nucleotide variant not specified [RCV004311116] Chr1:77949279 [GRCh38]
Chr1:78414964 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.54T>C (p.Gly18=) single nucleotide variant not provided [RCV000958459] Chr1:77978951 [GRCh38]
Chr1:78444635 [GRCh37]
Chr1:1p31.1
benign
GRCh37/hg19 1p31.1(chr1:78186240-81611776)x3 copy number gain not provided [RCV000846841] Chr1:78186240..81611776 [GRCh37]
Chr1:1p31.1
uncertain significance
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1
uncertain significance
Single allele deletion not provided [RCV000844927] Chr1:66085524..88429789 [GRCh37]
Chr1:1p31.3-22.2
not provided
GRCh37/hg19 1p31.1(chr1:78186240-81611776)x3 copy number gain not provided [RCV000847217] Chr1:78186240..81611776 [GRCh37]
Chr1:1p31.1
uncertain significance
GRCh37/hg19 1p31.1(chr1:78257937-79159519)x3 copy number gain not provided [RCV001005117] Chr1:78257937..79159519 [GRCh37]
Chr1:1p31.1
uncertain significance
GRCh37/hg19 1p31.3-22.3(chr1:67851233-86101340)x1 copy number loss not provided [RCV000846441] Chr1:67851233..86101340 [GRCh37]
Chr1:1p31.3-22.3
pathogenic
GRCh37/hg19 1p31.3-22.1(chr1:68180293-92731957) copy number loss not specified [RCV002053392] Chr1:68180293..92731957 [GRCh37]
Chr1:1p31.3-22.1
pathogenic
Single allele duplication not specified [RCV002286371] Chr1:66885559..77949895 [GRCh38]
Chr1:1p31.3-31.1
uncertain significance
GRCh37/hg19 1p31.1(chr1:78356361-78648139)x3 copy number gain not provided [RCV002472876] Chr1:78356361..78648139 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.1349C>T (p.Pro450Leu) single nucleotide variant not specified [RCV004170735] Chr1:77960491 [GRCh38]
Chr1:78426176 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.548C>T (p.Pro183Leu) single nucleotide variant not specified [RCV004225958] Chr1:77965157 [GRCh38]
Chr1:78430841 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.1285A>G (p.Ile429Val) single nucleotide variant not specified [RCV004083588] Chr1:77962829 [GRCh38]
Chr1:78428514 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.1327A>G (p.Ile443Val) single nucleotide variant not specified [RCV004091534] Chr1:77962787 [GRCh38]
Chr1:78428472 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.1481C>G (p.Pro494Arg) single nucleotide variant not specified [RCV004113831] Chr1:77960359 [GRCh38]
Chr1:78426044 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.1127T>C (p.Leu376Pro) single nucleotide variant not specified [RCV004279657] Chr1:77963630 [GRCh38]
Chr1:78429315 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.155C>T (p.Ser52Leu) single nucleotide variant not specified [RCV004272755] Chr1:77969981 [GRCh38]
Chr1:78435665 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.1670C>T (p.Ala557Val) single nucleotide variant not specified [RCV004248754] Chr1:77956607 [GRCh38]
Chr1:78422292 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.1624G>A (p.Ala542Thr) single nucleotide variant not specified [RCV004357374] Chr1:77956653 [GRCh38]
Chr1:78422338 [GRCh37]
Chr1:1p31.1
uncertain significance
GRCh37/hg19 1p31.1(chr1:78421460-79541287)x3 copy number gain not provided [RCV003484020] Chr1:78421460..79541287 [GRCh37]
Chr1:1p31.1
uncertain significance
GRCh37/hg19 1p31.1-22.3(chr1:73616197-87012961)x1 copy number loss not provided [RCV003885448] Chr1:73616197..87012961 [GRCh37]
Chr1:1p31.1-22.3
likely pathogenic
NM_003902.5(FUBP1):c.641G>A (p.Arg214Gln) single nucleotide variant not specified [RCV004387255] Chr1:77964964 [GRCh38]
Chr1:78430649 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.443G>A (p.Cys148Tyr) single nucleotide variant not specified [RCV004387253] Chr1:77966724 [GRCh38]
Chr1:78432408 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.1285A>T (p.Ile429Phe) single nucleotide variant not specified [RCV004387251] Chr1:77962829 [GRCh38]
Chr1:78428514 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.498G>T (p.Gln166His) single nucleotide variant not specified [RCV004387254] Chr1:77965207 [GRCh38]
Chr1:78430891 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.1517C>T (p.Ala506Val) single nucleotide variant not specified [RCV004387252] Chr1:77960243 [GRCh38]
Chr1:78425928 [GRCh37]
Chr1:1p31.1
uncertain significance
NM_003902.5(FUBP1):c.1115C>A (p.Pro372Gln) single nucleotide variant not specified [RCV004387250] Chr1:77963642 [GRCh38]
Chr1:78429327 [GRCh37]
Chr1:1p31.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1126
Count of miRNA genes:521
Interacting mature miRNAs:569
Transcripts:ENST00000294623, ENST00000370767, ENST00000370768, ENST00000421641, ENST00000436586, ENST00000470287, ENST00000474632, ENST00000480673, ENST00000483894, ENST00000487684, ENST00000488814, ENST00000489495, ENST00000492405, ENST00000492724
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-75049  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,413,052 - 78,413,155UniSTSGRCh37
Build 36178,185,640 - 78,185,743RGDNCBI36
Celera176,652,130 - 76,652,233RGD
Cytogenetic Map1p31.1UniSTS
HuRef176,544,671 - 76,544,774UniSTS
TNG Radiation Hybrid Map144812.0UniSTS
GeneMap99-GB4 RH Map1216.0UniSTS
NCBI RH Map1518.0UniSTS
D1S257E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,413,059 - 78,413,155UniSTSGRCh37
Build 36178,185,647 - 78,185,743RGDNCBI36
Celera176,652,137 - 76,652,233RGD
Cytogenetic Map1p31.1UniSTS
HuRef176,544,678 - 76,544,774UniSTS
Whitehead-YAC Contig Map1 UniSTS
AL034068  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,423,029 - 78,423,182UniSTSGRCh37
Build 36178,195,617 - 78,195,770RGDNCBI36
Celera176,662,107 - 76,662,260RGD
Cytogenetic Map1p31.1UniSTS
HuRef176,554,648 - 76,554,801UniSTS
SHGC-155233  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,420,265 - 78,420,561UniSTSGRCh37
Build 36178,192,853 - 78,193,149RGDNCBI36
Celera176,659,343 - 76,659,639RGD
Cytogenetic Map1p31.1UniSTS
HuRef176,551,884 - 76,552,180UniSTS
TNG Radiation Hybrid Map144846.0UniSTS
SHGC-75042  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,418,135 - 78,418,271UniSTSGRCh37
Build 36178,190,723 - 78,190,859RGDNCBI36
Celera176,657,213 - 76,657,349RGD
Cytogenetic Map1p31.1UniSTS
HuRef176,549,754 - 76,549,890UniSTS
TNG Radiation Hybrid Map144840.0UniSTS
GeneMap99-GB4 RH Map1209.19UniSTS
NCBI RH Map1518.0UniSTS
SHGC-75032  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,423,860 - 78,424,021UniSTSGRCh37
Build 36178,196,448 - 78,196,609RGDNCBI36
Celera176,662,938 - 76,663,099RGD
Cytogenetic Map1p31.1UniSTS
HuRef176,555,479 - 76,555,640UniSTS
TNG Radiation Hybrid Map144852.0UniSTS
GeneMap99-GB4 RH Map1193.94UniSTS
FUBP1_2823  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,414,046 - 78,414,559UniSTSGRCh37
Build 36178,186,634 - 78,187,147RGDNCBI36
Celera176,653,124 - 76,653,637RGD
HuRef176,545,665 - 76,546,178UniSTS
FUBP1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,414,109 - 78,414,263UniSTSGRCh37
Celera176,653,187 - 76,653,341UniSTS
HuRef176,545,728 - 76,545,882UniSTS
D1S3413  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1p31.1UniSTS
Whitehead-YAC Contig Map1 UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2428 2286 1538 442 1414 284 4291 1994 2950 394 1444 1605 171 1204 2728 4
Low 11 704 188 182 537 181 65 203 783 25 13 8 4 1 60 1 2
Below cutoff 1 3 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_033243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001303433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017002739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017002740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017002743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007064838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007064839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007064840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007064841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007064842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007064843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007064844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_946790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_946791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB209366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC096948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL049951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL532525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW295160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ649331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ934904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX538272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB133133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN291186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA113820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ900935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF510733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY569017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U05040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000294623   ⟹   ENSP00000294623
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,946,482 - 77,979,087 (-)Ensembl
RefSeq Acc Id: ENST00000370767   ⟹   ENSP00000359803
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,948,405 - 77,979,092 (-)Ensembl
RefSeq Acc Id: ENST00000370768   ⟹   ENSP00000359804
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,944,055 - 77,979,072 (-)Ensembl
RefSeq Acc Id: ENST00000421641   ⟹   ENSP00000402630
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,944,356 - 77,979,110 (-)Ensembl
RefSeq Acc Id: ENST00000470287
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,955,255 - 77,960,785 (-)Ensembl
RefSeq Acc Id: ENST00000474632
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,944,055 - 77,947,692 (-)Ensembl
RefSeq Acc Id: ENST00000480673
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,944,055 - 77,946,576 (-)Ensembl
RefSeq Acc Id: ENST00000483894
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,944,055 - 77,945,895 (-)Ensembl
RefSeq Acc Id: ENST00000487684
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,948,970 - 77,955,458 (-)Ensembl
RefSeq Acc Id: ENST00000488814
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,944,055 - 77,949,267 (-)Ensembl
RefSeq Acc Id: ENST00000489495
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,944,055 - 77,948,333 (-)Ensembl
RefSeq Acc Id: ENST00000492405
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,944,055 - 77,955,282 (-)Ensembl
RefSeq Acc Id: ENST00000492724
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,944,055 - 77,955,339 (-)Ensembl
RefSeq Acc Id: ENST00000703586   ⟹   ENSP00000515388
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,944,356 - 77,979,077 (-)Ensembl
RefSeq Acc Id: ENST00000703600   ⟹   ENSP00000515389
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,948,405 - 77,949,434 (-)Ensembl
RefSeq Acc Id: NM_001303433   ⟹   NP_001290362
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
CHM1_1178,530,427 - 78,561,248 (-)NCBI
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001376055   ⟹   NP_001362984
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001376056   ⟹   NP_001362985
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001376057   ⟹   NP_001362986
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001410804   ⟹   NP_001397733
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: NM_003902   ⟹   NP_003893
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
GRCh37178,409,740 - 78,444,839 (-)NCBI
Build 36178,186,179 - 78,217,365 (-)NCBI Archive
HuRef176,545,210 - 76,576,401 (-)ENTREZGENE
CHM1_1178,530,427 - 78,561,248 (-)NCBI
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130152
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,946,482 - 77,979,072 (-)NCBI
CHM1_1178,528,507 - 78,561,248 (-)NCBI
T2T-CHM13v2.0177,785,278 - 77,817,867 (-)NCBI
Sequence:
RefSeq Acc Id: NR_146539
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
Sequence:
RefSeq Acc Id: NR_146540
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
Sequence:
RefSeq Acc Id: NR_164755
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
Sequence:
RefSeq Acc Id: NR_164756
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017002739   ⟹   XP_016858228
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017002740   ⟹   XP_016858229
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017002743   ⟹   XP_016858232
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047433485   ⟹   XP_047289441
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,501 (-)NCBI
RefSeq Acc Id: XM_047433487   ⟹   XP_047289443
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,501 (-)NCBI
RefSeq Acc Id: XM_047433488   ⟹   XP_047289444
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,501 (-)NCBI
RefSeq Acc Id: XM_047433489   ⟹   XP_047289445
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,501 (-)NCBI
RefSeq Acc Id: XM_047433491   ⟹   XP_047289447
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
RefSeq Acc Id: XM_047433492   ⟹   XP_047289448
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,501 (-)NCBI
