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Gene: Stam (signal transducing adaptor molecule) Rattus norvegicus

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Symbol:

Stam

Name:

signal transducing adaptor molecule

RGD ID:

1564499

Description:

Predicted to enable ubiquitin-like protein ligase binding activity. Predicted to be involved in positive regulation of exosomal secretion; protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; and regulation of extracellular exosome assembly. Predicted to be located in cytosol and early endosome membrane. Predicted to be part of ESCRT-0 complex. Orthologous to human STAM (signal transducing adaptor molecule); PARTICIPATES IN interleukin-2 signaling pathway; endocytosis pathway; Jak-Stat signaling pathway; INTERACTS WITH acrylamide; bisphenol A; Brodifacoum.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC498798; RGD1564499; signal transducing adapter molecule 1; signal transducing adaptor molecule (SH3 domain and ITAM motif) 1; similar to signal transducing adaptor - mouse

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STAM (signal transducing adaptor molecule)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Stam (signal transducing adaptor molecule (SH3 domain and ITAM motif) 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stam (signal transducing adaptor molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STAM (signal transducing adaptor molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STAM (signal transducing adaptor molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stam (signal transducing adaptor molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STAM (signal transducing adaptor molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STAM (signal transducing adaptor molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stam (signal transducing adaptor molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Stam (signal transducing adaptor molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	STAM (signal transducing adaptor molecule)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Stam (signal transducing adaptor molecule (SH3 domain and ITAM motif) 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stam (signal transducing adaptor molecule (SH3 domain and ITAM motif) 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HSE1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Stam	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Stam	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	stam-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	stam-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	stam	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	82,028,779 - 82,074,717 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	82,028,703 - 82,075,013 (+)	Ensembl				GRCr8
mRatBN7.2	17	77,120,235 - 77,166,173 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	77,120,158 - 77,166,467 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	80,570,551 - 80,615,048 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	84,405,965 - 84,450,462 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	78,453,865 - 78,498,362 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	81,209,795 - 81,256,111 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	81,209,867 - 81,255,808 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	82,954,327 - 83,002,657 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	88,276,082 - 88,321,955 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	76,453,145 - 76,499,077 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,6-dimethoxyphenol (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-diaminodiphenylmethane (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

AM-251 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

carmustine (ISO)

chlorpyrifos (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fluoranthene (ISO)

folic acid (ISO)

FR900359 (ISO)

furfural (ISO)

ivermectin (ISO)

methidathion (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

Salinomycin (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

temozolomide (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

tetracycline (ISO)

thioacetamide (EXP)

thiram (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

macroautophagy (IEA)

multivesicular body assembly (IEA)

positive regulation of exosomal secretion (IEA,ISO)

protein transport (IEA)

protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (IBA)

regulation of extracellular exosome assembly (IEA,ISO)

Cellular Component

cytoplasm (IEA)

early endosome membrane (IEA)

ESCRT-0 complex (IBA,IEA,ISO)

Molecular Function

phosphatidylinositol binding (IEA)

protein binding (IPI,ISO)

ubiquitin binding (IEA)

ubiquitin-like protein ligase binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

endocytosis pathway (IEA)

interleukin-2 signaling pathway (ISO)

Jak-Stat signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Interaction of the deafness-dystonia protein DDP/TIMM8a with the signal transduction adaptor molecule STAM1.	Blackstone C, etal., Biochem Biophys Res Commun 2003 May 30;305(2):345-52.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:22871113	PMID:24105262	PMID:24790097	PMID:28131823

Genomics

Comparative Map Data

Stam
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	82,028,779 - 82,074,717 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	82,028,703 - 82,075,013 (+)	Ensembl				GRCr8
mRatBN7.2	17	77,120,235 - 77,166,173 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	77,120,158 - 77,166,467 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	80,570,551 - 80,615,048 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	84,405,965 - 84,450,462 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	78,453,865 - 78,498,362 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	81,209,795 - 81,256,111 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	81,209,867 - 81,255,808 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	82,954,327 - 83,002,657 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	88,276,082 - 88,321,955 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	76,453,145 - 76,499,077 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

