Hdac9 (histone deacetylase 9) - Rat Genome Database

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Gene: Hdac9 (histone deacetylase 9) Rattus norvegicus
Analyze
Symbol: Hdac9
Name: histone deacetylase 9
RGD ID: 1310748
Description: Predicted to enable several functions, including enzyme binding activity; histone deacetylase activity, hydrolytic mechanism; and transcription corepressor activity. Involved in neuron differentiation and response to amphetamine. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex; histone methyltransferase complex; and transcription regulator complex. Predicted to be active in cytoplasm. Biomarker of middle cerebral artery infarction. Orthologous to human HDAC9 (histone deacetylase 9); PARTICIPATES IN histone modification pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: histone deacetylase 9-like; LOC102552384; LOC314040; LOC500642; MEF2-interacting transcriptional repressor; MITR; RGD1310748; RGD1563092; similar to histone deacetylase 9 isoform 5; similar to histone deacetylase-related protein; similar to histone decetylase 9b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8656,489,472 - 57,351,654 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl656,490,988 - 57,351,835 (-)EnsemblGRCr8
mRatBN7.2650,762,074 - 51,624,311 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl650,763,590 - 51,625,333 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx651,044,408 - 51,614,840 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0651,359,348 - 51,929,789 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0650,815,529 - 51,385,069 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0653,487,367 - 54,358,694 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl653,488,883 - 54,059,119 (-)Ensemblrn6Rnor6.0
Rnor_5.0663,109,688 - 63,978,416 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4653,066,308 - 53,114,402 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera649,930,173 - 50,491,018 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3,5-diethoxycarbonyl-1,4-dihydrocollidine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
astragaloside IV  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
berberine  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
brequinar  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
diallyl trisulfide  (ISO)
dieldrin  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
fumaraldehyde  (ISO)
gemcitabine  (ISO)
genistein  (ISO)
glycidol  (EXP)
glyphosate  (EXP)
hydroquinone  (ISO)
indometacin  (ISO)
iron dichloride  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (EXP)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
okadaic acid  (ISO)
oxybenzone  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
PD 0325901  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
pirfenidone  (ISO)
resveratrol  (ISO)
S-adenosyl-L-methioninate  (ISO)
S-adenosyl-L-methionine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
valsartan  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Upregulation of class II histone deacetylases mRNA during neural differentiation of cultured rat hippocampal progenitor cells. Ajamian F, etal., Neurosci Lett 2003 Jul 31;346(1-2):57-60.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. HDAC4/5-HMGB1 signalling mediated by NADPH oxidase activity contributes to cerebral ischaemia/reperfusion injury. He M, etal., J Cell Mol Med. 2013 Apr;17(4):531-42. doi: 10.1111/jcmm.12040. Epub 2013 Mar 11.
4. Differential effects of binge methamphetamine injections on the mRNA expression of histone deacetylases (HDACs) in the rat striatum. Omonijo O, etal., Neurotoxicology. 2014 Oct 27;45C:178-184. doi: 10.1016/j.neuro.2014.10.008.
5. Physical and functional HAT/HDAC interplay regulates protein acetylation balance. Peserico A and Simone C, J Biomed Biotechnol. 2011;2011:371832. doi: 10.1155/2011/371832. Epub 2010 Dec 5.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. YY1 protects cardiac myocytes from pathologic hypertrophy by interacting with HDAC5. Sucharov CC, etal., Mol Biol Cell. 2008 Oct;19(10):4141-53. doi: 10.1091/mbc.E07-12-1217. Epub 2008 Jul 16.
Additional References at PubMed
PMID:10655483   PMID:10748098   PMID:11022042   PMID:11390982   PMID:11535832   PMID:12242305   PMID:12590135   PMID:15367668   PMID:15567413   PMID:15632090   PMID:16260608   PMID:16280321  
PMID:17360565   PMID:17786239   PMID:19303849   PMID:19351956   PMID:20188095   PMID:20525066   PMID:21746928   PMID:26865248   PMID:28572913   PMID:28855441   PMID:33480300   PMID:35927544  
PMID:36927982  


Genomics

Comparative Map Data
Hdac9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8656,489,472 - 57,351,654 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl656,490,988 - 57,351,835 (-)EnsemblGRCr8
mRatBN7.2650,762,074 - 51,624,311 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl650,763,590 - 51,625,333 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx651,044,408 - 51,614,840 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0651,359,348 - 51,929,789 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0650,815,529 - 51,385,069 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0653,487,367 - 54,358,694 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl653,488,883 - 54,059,119 (-)Ensemblrn6Rnor6.0
Rnor_5.0663,109,688 - 63,978,416 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4653,066,308 - 53,114,402 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera649,930,173 - 50,491,018 (-)NCBICelera
Cytogenetic Map6q16NCBI
HDAC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38718,086,825 - 19,002,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl718,086,949 - 19,002,416 (+)Ensemblhg38GRCh38
GRCh37718,126,448 - 19,042,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36718,501,894 - 19,003,518 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34718,309,165 - 18,808,925NCBI
Celera718,515,050 - 19,016,663 (+)NCBICelera
Cytogenetic Map7p21.1NCBI
HuRef718,012,000 - 18,921,632 (+)NCBIHuRef
CHM1_1718,127,641 - 19,037,820 (+)NCBICHM1_1
T2T-CHM13v2.0718,216,502 - 19,132,425 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2718,254,965 - 19,088,496 (+)NCBI
Hdac9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391234,097,579 - 34,967,094 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1234,097,579 - 34,967,094 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381234,047,580 - 34,917,095 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1234,047,580 - 34,917,095 (-)Ensemblmm10GRCm38
MGSCv371235,056,362 - 35,213,754 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361234,956,744 - 35,114,121 (-)NCBIMGSCv36mm8
Celera1235,799,634 - 35,959,002 (-)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1215.06NCBI
Hdac9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541021,245,562 - 21,932,023 (+)Ensembl
ChiLan1.0NW_00495541021,046,312 - 21,932,029 (+)NCBIChiLan1.0ChiLan1.0
HDAC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2622,919,135 - 23,830,896 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1771,243,859 - 72,155,637 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0718,740,580 - 19,653,615 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1718,138,665 - 18,975,832 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl718,138,761 - 18,970,717 (+)EnsemblpanPan2panpan1.1
HDAC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11432,469,349 - 33,310,439 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1432,588,414 - 33,304,387 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1431,927,168 - 32,838,858 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01432,319,281 - 33,231,263 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1432,517,048 - 33,226,313 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11432,429,177 - 33,340,446 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01432,129,507 - 33,041,580 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01432,446,823 - 33,358,024 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hdac9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511876,722,917 - 77,572,050 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365464,781,304 - 5,246,939 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365464,398,003 - 5,247,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl987,449,359 - 88,186,961 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1987,164,400 - 88,192,803 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21278,058,419 - 278,182,393 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HDAC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12139,159,270 - 39,859,403 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604264,474,174 - 65,386,992 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hdac9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473911,431,888 - 11,941,809 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473911,431,463 - 12,162,073 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Hdac9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1747,379,423 - 48,136,354 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hdac9
5543 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)64005241156848866Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat

Markers in Region
D6Rat132  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8656,545,837 - 56,546,064 (+)Marker Load Pipeline
mRatBN7.2650,818,445 - 50,818,672 (+)MAPPERmRatBN7.2
Rnor_6.0653,553,892 - 53,554,118NCBIRnor6.0
Rnor_5.0663,175,341 - 63,175,567UniSTSRnor5.0
RGSC_v3.4652,753,156 - 52,753,382UniSTSRGSC3.4
RGSC_v3.4652,753,065 - 52,753,434RGDRGSC3.4
Celera649,985,387 - 49,985,682UniSTS
RGSC_v3.1652,756,282 - 52,756,508RGD
RH 3.4 Map6335.4RGD
RH 3.4 Map6335.4UniSTS
RH 2.0 Map6522.1RGD
SHRSP x BN Map639.8098RGD
Cytogenetic Map6q16UniSTS