RefSeq Acc Id: XM_047433493   ⟹   XP_047289449
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,501 (-)NCBI
RefSeq Acc Id: XM_054339452   ⟹   XP_054195427
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XM_054339453   ⟹   XP_054195428
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,818,230 (-)NCBI
RefSeq Acc Id: XM_054339454   ⟹   XP_054195429
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XM_054339455   ⟹   XP_054195430
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XM_054339456   ⟹   XP_054195431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,818,289 (-)NCBI
RefSeq Acc Id: XM_054339457   ⟹   XP_054195432
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,818,289 (-)NCBI
RefSeq Acc Id: XM_054339458   ⟹   XP_054195433
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,818,250 (-)NCBI
RefSeq Acc Id: XM_054339459   ⟹   XP_054195434
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,818,289 (-)NCBI
RefSeq Acc Id: XM_054339460   ⟹   XP_054195435
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XM_054339461   ⟹   XP_054195436
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XM_054339462   ⟹   XP_054195437
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,818,289 (-)NCBI
RefSeq Acc Id: XM_054339463   ⟹   XP_054195438
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,818,345 (-)NCBI
RefSeq Acc Id: XR_001737514
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001737517
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
Sequence:
RefSeq Acc Id: XR_007064838
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
RefSeq Acc Id: XR_007064839
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,501 (-)NCBI
RefSeq Acc Id: XR_007064840
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,501 (-)NCBI
RefSeq Acc Id: XR_007064841
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
RefSeq Acc Id: XR_007064842
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
RefSeq Acc Id: XR_007064843
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
RefSeq Acc Id: XR_007064844
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
RefSeq Acc Id: XR_008486189
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XR_008486190
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XR_008486191
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XR_008486192
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XR_008486193
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XR_008486194
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,818,289 (-)NCBI
RefSeq Acc Id: XR_008486195
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XR_008486196
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,818,289 (-)NCBI
RefSeq Acc Id: XR_008486197
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XR_008486198
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XR_008486199
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XR_008486200
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0177,782,851 - 77,817,867 (-)NCBI
RefSeq Acc Id: XR_946790
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,944,055 - 77,979,072 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001290362 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362984 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362985 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362986 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397733 (Get FASTA)   NCBI Sequence Viewer  
  NP_003893 (Get FASTA)   NCBI Sequence Viewer  
  XP_016858228 (Get FASTA)   NCBI Sequence Viewer  
  XP_016858229 (Get FASTA)   NCBI Sequence Viewer  
  XP_016858232 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289441 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289443 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289444 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289445 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289447 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289448 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289449 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195427 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195428 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195429 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195430 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195431 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195432 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195433 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195434 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195435 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195436 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195437 (Get FASTA)   NCBI Sequence Viewer  
  XP_054195438 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA17976 (Get FASTA)   NCBI Sequence Viewer  
  AAH10083 (Get FASTA)   NCBI Sequence Viewer  
  AAH17247 (Get FASTA)   NCBI Sequence Viewer  
  ADO22452 (Get FASTA)   NCBI Sequence Viewer  
  ARV77948 (Get FASTA)   NCBI Sequence Viewer  
  BAD92603 (Get FASTA)   NCBI Sequence Viewer  
  BAG61843 (Get FASTA)   NCBI Sequence Viewer  
  BAG63073 (Get FASTA)   NCBI Sequence Viewer  
  BAG64590 (Get FASTA)   NCBI Sequence Viewer  
  EAX06356 (Get FASTA)   NCBI Sequence Viewer  
  EAX06357 (Get FASTA)   NCBI Sequence Viewer  
  EAX06358 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000294623
  ENSP00000294623.4
  ENSP00000359803.1
  ENSP00000359804
  ENSP00000359804.2
  ENSP00000402630
  ENSP00000402630.2
  ENSP00000515388
  ENSP00000515388.1
  ENSP00000515389.1
GenBank Protein Q96AE4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_003893   ⟸   NM_003902
- Peptide Label: isoform 2
- UniProtKB: Q12828 (UniProtKB/Swiss-Prot),   Q96AE4 (UniProtKB/Swiss-Prot),   A0A1Z1G4M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001290362   ⟸   NM_001303433
- Peptide Label: isoform 1
- UniProtKB: B4DT31 (UniProtKB/TrEMBL),   E9PCF5 (UniProtKB/TrEMBL),   A0A1Z1G4M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016858228   ⟸   XM_017002739
- Peptide Label: isoform X1
- UniProtKB: A0A1Z1G4M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016858232   ⟸   XM_017002743
- Peptide Label: isoform X8
- UniProtKB: A0A384MDX9 (UniProtKB/TrEMBL),   A0A1Z1G4M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016858229   ⟸   XM_017002740
- Peptide Label: isoform X2
- UniProtKB: A0A1Z1G4M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001362985   ⟸   NM_001376056
- Peptide Label: isoform 4
- UniProtKB: A0A994J3Q8 (UniProtKB/TrEMBL),   A0A1Z1G4M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001362986   ⟸   NM_001376057
- Peptide Label: isoform 5
- UniProtKB: A0A1Z1G4M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001362984   ⟸   NM_001376055
- Peptide Label: isoform 3
- UniProtKB: A0A1Z1G4M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSP00000359803   ⟸   ENST00000370767
RefSeq Acc Id: ENSP00000359804   ⟸   ENST00000370768
RefSeq Acc Id: ENSP00000294623   ⟸   ENST00000294623
RefSeq Acc Id: ENSP00000402630   ⟸   ENST00000421641
RefSeq Acc Id: XP_047289443   ⟸   XM_047433487
- Peptide Label: isoform X4
- UniProtKB: A0A994J3Q8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047289449   ⟸   XM_047433493
- Peptide Label: isoform X10
RefSeq Acc Id: XP_047289441   ⟸   XM_047433485
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047289448   ⟸   XM_047433492
- Peptide Label: isoform X9
- UniProtKB: Q96AE4 (UniProtKB/Swiss-Prot),   Q12828 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047289445   ⟸   XM_047433489
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047289444   ⟸   XM_047433488
- Peptide Label: isoform X5
- UniProtKB: E9PCF5 (UniProtKB/TrEMBL),   B4DT31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047289447   ⟸   XM_047433491
- Peptide Label: isoform X7
RefSeq Acc Id: ENSP00000515389   ⟸   ENST00000703600
RefSeq Acc Id: ENSP00000515388   ⟸   ENST00000703586
RefSeq Acc Id: NP_001397733   ⟸   NM_001410804
- Peptide Label: isoform 6
- UniProtKB: C9JSZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054195438   ⟸   XM_054339463
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054195432   ⟸   XM_054339457
- Peptide Label: isoform X4
- UniProtKB: A0A994J3Q8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054195431   ⟸   XM_054339456
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054195437   ⟸   XM_054339462
- Peptide Label: isoform X9
- UniProtKB: Q96AE4 (UniProtKB/Swiss-Prot),   Q12828 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054195434   ⟸   XM_054339459
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054195433   ⟸   XM_054339458
- Peptide Label: isoform X5