STAM
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	17,644,151 - 17,716,824 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	17,644,124 - 17,716,824 (+)	Ensembl			hg38	GRCh38
GRCh37	10	17,686,150 - 17,758,823 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	17,726,130 - 17,797,913 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	17,726,129 - 17,797,913	NCBI
Celera	10	17,619,602 - 17,691,384 (+)	NCBI		Celera
Cytogenetic Map	10	p12.33	NCBI
HuRef	10	17,598,859 - 17,671,557 (+)	NCBI		HuRef
CHM1_1	10	17,686,508 - 17,759,210 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	17,662,652 - 17,736,129 (+)	NCBI		T2T-CHM13v2.0

Stam
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	14,078,912 - 14,152,351 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	14,078,909 - 14,154,445 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	14,073,962 - 14,148,338 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	14,074,098 - 14,149,634 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	13,995,739 - 14,069,965 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	13,991,866 - 14,066,092 (+)	NCBI		MGSCv36	mm8
Celera	2	13,978,783 - 14,051,519 (+)	NCBI		Celera
Cytogenetic Map	2	A2	NCBI
cM Map	2	10.36	NCBI

Stam
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	10,306,957 - 10,366,081 (-)	Ensembl
ChiLan1.0	NW_004955429	10,306,957 - 10,366,072 (-)	NCBI	ChiLan1.0	ChiLan1.0

STAM
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	30,485,153 - 30,561,119 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	30,492,656 - 30,566,440 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	17,962,759 - 18,035,654 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	18,232,548 - 18,305,169 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	18,232,548 - 18,305,197 (+)	Ensembl			panPan2	panpan1.1

STAM
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	19,264,392 - 19,344,187 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	19,266,055 - 19,344,045 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	16,365,991 - 16,445,808 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	19,553,884 - 19,634,156 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	19,553,652 - 19,652,382 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	16,756,688 - 16,836,708 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	17,592,245 - 17,672,295 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	18,212,306 - 18,292,067 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	18,270,841 - 18,333,310 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936520	9,624,628 - 9,689,686 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936520	9,627,674 - 9,689,658 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STAM
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	43,947,011 - 44,016,056 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	43,946,990 - 44,016,064 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	48,632,911 - 48,699,716 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STAM
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	17,590,252 - 17,662,278 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	17,590,268 - 17,663,986 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666051	23,235,162 - 23,320,904 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stam
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624796	10,201,518 - 10,269,311 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624796	10,195,897 - 10,269,311 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Stam
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	9,477,867 - 9,524,083 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Stam
265 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	139
Count of miRNA genes:	117
Interacting mature miRNAs:	130
Transcripts:	ENSRNOT00000035634
Prediction methods:	Miranda, Pita
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	42388164	87388164	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	70613502	86062352	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	58194064	87388164	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	38031354	83031354	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	54829503	93515804	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	38031354	83031354	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	38031354	83031354	Rat
61466	Niddm12	Non-insulin dependent diabetes mellitus QTL 12	3.2	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	65154872	93515804	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	38031354	83031354	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	42388164	87388164	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	46050126	91050126	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	55604597	93006569	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	42654895	87654895	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	37687877	82687877	Rat
1300131	Bp193	Blood pressure QTL 193	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	68550040	93515804	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	63697147	82818564	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	64569820	86954580	Rat

Markers in Region

AU049126

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	77,127,042 - 77,127,213 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	81,216,675 - 81,216,845	NCBI	Rnor6.0
Rnor_5.0	17	82,961,135 - 82,961,305	UniSTS	Rnor5.0
RGSC_v3.4	17	88,282,890 - 88,283,060	UniSTS	RGSC3.4
Celera	17	76,459,955 - 76,460,125	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BF386478

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	77,166,242 - 77,166,400 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	81,255,878 - 81,256,035	NCBI	Rnor6.0
Rnor_5.0	17	83,002,424 - 83,002,581	UniSTS	Rnor5.0
RGSC_v3.4	17	88,322,025 - 88,322,182	UniSTS	RGSC3.4
Celera	17	76,499,147 - 76,499,304	UniSTS
RH 3.4 Map	17	795.6	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BE109742

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	77,165,643 - 77,165,797 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	81,255,279 - 81,255,432	NCBI	Rnor6.0
Rnor_5.0	17	83,001,825 - 83,001,978	UniSTS	Rnor5.0
RGSC_v3.4	17	88,321,426 - 88,321,579	UniSTS	RGSC3.4
Celera	17	76,498,548 - 76,498,701	UniSTS
RH 3.4 Map	9	868.5	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