D6Got65  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,818,520 - 50,818,655 (+)MAPPERmRatBN7.2
Rnor_6.0653,553,967 - 53,554,101NCBIRnor6.0
Rnor_5.0663,175,416 - 63,175,550UniSTSRnor5.0
RGSC_v3.4652,753,231 - 52,753,365UniSTSRGSC3.4
RGSC_v3.4652,753,230 - 52,753,362RGDRGSC3.4
RGSC_v3.1652,756,356 - 52,756,488RGD
RH 3.4 Map6344.8RGD
RH 3.4 Map6344.8UniSTS
RH 2.0 Map6529.6RGD
Cytogenetic Map6q16UniSTS
BF386843  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,953,672 - 50,953,836 (+)MAPPERmRatBN7.2
Rnor_6.0653,687,765 - 53,687,928NCBIRnor6.0
Rnor_5.0663,309,054 - 63,309,217UniSTSRnor5.0
RGSC_v3.4652,889,164 - 52,889,327UniSTSRGSC3.4
Celera650,120,625 - 50,120,788UniSTS
RH 3.4 Map6348.4UniSTS
Cytogenetic Map6q16UniSTS
ha3186  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2651,310,262 - 51,311,668 (+)MAPPERmRatBN7.2
Rnor_6.0654,044,210 - 54,045,615NCBIRnor6.0
Rnor_5.0663,664,705 - 63,666,110UniSTSRnor5.0
RGSC_v3.4653,267,319 - 53,268,724UniSTSRGSC3.4
Celera650,476,112 - 50,477,517UniSTS
Cytogenetic Map6q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001200045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB558551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB558552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC721120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005521   ⟹   ENSRNOP00000005521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl656,490,988 - 57,052,571 (-)Ensembl
mRatBN7.2 Ensembl650,763,590 - 51,325,171 (-)Ensembl
Rnor_6.0 Ensembl653,488,883 - 54,059,119 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086038   ⟹   ENSRNOP00000071341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl656,490,988 - 57,152,397 (-)Ensembl
mRatBN7.2 Ensembl650,780,981 - 51,325,171 (-)Ensembl
Rnor_6.0 Ensembl653,598,866 - 54,020,406 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095056   ⟹   ENSRNOP00000082269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl656,490,988 - 57,052,571 (-)Ensembl
mRatBN7.2 Ensembl650,763,590 - 51,325,171 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098095   ⟹   ENSRNOP00000090853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl656,817,433 - 57,351,423 (-)Ensembl
mRatBN7.2 Ensembl651,087,942 - 51,625,333 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130249   ⟹   ENSRNOP00000103820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl656,490,988 - 57,052,571 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000143998   ⟹   ENSRNOP00000103860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl656,817,433 - 57,351,835 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000149262   ⟹   ENSRNOP00000106968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl656,683,284 - 57,052,571 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167241   ⟹   ENSRNOP00000103613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl656,817,433 - 56,970,040 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167388   ⟹   ENSRNOP00000106184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl656,490,988 - 57,351,714 (-)Ensembl
RefSeq Acc Id: NM_001200045   ⟹   NP_001186974
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,490,988 - 57,052,571 (-)NCBI
mRatBN7.2650,763,590 - 51,325,171 (-)NCBI
Rnor_6.0653,488,883 - 54,059,119 (-)NCBI
Rnor_5.0663,109,688 - 63,978,416 (-)NCBI
Celera649,930,173 - 50,491,018 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764614   ⟹   XP_008762836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,455 (-)NCBI
mRatBN7.2650,762,074 - 51,624,308 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764615   ⟹   XP_008762837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,815,165 - 57,351,455 (-)NCBI
mRatBN7.2651,087,778 - 51,624,291 (-)NCBI
Rnor_6.0653,821,198 - 54,358,688 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764616   ⟹   XP_008762838
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,455 (-)NCBI
mRatBN7.2650,762,074 - 51,624,305 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594362   ⟹   XP_017449851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,455 (-)NCBI
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594363   ⟹   XP_017449852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,455 (-)NCBI
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594365   ⟹   XP_017449854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,455 (-)NCBI
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594368   ⟹   XP_017449857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,815,165 - 57,351,455 (-)NCBI
mRatBN7.2651,087,778 - 51,624,287 (-)NCBI
Rnor_6.0653,821,198 - 54,358,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594371   ⟹   XP_017449860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,815,165 - 57,351,455 (-)NCBI
mRatBN7.2651,087,778 - 51,624,286 (-)NCBI
Rnor_6.0653,821,198 - 54,358,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112940   ⟹   XP_038968868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,153,397 (-)NCBI
mRatBN7.2650,762,074 - 51,426,257 (-)NCBI
RefSeq Acc Id: XM_039112945   ⟹   XP_038968873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,152,160 (-)NCBI
mRatBN7.2650,762,074 - 51,424,769 (-)NCBI
RefSeq Acc Id: XM_039112946   ⟹   XP_038968874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,132,245 (-)NCBI
mRatBN7.2650,762,074 - 51,383,539 (-)NCBI
RefSeq Acc Id: XM_039112949   ⟹   XP_038968877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 56,973,227 (-)NCBI
mRatBN7.2650,762,074 - 51,245,827 (-)NCBI
RefSeq Acc Id: XM_039112954   ⟹   XP_038968882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 56,969,462 (-)NCBI
mRatBN7.2650,762,074 - 51,242,071 (-)NCBI
RefSeq Acc Id: XM_039112955   ⟹   XP_038968883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,029,568 (-)NCBI