- UniProtKB: E9PCF5 (UniProtKB/TrEMBL),   B4DT31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054195428   ⟸   XM_054339453
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054195436   ⟸   XM_054339461
- Peptide Label: isoform X8
- UniProtKB: A0A384MDX9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054195430   ⟸   XM_054339455
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054195427   ⟸   XM_054339452
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054195435   ⟸   XM_054339460
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054195429   ⟸   XM_054339454
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96AE4-F1-model_v2 AlphaFold Q96AE4 1-644 view protein structure

Promoters
RGD ID:6855962
Promoter ID:EPDNEW_H1146
Type:initiation region
Name:FUBP1_1
Description:far upstream element binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,979,064 - 77,979,124EPDNEW
RGD ID:6785613
Promoter ID:HG_KWN:3354
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000098141
Position:
Human AssemblyChrPosition (strand)Source
Build 36178,183,611 - 78,184,111 (-)MPROMDB
RGD ID:6785612
Promoter ID:HG_KWN:3355
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   Lymphoblastoid
Transcripts:OTTHUMT00000098137,   OTTHUMT00000098140,   OTTHUMT00000098142
Position:
Human AssemblyChrPosition (strand)Source
Build 36178,185,551 - 78,187,382 (-)MPROMDB
RGD ID:6785610
Promoter ID:HG_KWN:3356
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000098136
Position:
Human AssemblyChrPosition (strand)Source
Build 36178,187,461 - 78,188,512 (-)MPROMDB
RGD ID:6785611
Promoter ID:HG_KWN:3357
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000098138,   OTTHUMT00000098139,   OTTHUMT00000098143
Position:
Human AssemblyChrPosition (strand)Source
Build 36178,193,461 - 78,193,961 (-)MPROMDB
RGD ID:6785614
Promoter ID:HG_KWN:3358
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:OTTHUMT00000098144
Position:
Human AssemblyChrPosition (strand)Source
Build 36178,198,606 - 78,199,612 (-)MPROMDB
RGD ID:6785098
Promoter ID:HG_KWN:3359
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000294623,   ENST00000370767,   ENST00000370773,   ENST00000394922,   NM_003902,   OTTHUMT00000098135,   OTTHUMT00000098622,   OTTHUMT00000098623,   OTTHUMT00000098624,   OTTHUMT00000098630,   UC001DIH.2
Position:
Human AssemblyChrPosition (strand)Source
Build 36178,216,191 - 78,217,622 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:4004 AgrOrtholog
COSMIC FUBP1 COSMIC
Ensembl Genes ENSG00000162613 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000294623 ENTREZGENE
  ENST00000294623.8 UniProtKB/Swiss-Prot
  ENST00000370767.5 UniProtKB/TrEMBL
  ENST00000370768 ENTREZGENE
  ENST00000370768.7 UniProtKB/Swiss-Prot
  ENST00000421641 ENTREZGENE
  ENST00000421641.2 UniProtKB/TrEMBL
  ENST00000703586 ENTREZGENE
  ENST00000703586.1 UniProtKB/TrEMBL
  ENST00000703600.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000162613 GTEx
HGNC ID HGNC:4004 ENTREZGENE
Human Proteome Map FUBP1 Human Proteome Map
InterPro FUBP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH-I_FUBP1_dom1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH-I_FUBP1_dom2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH-I_FUBP1_dom3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH-I_FUBP1_dom4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:8880 UniProtKB/Swiss-Prot
NCBI Gene 8880 ENTREZGENE
OMIM 603444 OMIM
PANTHER FAR UPSTREAM ELEMENT-BINDING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH DOMAIN CONTAINING RNA BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1897 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA28420 PharmGKB
PROSITE KH_TYPE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Z1G4M2 ENTREZGENE, UniProtKB/TrEMBL
  A0A384MDX9 ENTREZGENE, UniProtKB/TrEMBL
  A0A994J3Q8 ENTREZGENE, UniProtKB/TrEMBL
  A0A994J6G7_HUMAN UniProtKB/TrEMBL
  B4DT31 ENTREZGENE, UniProtKB/TrEMBL
  C9JSZ1 ENTREZGENE, UniProtKB/TrEMBL
  E9PCF5 ENTREZGENE
  E9PEB5_HUMAN UniProtKB/TrEMBL
  FUBP1_HUMAN UniProtKB/Swiss-Prot
  Q12828 ENTREZGENE
  Q6PJY1_HUMAN UniProtKB/TrEMBL
  Q96AE4 ENTREZGENE
UniProt Secondary E9PCF5 UniProtKB/TrEMBL
  Q12828 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-10 FUBP1  far upstream element binding protein 1  FUBP1  far upstream element (FUSE) binding protein 1  Symbol and/or name change 5135510 APPROVED