RH141478

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	77,165,740 - 77,165,890 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	81,255,376 - 81,255,525	NCBI	Rnor6.0
Rnor_5.0	17	83,001,922 - 83,002,071	UniSTS	Rnor5.0
RGSC_v3.4	17	88,321,523 - 88,321,672	UniSTS	RGSC3.4
Celera	17	76,498,645 - 76,498,794	UniSTS
RH 3.4 Map	17	771.2	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000077368 ⟹ ENSRNOP00000075157

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	82,028,703 - 82,075,013 (+)	Ensembl
mRatBN7.2 Ensembl	17	77,120,158 - 77,166,467 (+)	Ensembl
Rnor_6.0 Ensembl	17	81,209,867 - 81,255,808 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087129 ⟹ ENSRNOP00000068837

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	77,132,843 - 77,166,467 (+)	Ensembl
Rnor_6.0 Ensembl	17	81,209,985 - 81,254,571 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119151 ⟹ ENSRNOP00000085119

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	82,029,054 - 82,074,050 (+)	Ensembl
mRatBN7.2 Ensembl	17	77,120,506 - 77,166,467 (+)	Ensembl

RefSeq Acc Id:

NM_001109121 ⟹ NP_001102591

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	82,028,779 - 82,074,717 (+)	NCBI
mRatBN7.2	17	77,120,235 - 77,166,173 (+)	NCBI
Rnor_6.0	17	81,209,867 - 81,255,808 (+)	NCBI
Rnor_5.0	17	82,954,327 - 83,002,657 (+)	NCBI
RGSC_v3.4	17	88,276,082 - 88,321,955 (+)	RGD
Celera	17	76,453,145 - 76,499,077 (+)	RGD

Sequence:

show sequence

CCTGCACTGGCAATCTCCCTTAGTGTTTTTGTACCTGAGGGGCCTCCTTTCTCCGTCACTTCTC
GAGTGCCGCGGTGTCGAGGGGCAGTCCCTGGGGACACCTCGGCACGCAGCGGACATGCCTCTCT
TTGCCACCAACCCCTTCGACCAGGATGTTGAGAAAGCAACCAGTGAGTTGAATACTGCTGAGGA
CTGGGGCCTCATCTTGGATATTTGTGATAAGGTTGGCCAATCTCGCACAGGACCTAAAGATTGT
CTTCGTTCTATTATGAGAAGAGTGAACCATAAAGACCCCCATGTTGCTATGCAGGCTTTAACTC
TTCTAGGAGCATGTGTATCAAACTGTGGCAAAATTTTTCACTTAGAAGTGTGTTCAAGGGATTT
CGCTAGCGAAGTAAGCAATGTGTTAAATAAGGGCCATCCTAAAGTATGTGAAAAATTAAAGGCT
CTTATGGTTGAATGGACAGATGAATTTAAGAATGACCCACAGCTAAGTCTGATATCGGCAATGA
TTAAGAACCTCAAGGAACAGGGTGTAACATTCCCAGCCATCGGCTCTCAGGCTGCAGAACAAGC
GAAAGCAAGCCCGGCTCTGGTAGCCAAGGACCCTGGCACTGTGGCTACCAAAAAGGAAGAAGAA
GATTTAGCCAAAGCTATTGAGTTGTCGCTCAAGGAGCAAAGGCAGCAGGCAGCCCCCCTCTCCA
CGTTGTACCCAAGCACATCCAGTCTCCTCACTAACCACCAACATGAAGGCAGGAAAGTCCGCGC
TGTGTATGACTTTGAGGCTGCAGAGGACAATGAGCTCACCTTTAAAGCTGGAGAGGTCATCACA
GTGCTTGACGACAGTGATCCCAACTGGTGGAAAGGTGAAACACATCAAGGCATGGGGCTTTTTC
CTTCTAATTTTGTAACTGCAGATCTTACTGCTGAACCGGAAATGATTAAGACAGAGAAGAAGAC
GGTACAATTCAGTGACGATGTTCAGATAGAGACAATAGAACCAGAACCAGAACCGGAACCAGCC
TTCATTGATGAGGATAAAATGGACCAGTTGCTACAGATGTTGCAAAGTACAGATCCCAGCGATA
ATCAGCCAGACTTACCAGAGCTACTTCATCTCGAAGCGATGTGTCACCAGATGGGACCTCTCAT
TGATGAAAAGCTGGAGGACATCGATAGAAAACACTCAGAACTCTCAGAACTGAATGTGAAGGTG
ATGGAGGCTCTCTCACTGTATACGAAGCTAATGAATGAAGACCCAGTGTACTCTGTGTACGCCA
AGTCCCAGAGTCAGCAGTACTATGTGCAGGCCTCTGGTGTGTCCGCTCCCCAGGTATACCCAGG
GCCTGCTCAGAGCGGAGCCTATCTGGTTGCAGGGAATGCCCAGATGACCCATCTCCAGAGCTAC
AGCCTTCCCCCGGAGCAGCTGGCTTCCATCAGCCAAGGAGCAGTTCCTCCCTCTGCAACCCCAG
CCCTTCCTAATCAGCAGGCCCAGGCTTCTTACCCGAATGCAATGGTTAGTTCTGTTCAAGGAAA
TTCGTATCCCAGCCAGGCTTCAATATACAGTCCTGCTGCTGCTGCTGCCGCTGTCGCTGTCACT
GCAGTGCCTGTGCCTGCTGATGTCACCATCTACCAGAATCCAGGACCTAACATGTCCCAGGTGC
CAAACTATACCTTAACGTCATCGACCCTGCCTCACACAGGAGGCAGCCAACAGCCACCTCAGCC
ACAGCAAGCATATTCTCAGAAGGCTCTGCTATAGGACTTGATGCTGCTCTGGGTGGCCTATTTC
TGCTGAGTGCCACTGACAGTGTTAGGAAATTCATTAACATCCTAAGATTTGTTTTCCTCAGCTT
GTGAGAGTCTATCTTGGTCAAGTTCAAATACTCAAGAAGGTAGAACTGCTTCAGTTTGCACTGA
CTTTTTAGAGGAATGCTCCTCCCCCGAGGAATGAAACTACTTACAACATTTATTTCCTTTCATG
ATATGAAGAATTGTTACAAGATTATTGTCTTGTAAAATTACCTGGTCTGCAGCACTCAAATGAT
CAGAAACTGCTGTGGCAAATGTTATGTACATATATTGACATGTAACTTCCTTAGCGACCTTTGA
ATTACAGTGGTGGTCATGTGAATATATTTAACACTGTTAAATTAATTTACATTGTTTTATTTTA
ATCATGAACAACTATGTTTGCTAATGTTTTGTGTAAATTTAAGATAAGTACACTATCTTTTTAA
GCTACAAGAGAAGCAACTCGTAGCACATTGACCTGAAGGCATTGTCCTGTTATCGTGTCACATT
AAATTGAACCTTTCTTTTACTAATTGTGAACAAAACATGTACGTTGTATCTTTGTGTAGCTTCT
GCCCACTGGTTGTCATCACACCAGCATACAGTAGCCACATTTTGGTGCAATTAGAGGAGAATAA
TGTTCCCTTTAACCCTTTATATTTTGGCATGATGTTCCAGGTATTGTGGACCATGAGACAAAAA
TTAGTCCTTGTATTTTATTTTGAAAAAGGTGACGTTGATTTACTTTTTCCTAGTTAGTGTGATT
AGGTTTTAAAGCCGTGTACTGTGTTTATTGGTAGCAGTGACACCAAAGACAGAGACGATGCACA
CGGGGATCGTTCAGTGGGCAGCGATGAACTAACACTACAATGTCAAAGTCTCTTGTAAAGCGTA
CGCTATAAACAAGATCTGATTCTCCTGTCTTACCCCACTAGGTTTTTTTTTAATGTTGTTGACA
CATTGTATCTTTTAATTCTCATTAAAATGGATATAAATAGGTGTTTCAAAGTAATTTATATTCT
GATTTTGTTTAATAGTGTATATATTTATTGTTGCTACAAACTGGAGTCTAAGTTTTTCCCTCTT
TGTCTCACTTGAAGTTCTAATAGAATTATTTTTGCTTATTTAGGAGTAACTTTAATGAATTATT
GTAATTCATATAAAAATTCCATTGATATTTTAGTCATAAATATTTACAATTCCAAAAAAAAAAA
AAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017600651 ⟹ XP_017456140

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	82,028,949 - 82,074,717 (+)	NCBI
mRatBN7.2	17	77,120,510 - 77,166,173 (+)	NCBI
Rnor_6.0	17	81,210,037 - 81,256,111 (+)	NCBI

Sequence:

show sequence

ACCGCCCCCTGTGAGTGCCCTCAACCCCCGAGACCACGAGCCCACGCCGCCCACTCTCTCCCTG
CGTTCGTTCATTCTAAATTCCCAAGGCCGAGCCCACGTTCTTCTCTCCCGGGGCCCCTTGGTTC
AGAGTTGGGAGAAGGTTGAGCGCTTGGCGCATCCTCTTTGAAAGAAATGGGACTTAGAACCTCT
CCAATGGGCCTTGGTAAGGGACTTGGGGAGGGGGAGCTTTGATGGGATCGCTTAAGGGATTTGG
GGTAAAGGGTTGCCTCGGGAGGAACAGACGACGAAACCATCTGCCGCTGGAGCTTGACTTCTGG
GAGAAGTGCGAAGGGCTTGAGCAGATTGATTATAAGCTGTGTCGCCAAAGTGTTTGTCTGGCCC
AATGGAAAGCGTCAGGAACTGGCAAAATGTTTTAGAGAAAGCAACCAGTGAGTTGAATACTGCT
GAGGACTGGGGCCTCATCTTGGATATTTGTGATAAGGTTGGCCAATCTCGCACAGGAGCCTAAA
GATTGTCTTCGTTCTATTATGAGAAGAGTGAACCATAAAGACCCCCATGTTGCTATGCAGGCTT
TAACTCTTCTAGGAGCATGTGTATCAAACTGTGGCAAAATTTTTCACTTAGAAGTGTGTTCAAG
GGATTTCGCTAGCGAAGTAAGCAATGTGTTAAATAAGGGCCATCCTAAAGTATGTGAAAAATTA
AAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGACCCACAGCTAAGTCTGATATCGG
CAATGATTAAGAACCTCAAGGAACAGGGTGTAACATTCCCAGCCATCGGCTCTCAGGCTGCAGA
ACAAGCGAAAGCAAGCCCGGCTCTGGTAGCCAAGGACCCTGGCACTGTGGCTACCAAAAAGGAA
GAAGAAGATTTAGCCAAAGCTATTGAGTTGTCGCTCAAGGAGCAAAGGCAGCAGGCAGCCCCCC
TCTCCACGTTGTACCCAAGCACATCCAGTCTCCTCACTAACCACCAACATGAAGGCAGGAAAGT
CCGCGCTGTGTATGACTTTGAGGCTGCAGAGGACAATGAGCTCACCTTTAAAGCTGGAGAGGTC
ATCACAGTGCTTGACGACAGTGATCCCAACTGGTGGAAAGGTGAAACACATCAAGGCATGGGGC
TTTTTCCTTCTAATTTTGTAACTGCAGATCTTACTGCTGAACCGGAAATGATTAAGACAGAGAA
GAAGACGGTACAATTCAGTGACGATGTTCAGATAGAGACAATAGAACCAGAACCAGAACCGGAA
CCAGCCTTCATTGATGAGGATAAAATGGACCAGTTGCTACAGATGTTGCAAAGTACAGATCCCA
GCGATAATCAGCCAGACTTACCAGAGCTACTTCATCTCGAAGCGATGTGTCACCAGATGGGACC
TCTCATTGATGAAAAGCTGGAGGACATCGATAGAAAACACTCAGAACTCTCAGAACTGAATGTG
AAGGTGATGGAGGCTCTCTCACTGTATACGAAGCTAATGAATGAAGACCCAGTGTACTCTGTGT
ACGCCAAGTCCCAGAGTCAGCAGTACTATGTGCAGGCCTCTGGTGTGTCCGCTCCCCAGGTATA
CCCAGGGCCTGCTCAGAGCGGAGCCTATCTGGTTGCAGGGAATGCCCAGATGACCCATCTCCAG
AGCTACAGCCTTCCCCCGGAGCAGCTGGCTTCCATCAGCCAAGGAGCAGTTCCTCCCTCTGCAA
CCCCAGCCCTTCCTAATCAGCAGGCCCAGGCTTCTTACCCGAATGCAATGGTTAGTTCTGTTCA
AGGAAATTCGTATCCCAGCCAGGCTTCAATATACAGTCCTGCTGCTGCTGCTGCCGCTGTCGCT
GTCACTGCAGTGCCTGTGCCTGCTGATGTCACCATCTACCAGAATCCAGGACCTAACATGTCCC
AGGTGCCAAACTATACCTTAACGTCATCGACCCTGCCTCACACAGGAGGCAGCCAACAGCCACC
TCAGCCACAGCAAGCATATTCTCAGAAGGCTCTGCTATAGGACTTGATGCTGCTCTGGGTGGCC
TATTTCTGCTGAGTGCCACTGACAGTGTTAGGAAATTCATTAACATCCTAAGATTTGTTTTCCT
CAGCTTGTGAGAGTCTATCTGTGGTGCAAGTTCAAATACTCAAGAAGGTAGAACTGCTTCAGTT
TGCACTGACTTTTTAGAGGAATGCTCCTCCCCCGAGGAATGAAACTACTTACAACATTTATTTC
CTTTCATGATATGAAGAATTGTTACAAGATTATTGTCTTGTAAAATTACCTGGTCTGCAGCACT
CAAATGATCAGAAACTGCTGTGGCAAATGTTATGTACATATATTGACATGTAACTTCCTTAGCG
ACCTTTGAATTACAGTGGTGGTCATGTGAATATATTTAACACTGTTAAATTAATTTACATTGTT
TTATTTTAATCATGAACAACTATGTTTGCTAATGTTTTGTGTAAATTTAAGATAAGTACACTAT
CTTTTTAAGCTACAAGAGAAGCAACTCGTAGCACATTGACCTGAAGGCATTGTCCTGTTATCGT
GTCACATTAAATTGAACCTTTCTTTTACTAATTGTGAACAAAACATGTACGTTGTATCTTTGTG
TAGCTTCTGCCCACTGGTTGTCATCACACCAGCATACAGTAGCCACATTTTGGTGCAATTAGAG
GAGAATAATGTTCCCTTTAACCCTTTATATTTTGGCATGATGTTCCAGGTATTGTGGACCATGA
GACAAAAATTAGTCCTTGTATTTTATTTTGAAAAAGGTGACGTTGATTTACTTTTTCCTAGTTA
GTGTGATTAGGTTTTAAAGCCGTGTACTGTGTTTATTGGTAGCAGTGACACCAAAGACAGAGAC
GATGCACACGGGGATCGTTCAGTGGGCAGCGATGAACTAACACTACAATGTCAAAGTCTCTTGT
AAAGCGTACGCTATAAACAAGATCTGATTCTCCTGTCTTACCCCACTAGGTTTTTTTTTAATGT
TGTTGACACATTGTATCTTTTAATTCTCATTAAAATGGATATAAATAGGTGTTTCAAAGTAATT
TATATTCTGATTTTGTTTAATAGTGTATATATTTATTGTTGCTACAAACTGGAGTCTAAGTTTT
TCCCTCTTTGTCTCACTTGAAGTTCTAATAGAATTATTTTTGCTTATTTAGGAGTAACTTTAAT
GAATTATTGTAATTCATATAAAAATTCCATTGATATTTTAGTCATAAATATTTACAATTCCCCT
GGTTGTGCTATCCTGTTATTTAAATAACCTAGAATTTGCGTATCATACTCACTAGAACTGAGCA
TCCCTCCTGTGAGTGCATGATAGCTTTGCATTGCTGACTTGTCCTCCTTCTGACAAATGCCTTC
CGCTTTGGCGAATAGTCTGAGGGTGACTAACTCAGATCATATCTACAGCTCCTTCACTCGTAAG
TTTACTTGAGTTTAAAGTGTGTCACCATCAAATAGTAATGTTTAGATTTTAATTCAGCTGTCAC
ATTTTAAGTTTTTTAATAAAACCTCATAAGCAGTTAGATTATAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102591	(Get FASTA)	NCBI Sequence Viewer
	XP_017456140	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68933	(Get FASTA)	NCBI Sequence Viewer
	EDL78731	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000075157
	ENSRNOP00000075157.1
	ENSRNOP00000085119
	ENSRNOP00000085119.1

RefSeq Acc Id:

NP_001102591 ⟸ NM_001109121

- UniProtKB:

B5DF55 (UniProtKB/TrEMBL), A0A0G2K9W6 (UniProtKB/TrEMBL), A0A0G2JTT5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPLFATNPFDQDVEKATSELNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQ
ALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLI
SAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVATKKEEEDLAKAIELSLKEQRQQAA
PLSTLYPSTSSLLTNHQHEGRKVRAVYDFEAAEDNELTFKAGEVITVLDDSDPNWWKGETHQGM
GLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQIETIEPEPEPEPAFIDEDKMDQLLQMLQSTD
PSDNQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSELNVKVMEALSLYTKLMNEDPVYS
VYAKSQSQQYYVQASGVSAPQVYPGPAQSGAYLVAGNAQMTHLQSYSLPPEQLASISQGAVPPS
ATPALPNQQAQASYPNAMVSSVQGNSYPSQASIYSPAAAAAAVAVTAVPVPADVTIYQNPGPNM
SQVPNYTLTSSTLPHTGGSQQPPQPQQAYSQKALL

hide sequence

RefSeq Acc Id:	XP_017456140 ⟸ XM_017600651
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A2K6 (UniProtKB/TrEMBL), A0A0G2JTT5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVE WTDEFKNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVATKKEEEDLAK AIELSLKEQRQQAAPLSTLYPSTSSLLTNHQHEGRKVRAVYDFEAAEDNELTFKAGEVITVLDD SDPNWWKGETHQGMGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQIETIEPEPEPEPAFIDE DKMDQLLQMLQSTDPSDNQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSELNVKVMEAL SLYTKLMNEDPVYSVYAKSQSQQYYVQASGVSAPQVYPGPAQSGAYLVAGNAQMTHLQSYSLPP EQLASISQGAVPPSATPALPNQQAQASYPNAMVSSVQGNSYPSQASIYSPAAAAAAVAVTAVPV PADVTIYQNPGPNMSQVPNYTLTSSTLPHTGGSQQPPQPQQAYSQKALL hide sequence

Ensembl Acc Id:

ENSRNOP00000075157 ⟸ ENSRNOT00000077368

Ensembl Acc Id:

ENSRNOP00000068837 ⟸ ENSRNOT00000087129

Ensembl Acc Id:

ENSRNOP00000085119 ⟸ ENSRNOT00000119151

Protein Domains

SH3 VHS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DF55-F1-model_v2	AlphaFold	B5DF55	1-547	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700598

Promoter ID:

EPDNEW_R11121

Type:

initiation region

Name:

Stam_1

Description:

signal transducing adaptor molecule

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	81,209,792 - 81,209,852	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564499	AgrOrtholog
BioCyc Gene	G2FUF-8604	BioCyc
Ensembl Genes	ENSRNOG00000060817	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077368	ENTREZGENE
	ENSRNOT00000077368.3	UniProtKB/TrEMBL
	ENSRNOT00000119151	ENTREZGENE
	ENSRNOT00000119151.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.1940	UniProtKB/TrEMBL
	1.25.40.90	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	ENTH_VHS	UniProtKB/TrEMBL
	GAT_STAM1	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
	STAM	UniProtKB/TrEMBL
	STAM1_SH3	UniProtKB/TrEMBL
	Ubiquitin-int_motif	UniProtKB/TrEMBL
	VHS	UniProtKB/TrEMBL
	VHS_STAM1	UniProtKB/TrEMBL
KEGG Report	rno:498798	UniProtKB/TrEMBL
NCBI Gene	498798	ENTREZGENE
PANTHER	JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE	UniProtKB/TrEMBL
	SIGNAL TRANSDUCING ADAPTER MOLECULE 1	UniProtKB/TrEMBL
Pfam	SH3_1	UniProtKB/TrEMBL
	UIM	UniProtKB/TrEMBL
	VHS	UniProtKB/TrEMBL
PhenoGen	Stam	PhenoGen
PRINTS	P67PHOX	UniProtKB/TrEMBL
	SH3DOMAIN	UniProtKB/TrEMBL
PROSITE	SH3	UniProtKB/TrEMBL
	UIM	UniProtKB/TrEMBL
	VHS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000060817	RatGTEx
SMART	SH3	UniProtKB/TrEMBL
	VHS	UniProtKB/TrEMBL
Superfamily-SCOP	ENTH_VHS	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
UniProt	A0A0G2JTT5	ENTREZGENE
	A0A0G2K9W6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A2K6	ENTREZGENE, UniProtKB/TrEMBL
	B5DF55	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Stam	signal transducing adaptor molecule	Stam	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Stam	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	RGD1564499_predicted	similar to signal transducing adaptor - mouse (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564499_predicted	similar to signal transducing adaptor - mouse (predicted)	LOC498798	similar to signal transducing adaptor - mouse	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498798	similar to signal transducing adaptor - mouse			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)