Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Glyctk | Rat | D-glyceric aciduria | | ISO | GLYCTK (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Glyctk | Rat | D-glyceric aciduria | | ISO | GLYCTK (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| # | Reference Title | Reference Citation |
| 1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | Purification of rat liver glycerate kinase and studies of its enzymatic and immunological properties. | Katayama H, etal., J Biochem. 1980 Sep;88(3):765-73. doi: 10.1093/oxfordjournals.jbchem.a133029. |
| 3. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
| 4. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
| 5. | SMPDB Annotation Import Pipeline | Pipeline to import SMPDB annotations from SMPDB into RGD |
| 6. | GOA pipeline | RGD automated data pipeline |
| 7. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 8. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
| Glyctk (Rattus norvegicus - Norway rat) |
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| GLYCTK (Homo sapiens - human) |
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| Glyctk (Mus musculus - house mouse) |
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| Glyctk (Chinchilla lanigera - long-tailed chinchilla) |
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| GLYCTK (Pan paniscus - bonobo/pygmy chimpanzee) |
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| GLYCTK (Canis lupus familiaris - dog) |
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| Glyctk (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| GLYCTK (Sus scrofa - pig) |
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| GLYCTK (Chlorocebus sabaeus - green monkey) |
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| Glyctk (Heterocephalus glaber - naked mole-rat) |
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| Glyctk (Rattus rattus - black rat) |
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Variants in Glyctk
20 total Variants
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| The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
| BF397866 |
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| RH137469 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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| 16 | 12 | 67 | 162 | 91 | 90 | 59 | 90 | 59 | 6 | 354 | 190 | 11 | 141 | 81 | 92 | 31 | 17 | 17 |
| RefSeq Transcripts | NM_001109449 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006243856 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006243857 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039082152 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_039082155 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_063266141 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_063266142 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_063266143 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | BC105621 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| CH473954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| JAXUCZ010000008 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| Ensembl Acc Id: | ENSRNOT00000074595 ⟹ ENSRNOP00000064339 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| RefSeq Acc Id: | NM_001109449 ⟹ NP_001102919 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_006243856 ⟹ XP_006243918 | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_006243857 ⟹ XP_006243919 | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_039082152 ⟹ XP_038938080 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039082155 ⟹ XP_038938083 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_063266141 ⟹ XP_063122211 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_063266142 ⟹ XP_063122212 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_063266143 ⟹ XP_063122213 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| Protein RefSeqs | NP_001102919 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006243918 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006243919 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038938080 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_038938083 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_063122211 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_063122212 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_063122213 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAI05622 | (Get FASTA) | NCBI Sequence Viewer |
| EDL77333 | (Get FASTA) | NCBI Sequence Viewer | |
| Ensembl Protein | ENSRNOP00000064339 | ||
| ENSRNOP00000064339.1 | |||
| GenBank Protein | Q0VGK3 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_001102919 ⟸ NM_001109449 |
| - UniProtKB: | Q0VGK3 (UniProtKB/Swiss-Prot), A6I2P3 (UniProtKB/TrEMBL) |
| - Sequence: |
| RefSeq Acc Id: | XP_006243919 ⟸ XM_006243857 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q0VGK3 (UniProtKB/Swiss-Prot), A6I2P3 (UniProtKB/TrEMBL) |
| - Sequence: |
| RefSeq Acc Id: | XP_006243918 ⟸ XM_006243856 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q0VGK3 (UniProtKB/Swiss-Prot), A6I2P3 (UniProtKB/TrEMBL) |
| - Sequence: |
| Ensembl Acc Id: | ENSRNOP00000064339 ⟸ ENSRNOT00000074595 |
| RefSeq Acc Id: | XP_038938080 ⟸ XM_039082152 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q0VGK3 (UniProtKB/Swiss-Prot), A6I2P3 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_038938083 ⟸ XM_039082155 |
| - Peptide Label: | isoform X3 |
| RefSeq Acc Id: | XP_063122212 ⟸ XM_063266142 |
| - Peptide Label: | isoform X2 |
| RefSeq Acc Id: | XP_063122213 ⟸ XM_063266143 |
| - Peptide Label: | isoform X2 |
| RefSeq Acc Id: | XP_063122211 ⟸ XM_063266141 |
| - Peptide Label: | isoform X2 |
| Name | Modeler | Protein Id | AA Range | Protein Structure |
| AF-Q0VGK3-F1-model_v2 | AlphaFold | Q0VGK3 | 1-523 | view protein structure |
| eQTL | View at Phenogen | |
| WGCNA | View at Phenogen | |
| Tissue/Strain Expression | View at Phenogen |
| RGD ID: | 13696241 | ||||||||
| Promoter ID: | EPDNEW_R6766 | ||||||||
| Type: | multiple initiation site | ||||||||
| Name: | Glyctk_1 | ||||||||
| Description: | glycerate kinase | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1591498 | AgrOrtholog |
| BioCyc Gene | G2FUF-29256 | BioCyc |
| Ensembl Genes | ENSRNOG00000046307 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Transcript | ENSRNOT00000074595 | ENTREZGENE |
| ENSRNOT00000074595.2 | UniProtKB/Swiss-Prot | |
| Gene3D-CATH | 3.40.1480.10 | UniProtKB/Swiss-Prot |
| 3.40.50.10180 | UniProtKB/Swiss-Prot | |
| IMAGE_CLONE | IMAGE:7454021 | IMAGE-MGC_LOAD |
| InterPro | GK-like_C_sf | UniProtKB/Swiss-Prot |
| GK_N_sf | UniProtKB/Swiss-Prot | |
| MOFRL | UniProtKB/Swiss-Prot | |
| MOFRL_assoc_dom | UniProtKB/Swiss-Prot | |
| MOFRL_protein | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:684314 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:125019 | IMAGE-MGC_LOAD |
| NCBI Gene | 684314 | ENTREZGENE |
| PANTHER | GLYCERATE KINASE | UniProtKB/Swiss-Prot |
| PTHR12227 | UniProtKB/Swiss-Prot | |
| Pfam | DUF4147 | UniProtKB/Swiss-Prot |
| MOFRL | UniProtKB/Swiss-Prot | |
| PhenoGen | Glyctk | PhenoGen |
| RatGTEx | ENSRNOG00000046307 | RatGTEx |
| Superfamily-SCOP | GckA/TtuD-like | UniProtKB/Swiss-Prot |
| UniProt | A6I2P3 | ENTREZGENE, UniProtKB/TrEMBL |
| GLCTK_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2010-11-30 | Glyctk | glycerate kinase | LOC684314 | similar to CG9886-like | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2006-11-20 | LOC684314 | similar to CG9886-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL |