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Gene: Wasf1 (WASP family member 1) Rattus norvegicus

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Symbol:

Wasf1

Name:

WASP family member 1

RGD ID:

1561954

Description:

Predicted to enable Arp2/3 complex binding activity and protein kinase A regulatory subunit binding activity. Predicted to contribute to small GTPase binding activity. Involved in dendritic transport of mitochondrion. Predicted to be located in mitochondrial outer membrane. Predicted to be part of SCAR complex. Predicted to be active in lamellipodium and postsynapse. Orthologous to human WASF1 (WASP family member 1); PARTICIPATES IN Fc gamma receptor mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amitrole; benzo[a]pyrene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

actin-binding protein WASF1; MGC109303; protein WAVE-1; WAS protein family, member 1; WASP family 1; WASP family protein member 1; wiskott-Aldrich syndrome protein family member 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WASF1 (WASP family member 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Wasf1 (WASP family, member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Wasf1 (WASP family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WASF1 (WASP family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WASF1 (WASP family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wasf1 (WASP family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WASF1 (WASP family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WASF1 (WASP family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wasf1 (WASP family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Wasf1 (WASP family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ZNF346 (zinc finger protein 346)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	WASF1 (WASP family member 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Wasf1 (WASP family, member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	wasf1 (WAS protein family, member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	SCAR	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	wve-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	wve-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	wasf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	wasf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	45,908,458 - 45,956,118 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	45,908,750 - 45,955,640 (+)	Ensembl				GRCr8
mRatBN7.2	20	44,325,815 - 44,372,999 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	44,325,795 - 44,372,996 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	46,110,330 - 46,157,484 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	45,769,485 - 45,816,639 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	46,492,179 - 46,541,494 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	48,456,191 - 48,503,768 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	48,455,705 - 48,503,898 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	50,107,711 - 50,155,913 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	20	45,130,786 - 45,177,385 (+)	NCBI		Celera
Cytogenetic Map	20	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

generalized epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

NEURODEVELOPMENTAL DISORDER WITH ABSENT LANGUAGE AND VARIABLE SEIZURES (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

benzo[a]pyrene (EXP,ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

clobetasol (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fipronil (EXP)

FR900359 (ISO)

gallic acid (ISO)

hydrogen peroxide (ISO)

inulin (ISO)

ivermectin (ISO)

methoxychlor (EXP)

methylseleninic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IBA,IEA,ISO,ISS)

cellular response to brain-derived neurotrophic factor stimulus (IEA,ISO,ISS)

dendrite extension (IEA,ISO)

dendritic transport of mitochondrion (IDA,IMP)

lamellipodium morphogenesis (IEA,ISO,ISS)

mitochondrion organization (IEA,ISO,ISS)

modification of postsynaptic actin cytoskeleton (IEA,ISO)

neuron projection development (IEA,ISO)

positive regulation of Arp2/3 complex-mediated actin nucleation (IBA,IEA,ISO)

positive regulation of neurotrophin TRK receptor signaling pathway (IEA,ISO)

Rac protein signal transduction (IEA,ISO)

receptor-mediated endocytosis (IEA,ISO,ISS)

Cellular Component

cytoplasm (IEA,ISO)

cytoskeleton (IEA)

dendrite cytoplasm (IEA)

focal adhesion (IEA)

lamellipodium (IBA,IEA,ISO)

mitochondrial outer membrane (IEA,ISO)

mitochondrion (IEA,ISO)

postsynapse (IEA,ISO)

protein-containing complex (IEA,ISO)

SCAR complex (IBA,IEA,ISO)

synapse (IEA)

Molecular Function

actin binding (IEA)

Arp2/3 complex binding (IBA)

protein binding (IPI,ISO)

protein kinase A binding (IEA,ISO)

protein kinase A regulatory subunit binding (IBA)

small GTPase binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Fc gamma receptor mediated signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Identification and characterization of a G-protein regulatory motif in WAVE1.	Song KS, etal., FEBS Lett. 2006 Apr 3;580(8):1993-8. Epub 2006 Mar 6.
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
6.	WAVE1 controls neuronal activity-induced mitochondrial distribution in dendritic spines.	Sung JY, etal., Proc Natl Acad Sci U S A. 2008 Feb 26;105(8):3112-6. doi: 10.1073/pnas.0712180105. Epub 2008 Feb 14.

Additional References at PubMed

PMID:10970852	PMID:12931191	PMID:15148305	PMID:16190876	PMID:16723544	PMID:16862120	PMID:17664349	PMID:19460862	PMID:21107423	PMID:22871113	PMID:25097019	PMID:27605705
PMID:28131823	PMID:29961568	PMID:30053369

Genomics

Comparative Map Data

Wasf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	45,908,458 - 45,956,118 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	45,908,750 - 45,955,640 (+)	Ensembl				GRCr8
mRatBN7.2	20	44,325,815 - 44,372,999 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	44,325,795 - 44,372,996 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	46,110,330 - 46,157,484 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	45,769,485 - 45,816,639 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	46,492,179 - 46,541,494 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	48,456,191 - 48,503,768 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	48,455,705 - 48,503,898 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	50,107,711 - 50,155,913 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	20	45,130,786 - 45,177,385 (+)	NCBI		Celera
Cytogenetic Map	20	q12	NCBI

WASF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	110,099,819 - 110,179,670 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	110,099,817 - 110,180,019 (-)	Ensembl			hg38	GRCh38
GRCh37	6	110,421,022 - 110,500,873 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	110,527,715 - 110,607,900 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	110,527,714 - 110,606,609	NCBI
Celera	6	111,167,684 - 111,247,873 (-)	NCBI		Celera
Cytogenetic Map	6	q21	NCBI
HuRef	6	107,987,658 - 108,067,845 (-)	NCBI		HuRef
CHM1_1	6	110,684,246 - 110,764,410 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	111,278,252 - 111,358,111 (-)	NCBI		T2T-CHM13v2.0

Wasf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	40,759,476 - 40,814,565 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	40,759,471 - 40,814,566 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	40,883,480 - 40,938,569 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	40,883,475 - 40,938,570 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	40,603,340 - 40,658,375 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	40,571,988 - 40,626,982 (+)	NCBI		MGSCv36	mm8
Celera	10	41,779,631 - 41,834,540 (+)	NCBI		Celera
Cytogenetic Map	10	B1	NCBI
cM Map	10	22.07	NCBI

Wasf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	34,889,566 - 34,965,769 (-)	Ensembl
ChiLan1.0	NW_004955411	34,893,287 - 34,966,670 (-)	NCBI	ChiLan1.0	ChiLan1.0

WASF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	130,117,370 - 130,204,116 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	128,003,292 - 128,090,041 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	107,911,751 - 107,988,821 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	111,951,725 - 112,058,554 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	111,951,726 - 111,979,329 (-)	Ensembl			panPan2	panpan1.1

WASF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	66,833,776 - 66,897,500 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	66,833,995 - 66,897,483 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	66,653,278 - 66,717,426 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	67,717,606 - 67,781,968 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	67,717,613 - 67,781,602 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	67,069,337 - 67,133,320 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	66,915,644 - 66,979,778 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	67,187,405 - 67,251,555 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Wasf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	101,761,273 - 101,821,206 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936564	6,036,135 - 6,095,710 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936564	6,036,135 - 6,096,046 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WASF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	1	76,107,595 - 76,180,335 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	85,590,358 - 85,660,191 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WASF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	63,718,784 - 63,793,024 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	63,718,737 - 63,793,151 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	36,004,710 - 36,077,937 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wasf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624916	1,181,234 - 1,201,975 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624916	1,183,291 - 1,301,925 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Wasf1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	40,631,033 - 40,681,879 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Wasf1
315 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	64
Count of miRNA genes:	60
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000073091
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat
70158	Bp60	Blood pressure QTL 60	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	32156967	45978663	Rat

Markers in Region

1634

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	44,372,756 - 44,372,845 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	48,456,345 - 48,456,433	NCBI	Rnor6.0
Rnor_5.0	20	50,107,865 - 50,107,953	UniSTS	Rnor5.0
Celera	20	45,177,143 - 45,177,231	UniSTS

RH134288

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	44,372,644 - 44,372,854 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	48,456,336 - 48,456,545	NCBI	Rnor6.0
Rnor_5.0	20	50,107,856 - 50,108,065	UniSTS	Rnor5.0
Celera	20	45,177,031 - 45,177,240	UniSTS
RH 3.4 Map	20	479.9	UniSTS

RH144530

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	44,367,716 - 44,368,014 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	48,461,175 - 48,461,472	NCBI	Rnor6.0
Rnor_5.0	20	50,112,695 - 50,112,992	UniSTS	Rnor5.0
Celera	20	45,172,104 - 45,172,401	UniSTS
RH 3.4 Map	20	478.4	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	11	62	162	91	89	59	68	59	6	325	163	11	141	81	92	30	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000073091 ⟹ ENSRNOP00000064342

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	45,908,750 - 45,955,640 (+)	Ensembl
mRatBN7.2 Ensembl	20	44,325,795 - 44,372,996 (+)	Ensembl
Rnor_6.0 Ensembl	20	48,455,705 - 48,503,898 (-)	Ensembl

RefSeq Acc Id:

NM_001025114 ⟹ NP_001020285

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	45,908,458 - 45,955,641 (+)	NCBI
mRatBN7.2	20	44,325,815 - 44,372,999 (+)	NCBI
Rnor_6.0	20	48,456,191 - 48,503,768 (-)	NCBI
Rnor_5.0	20	50,107,711 - 50,155,913 (-)	NCBI
Celera	20	45,130,786 - 45,177,385 (+)	RGD

Sequence:

show sequence

GCCTCAGGACAGGGGGAAGCGCCGTCCTCTAGCCCACGGACCGGTGAGCTGGCACAGCGGCTGA
GCTCAAGATGCCGCTGGTGAAAAGAAACATCGACCCTAGGCACTTGTGCCACACAGCACTGCCC
AGGGGCATTAAGAACGAGCTGGAATGTGTGACCAACATCTCCCTGGCAAATATAATTAGACAAC
TGAGTAGCCTAAGTAAATATGCTGAAGACATATTTGGAGAATTATTCAATGAAGCACATAGTTT
TTCCTTCAGAGTTAACTCATTACAAGAGCGCGTGGACCGATTGTCCGTTAGTGTCACACAGCTT
GATCCTAAAGAAGAAGAACTGTCCTTACAAGACATAACGATGAGAAAAGCTTTCCGGAGCTCTA
CAATTCAGGACCAGCAGCTTTTCGACCGCAAGACTTTGCCTATCCCGCTGCAGGAAACGTACGA
TGTGTGCGAGCAGCCTCCGCCTCTCAATGTCCTCACACCCTACAGGGACGATGGTAAGGAGGGG
CTGAAGTTTTATACCAACCCTTCGTATTTCTTTGATCTGTGGAAAGAAAAGATGTTGCAAGATA
CAGAGGATAAGAGGAAGGAAAAGAGAAAGCAGAAGCAGAAAAATCTAGACCGTCCTCATGAACC
AGAAAAAGTGCCAAGAGCACCACATGACAGGCGGCGAGAATGGCAGAAGCTGGCCCAAGGTCCA
GAGCTGGCTGAAGATGATGCCGATCTCCTCCACAAGCACATCGAAGTTGCTAACGGCCCAGCCT
CTCATTTTGAGACAAGGCCGCAGACATACGTGGACCACATGGATGGATCTTACTCACTCTCTGC
CTTGCCATTCAGTCAGATGAGTGAACTCCTAAGCAGAGCTGAGGAGAGGGTCTTAGTCAGACCC
CATGAACCACCTCCACCTCCACCAATGCATGCAGCAGGGGATGCAAGACCCACCCCCACCTGTG
TCAGCTCTGCTGCGGGTTTGATAGAGAATCGTCCCCAGTCCCCAGCTGCAGGCAGAACACCCGT
GTTTGTGAGCCCCACGCCCCCACCTCCTCCACCACCTCTCCCGTCTGCCCTGTCCACCTCCTCA
CTGAGAGCTTCCATGACCTCAACTCCTCCCCCACCGGTGCCTCCCCCGCCTCCTCCTCCAGCCC
CTGCCTTGCAGGCCCCAGCAGTGCCCCCGCCTCCAGCCCCTCTTCAGATTGCCCCTGGTGTCCT
TCACCCAGCTCCTCCTCCAATCGCTCCTCCTCTAGTACAGCCCTCTCCCCCGGTAGCCAGAGCC
GCCCCAGTGTGTGAGACTGTACCCGTTCATCCACTCCCACAAGGTGAAGTGCAGGGGCTGCCTC
CGCCCCCGCCGCCGCCGCCTCTGCCTCCTCCAGGCATTCGGCCATCATCACCTGTCACGGTCGC
AGCTCTTGCGCATCCTCCCTCTGGGCTCCACCCAACTCCATCTCCTGCCCCTGGTCCCCATGCT
CCATTAATGCCTCCGTCCCCACCTTCACAAGTCCTGCCTGCCTCTGAGCCAAAGCGCCATCCTT
CCACCCTACCCGTGATCAGTGACGCGAGGAGTGTGCTGCTGGAGGCCATACGGAAAGGCATTCA
GCTTCGCAAAGTGGAAGAGCAGCGTGAACAGGAAGCAAAGCATGAGCGGATTGAAAACGACGTG
GCCACCATCCTGTCACGCCGCATCGCTGTGGAGTACAGCGACTCGGAAGACGACTCGGAGTTCG
ATGAAGTAGACTGGCTGGAGTGAGAGGGCCGAGTCGCCGTGGACGACTCGGAGTTCGATGAAGT
AGACTGGCTTGAGTGAGAGGGCCACGTCGCTCCGTGTTGCAAGGCTGAATGCACATGTCCTCTG
TGGCGCTTGATCTTTGAAAATGTTCGGTCATTCTAGTGTTTTGCTTCCTATTCCCCATGATGAA
TAACCCTTCTCCATAATTTTTGATTTCTATGAGAAGTATTAGCATATATTTCAAACTAAATATT
TCACAGTGGCTTATCTTCATCCCCCCCACCCCGGAAAATATAATTTGGCCCAATAAACTACTAA
GTATTAAGCATGGACAGCAGTTATTAGAGTAGCAGATTCAGTTTTTGATAGACCTTAATTGTGC
ACTTTGTGATGTTTTTTTCTTTTAAATTTGAAGAACACAACCGAGAATGGAATCTTGAAGGCAG
CTCTGTCCGTGGTTGAGCCTTATTCCGTTTCTTGATGTTCTCAATGAAGACACACTGCCTCGAT
TACCCGAACGCACTCAGAAAGAACATGTAGCTTGTAGTGTTGGATTCTCTTAAAGGAGTGGTTA
GTTTTTGTTACCATTTTATTGTTTTTAAATACTTGCCTTATTTGAACGTTTAGCAGAACCCTTC
CCCACTTATCTATTGTGTGGTACAGTTTTGCTTGCCTATAGAAGTTTAAATTTTTCCATGTGAG
ATACTCAGAATAAGCATACGTGTAACTTACATAATGTGAGAATTACAATCTGATGTAATAAACG
GTTCATTTTAAAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256586 ⟹ XP_006256648

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	45,908,827 - 45,956,118 (+)	NCBI
mRatBN7.2	20	44,326,101 - 44,372,999 (+)	NCBI
Rnor_6.0	20	48,456,191 - 48,503,417 (-)	NCBI
Rnor_5.0	20	50,107,711 - 50,155,913 (-)	NCBI

Sequence:

show sequence

CGGCCCGGCGCCTCAGCCAGTGCCCGGCGCGGCTTCCATCCCGCAGCCCGACGCTCCCGAGGGG
CTCTTGGTGGCGTCCCAGCGCGGAGCTGGACGGGCGGCAGCCGCCGAAGCATGTAGAAGGGGTA
CGGCGCGAGCCCCCCACGGTTTCGCGGTGAGCTGGCACAGCGGCTGAGCTCAAGATGCCGCTGG
TGAAAAGAAACATCGACCCTAGGCACTTGTGCCACACAGCACTGCCCAGGGGCATTAAGAACGA
GCTGGAATGTGTGACCAACATCTCCCTGGCAAATATAATTAGACAACTGAGTAGCCTAAGTAAA
TATGCTGAAGACATATTTGGAGAATTATTCAATGAAGCACATAGTTTTTCCTTCAGAGTTAACT
CATTACAAGAGCGCGTGGACCGATTGTCCGTTAGTGTCACACAGCTTGATCCTAAAGAAGAAGA
ACTGTCCTTACAAGACATAACGATGAGAAAAGCTTTCCGGAGCTCTACAATTCAGGACCAGCAG
CTTTTCGACCGCAAGACTTTGCCTATCCCGCTGCAGGAAACGTACGATGTGTGCGAGCAGCCTC
CGCCTCTCAATGTCCTCACACCCTACAGGGACGATGGTAAGGAGGGGCTGAAGTTTTATACCAA
CCCTTCGTATTTCTTTGATCTGTGGAAAGAAAAGATGTTGCAAGATACAGAGGATAAGAGGAAG
GAAAAGAGAAAGCAGAAGCAGAAAAATCTAGACCGTCCTCATGAACCAGAAAAAGTGCCAAGAG
CACCACATGACAGGCGGCGAGAATGGCAGAAGCTGGCCCAAGGTCCAGAGCTGGCTGAAGATGA
TGCCGATCTCCTCCACAAGCACATCGAAGTTGCTAACGGCCCAGCCTCTCATTTTGAGACAAGG
CCGCAGACATACGTGGACCACATGGATGGATCTTACTCACTCTCTGCCTTGCCATTCAGTCAGA
TGAGTGAACTCCTAAGCAGAGCTGAGGAGAGGGTCTTAGTCAGACCCCATGAACCACCTCCACC
TCCACCAATGCATGCAGCAGGGGATGCAAGACCCACCCCCACCTGTGTCAGCTCTGCTGCGGGT
TTGATAGAGAATCGTCCCCAGTCCCCAGCTGCAGGCAGAACACCCGTGTTTGTGAGCCCCACGC
CCCCACCTCCTCCACCACCTCTCCCGTCTGCCCTGTCCACCTCCTCACTGAGAGCTTCCATGAC
CTCAACTCCTCCCCCACCGGTGCCTCCCCCGCCTCCTCCTCCAGCCCCTGCCTTGCAGGCCCCA
GCAGTGCCCCCGCCTCCAGCCCCTCTTCAGATTGCCCCTGGTGTCCTTCACCCAGCTCCTCCTC
CAATCGCTCCTCCTCTAGTACAGCCCTCTCCCCCGGTAGCCAGAGCCGCCCCAGTGTGTGAGAC
TGTACCCGTTCATCCACTCCCACAAGGTGAAGTGCAGGGGCTGCCTCCGCCCCCGCCGCCGCCG
CCTCTGCCTCCTCCAGGCATTCGGCCATCATCACCTGTCACGGTCGCAGCTCTTGCGCATCCTC
CCTCTGGGCTCCACCCAACTCCATCTCCTGCCCCTGGTCCCCATGCTCCATTAATGCCTCCGTC
CCCACCTTCACAAGTCCTGCCTGCCTCTGAGCCAAAGCGCCATCCTTCCACCCTACCCGTGATC
AGTGACGCGAGGAGTGTGCTGCTGGAGGCCATACGGAAAGGCATTCAGCTTCGCAAAGTGGAAG
AGCAGCGTGAACAGGAAGCAAAGCATGAGCGGATTGAAAACGACGTGGCCACCATCCTGTCACG
CCGCATCGCTGTGGAGTACAGCGACTCGGAAGACGACTCGGAGTTCGATGAAGTAGACTGGCTG
GAGTGAGAGGGCCGAGTCGCCGTGGACGACTCGGAGTTCGATGAAGTAGACTGGCTTGAGTGAG
AGGGCCACGTCGCTCCGTGTTGCAAGGCTGAATGCACATGTCCTCTGTGGCGCTTGATCTTTGA
AAATGTTCGGTCATTCTAGTGTTTTGCTTCCTATTCCCCATGATGAATAACCCTTCTCCATAAT
TTTTGATTTCTATGAGAAGTATTAGCATATATTTCAAACTAAATATTTCACAGTGGCTTATCTT
CATCCCCCCCACCCCGGAAAATATAATTTGGCCCAATAAACTACTAAGTATTAAGCATGGACAG
CAGTTATTAGAGTAGCAGATTCAGTTTTTGATAGACCTTAATTGTGCACTTTGTGATGTTTTTT
TCTTTTAAATTTGAAGAACACAACCGAGAATGGAATCTTGAAGGCAGCTCTGTCCGTGGTTGAG
CCTTATTCCGTTTCTTGATGTTCTCAATGAAGACACACTGCCTCGATTACCCGAACGCACTCAG
AAAGAACATGTAGCTTGTAGTGTTGGATTCTCTTAAAGGAGTGGTTAGTTTTTGTTACCATTTT
ATTGTTTTTAAATACTTGCCTTATTTGAACGTTTAGCAGAACCCTTCCCCACTTATCTATTGTG
TGGTACAGTTTTGCTTGCCTATAGAAGTTTAAATTTTTCCATGTGAGATACTCAGAATAAGCAT
ACGTGTAACTTACATAATGTGAGAATTACAATCTGATGTAATAAACGGTTCATTTTAAAGGCT

hide sequence

RefSeq Acc Id:

XM_006256587 ⟹ XP_006256649

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	45,908,827 - 45,956,118 (+)	NCBI
mRatBN7.2	20	44,326,100 - 44,372,999 (+)	NCBI
Rnor_6.0	20	48,456,191 - 48,503,417 (-)	NCBI
Rnor_5.0	20	50,107,711 - 50,155,913 (-)	NCBI

Sequence:

show sequence

CGGCCCGGCGCCTCAGCCAGTGCCCGGCGCGGCTTCCATCCCGCAGCCCGACGCTCCCGAGGGG
CTCTTGGTGGCGTCCCAGCGCGGAGCTGGACGGGCGGCAGCCGCCGAAGCATGTAGAAGGGGTA
CGGCGCGAGCCCCCCACGGTTTCGCGGTGAGCTGGCACAGCGGCTGAGCTCAAGATGCCGCTGG
TGAAAAGAAACATCGACCCTAGGCACTTGTGCCACACAGCACTGCCCAGGGGCATTAAGAACGA
GCTGGAATGTGTGACCAACATCTCCCTGGCAAATATAATTAGACAACTGAGTAGCCTAAGTAAA
TATGCTGAAGACATATTTGGAGAATTATTCAATGAAGCACATAGTTTTTCCTTCAGAGTTAACT
CATTACAAGAGCGCGTGGACCGATTGTCCGTTAGTGTCACACAGCTTGATCCTAAAGAAGAAGA
ACTGTCCTTACAAGACATAACGATGAGAAAAGCTTTCCGGAGCTCTACAATTCAGGACCAGCAG
CTTTTCGACCGCAAGACTTTGCCTATCCCGCTGCAGGAAACGTACGATGTGTGCGAGCAGCCTC
CGCCTCTCAATGTCCTCACACCCTACAGGGACGATGGTAAGGAGGGGCTGAAGTTTTATACCAA
CCCTTCGTATTTCTTTGATCTGTGGAAAGAAAAGATGTTGCAAGATACAGAGGATAAGAGGAAG
GAAAAGAGAAAGCAGAAGAAAAATCTAGACCGTCCTCATGAACCAGAAAAAGTGCCAAGAGCAC
CACATGACAGGCGGCGAGAATGGCAGAAGCTGGCCCAAGGTCCAGAGCTGGCTGAAGATGATGC
CGATCTCCTCCACAAGCACATCGAAGTTGCTAACGGCCCAGCCTCTCATTTTGAGACAAGGCCG
CAGACATACGTGGACCACATGGATGGATCTTACTCACTCTCTGCCTTGCCATTCAGTCAGATGA
GTGAACTCCTAAGCAGAGCTGAGGAGAGGGTCTTAGTCAGACCCCATGAACCACCTCCACCTCC
ACCAATGCATGCAGCAGGGGATGCAAGACCCACCCCCACCTGTGTCAGCTCTGCTGCGGGTTTG
ATAGAGAATCGTCCCCAGTCCCCAGCTGCAGGCAGAACACCCGTGTTTGTGAGCCCCACGCCCC
CACCTCCTCCACCACCTCTCCCGTCTGCCCTGTCCACCTCCTCACTGAGAGCTTCCATGACCTC
AACTCCTCCCCCACCGGTGCCTCCCCCGCCTCCTCCTCCAGCCCCTGCCTTGCAGGCCCCAGCA
GTGCCCCCGCCTCCAGCCCCTCTTCAGATTGCCCCTGGTGTCCTTCACCCAGCTCCTCCTCCAA
TCGCTCCTCCTCTAGTACAGCCCTCTCCCCCGGTAGCCAGAGCCGCCCCAGTGTGTGAGACTGT
ACCCGTTCATCCACTCCCACAAGGTGAAGTGCAGGGGCTGCCTCCGCCCCCGCCGCCGCCGCCT
CTGCCTCCTCCAGGCATTCGGCCATCATCACCTGTCACGGTCGCAGCTCTTGCGCATCCTCCCT
CTGGGCTCCACCCAACTCCATCTCCTGCCCCTGGTCCCCATGCTCCATTAATGCCTCCGTCCCC
ACCTTCACAAGTCCTGCCTGCCTCTGAGCCAAAGCGCCATCCTTCCACCCTACCCGTGATCAGT
GACGCGAGGAGTGTGCTGCTGGAGGCCATACGGAAAGGCATTCAGCTTCGCAAAGTGGAAGAGC
AGCGTGAACAGGAAGCAAAGCATGAGCGGATTGAAAACGACGTGGCCACCATCCTGTCACGCCG
CATCGCTGTGGAGTACAGCGACTCGGAAGACGACTCGGAGTTCGATGAAGTAGACTGGCTGGAG
TGAGAGGGCCGAGTCGCCGTGGACGACTCGGAGTTCGATGAAGTAGACTGGCTTGAGTGAGAGG
GCCACGTCGCTCCGTGTTGCAAGGCTGAATGCACATGTCCTCTGTGGCGCTTGATCTTTGAAAA
TGTTCGGTCATTCTAGTGTTTTGCTTCCTATTCCCCATGATGAATAACCCTTCTCCATAATTTT
TGATTTCTATGAGAAGTATTAGCATATATTTCAAACTAAATATTTCACAGTGGCTTATCTTCAT
CCCCCCCACCCCGGAAAATATAATTTGGCCCAATAAACTACTAAGTATTAAGCATGGACAGCAG
TTATTAGAGTAGCAGATTCAGTTTTTGATAGACCTTAATTGTGCACTTTGTGATGTTTTTTTCT
TTTAAATTTGAAGAACACAACCGAGAATGGAATCTTGAAGGCAGCTCTGTCCGTGGTTGAGCCT
TATTCCGTTTCTTGATGTTCTCAATGAAGACACACTGCCTCGATTACCCGAACGCACTCAGAAA
GAACATGTAGCTTGTAGTGTTGGATTCTCTTAAAGGAGTGGTTAGTTTTTGTTACCATTTTATT
GTTTTTAAATACTTGCCTTATTTGAACGTTTAGCAGAACCCTTCCCCACTTATCTATTGTGTGG
TACAGTTTTGCTTGCCTATAGAAGTTTAAATTTTTCCATGTGAGATACTCAGAATAAGCATACG
TGTAACTTACATAATGTGAGAATTACAATCTGATGTAATAAACGGTTCATTTTAAAGGCT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001020285	(Get FASTA)	NCBI Sequence Viewer
	NP_001421553	(Get FASTA)	NCBI Sequence Viewer
	NP_001421554	(Get FASTA)	NCBI Sequence Viewer
	XP_006256648	(Get FASTA)	NCBI Sequence Viewer
	XP_006256649	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91322	(Get FASTA)	NCBI Sequence Viewer
	EDL83243	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000064342
GenBank Protein	Q5BJU7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020285 ⟸ NM_001025114

- UniProtKB:

Q5BJU7 (UniProtKB/Swiss-Prot), A6KTC6 (UniProtKB/TrEMBL), A0A8L2QX68 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSF
RVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIPLQETYDVC
EQPPPLNVLTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQKQKNLDRPHEPEK
VPRAPHDRRREWQKLAQGPELAEDDADLLHKHIEVANGPASHFETRPQTYVDHMDGSYSLSALP
FSQMSELLSRAEERVLVRPHEPPPPPPMHAAGDARPTPTCVSSAAGLIENRPQSPAAGRTPVFV
SPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPAPALQAPAVPPPPAPLQIAPGVLHP
APPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVAAL
AHPPSGLHPTPSPAPGPHAPLMPPSPPSQVLPASEPKRHPSTLPVISDARSVLLEAIRKGIQLR
KVEEQREQEAKHERIENDVATILSRRIAVEYSDSEDDSEFDEVDWLE

hide sequence

RefSeq Acc Id:

XP_006256649 ⟸ XM_006256587

- Peptide Label:

isoform X2

- Sequence:

show sequence

MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSF
RVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIPLQETYDVC
EQPPPLNVLTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQKKNLDRPHEPEKV
PRAPHDRRREWQKLAQGPELAEDDADLLHKHIEVANGPASHFETRPQTYVDHMDGSYSLSALPF
SQMSELLSRAEERVLVRPHEPPPPPPMHAAGDARPTPTCVSSAAGLIENRPQSPAAGRTPVFVS
PTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPAPALQAPAVPPPPAPLQIAPGVLHPA
PPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVAALA
HPPSGLHPTPSPAPGPHAPLMPPSPPSQVLPASEPKRHPSTLPVISDARSVLLEAIRKGIQLRK
VEEQREQEAKHERIENDVATILSRRIAVEYSDSEDDSEFDEVDWLE

hide sequence

RefSeq Acc Id:

XP_006256648 ⟸ XM_006256586

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSF
RVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLFDRKTLPIPLQETYDVC
EQPPPLNVLTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDKRKEKRKQKQKNLDRPHEPEK
VPRAPHDRRREWQKLAQGPELAEDDADLLHKHIEVANGPASHFETRPQTYVDHMDGSYSLSALP
FSQMSELLSRAEERVLVRPHEPPPPPPMHAAGDARPTPTCVSSAAGLIENRPQSPAAGRTPVFV
SPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPAPALQAPAVPPPPAPLQIAPGVLHP
APPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVAAL
AHPPSGLHPTPSPAPGPHAPLMPPSPPSQVLPASEPKRHPSTLPVISDARSVLLEAIRKGIQLR
KVEEQREQEAKHERIENDVATILSRRIAVEYSDSEDDSEFDEVDWLE

hide sequence

Ensembl Acc Id:

ENSRNOP00000064342 ⟸ ENSRNOT00000073091

Protein Domains

WH2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5BJU7-F1-model_v2	AlphaFold	Q5BJU7	1-559	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561954	AgrOrtholog
BioCyc Gene	G2FUF-3411	BioCyc
Ensembl Genes	ENSRNOG00000047476	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000073091	ENTREZGENE
Gene3D-CATH	1.20.5.340	UniProtKB/Swiss-Prot
	6.10.280.150	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7313558	IMAGE-MGC_LOAD
InterPro	SCAR/WAVE_fam	UniProtKB/Swiss-Prot
	WH2_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:294568	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109303	IMAGE-MGC_LOAD
NCBI Gene	294568	ENTREZGENE
PANTHER	PTHR12902	UniProtKB/Swiss-Prot
	WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY MEMBER 1	UniProtKB/Swiss-Prot
Pfam	WH2	UniProtKB/Swiss-Prot
PhenoGen	Wasf1	PhenoGen
PROSITE	WH2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000047476	RatGTEx
SMART	WH2	UniProtKB/Swiss-Prot
UniProt	A0A8L2QX68	ENTREZGENE, UniProtKB/TrEMBL
	A6KTC6	ENTREZGENE, UniProtKB/TrEMBL
	Q5BJU7	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-02	Wasf1	WASP family member 1	Wasf1	WAS protein family, member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Wasf1	WAS protein family, member 1	Wasf1	WASP family 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Wasf1	WASP family 1	Wasf1	WAS protein family, member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Wasf1	WAS protein family, member 1			Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	Wasf1	WAS protein family, member 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)