mRatBN7.2650,762,074 - 51,302,168 (-)NCBI
RefSeq Acc Id: XM_039112956   ⟹   XP_038968884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,153,506 (-)NCBI
mRatBN7.2650,762,074 - 51,426,115 (-)NCBI
RefSeq Acc Id: XM_039112957   ⟹   XP_038968885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,110,490 (-)NCBI
mRatBN7.2650,762,074 - 51,383,092 (-)NCBI
RefSeq Acc Id: XM_063262482   ⟹   XP_063118552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,654 (-)NCBI
RefSeq Acc Id: XM_063262483   ⟹   XP_063118553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,165 (-)NCBI
RefSeq Acc Id: XM_063262484   ⟹   XP_063118554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,455 (-)NCBI
RefSeq Acc Id: XM_063262485   ⟹   XP_063118555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,153,635 (-)NCBI
RefSeq Acc Id: XM_063262486   ⟹   XP_063118556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,171 (-)NCBI
RefSeq Acc Id: XM_063262487   ⟹   XP_063118557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,455 (-)NCBI
RefSeq Acc Id: XM_063262488   ⟹   XP_063118558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,153,635 (-)NCBI
RefSeq Acc Id: XM_063262489   ⟹   XP_063118559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,132,241 (-)NCBI
RefSeq Acc Id: XM_063262491   ⟹   XP_063118561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 56,970,386 (-)NCBI
RefSeq Acc Id: XM_063262492   ⟹   XP_063118562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,045,804 (-)NCBI
RefSeq Acc Id: XM_063262493   ⟹   XP_063118563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 56,969,461 (-)NCBI
RefSeq Acc Id: XM_063262494   ⟹   XP_063118564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,132,242 (-)NCBI
RefSeq Acc Id: XM_063262495   ⟹   XP_063118565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,654 (-)NCBI
RefSeq Acc Id: XM_063262496   ⟹   XP_063118566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,455 (-)NCBI
RefSeq Acc Id: XM_063262497   ⟹   XP_063118567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,455 (-)NCBI
RefSeq Acc Id: XM_063262499   ⟹   XP_063118569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,654 (-)NCBI
RefSeq Acc Id: XM_063262500   ⟹   XP_063118570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,063,670 (-)NCBI
RefSeq Acc Id: XM_063262501   ⟹   XP_063118571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,489,472 - 57,351,455 (-)NCBI
RefSeq Acc Id: XM_063262502   ⟹   XP_063118572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,815,165 - 57,350,840 (-)NCBI
RefSeq Acc Id: XM_063262503   ⟹   XP_063118573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,815,165 - 57,351,654 (-)NCBI
RefSeq Acc Id: XM_063262504   ⟹   XP_063118574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8656,815,165 - 57,351,455 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001186974 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430871 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430872 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430873 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762836 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762837 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762838 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449851 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449852 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449854 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449857 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449860 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968868 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968873 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968874 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968877 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968882 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968883 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968884 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968885 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118552 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118553 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118554 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118555 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118556 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118557 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118558 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118559 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118561 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118562 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118563 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118564 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118565 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118566 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118567 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118569 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118570 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118571 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118572 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118573 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118574 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAJ52888 (Get FASTA)   NCBI Sequence Viewer  
  BAJ52889 (Get FASTA)   NCBI Sequence Viewer  
  BDP99454 (Get FASTA)   NCBI Sequence Viewer  
  EDM03297 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005521
  ENSRNOP00000005521.6
  ENSRNOP00000071341
  ENSRNOP00000071341.3
  ENSRNOP00000082269.1
  ENSRNOP00000090853
  ENSRNOP00000090853.2
  ENSRNOP00000103613
  ENSRNOP00000103613.1
  ENSRNOP00000103820.1
  ENSRNOP00000103860
  ENSRNOP00000103860.1
  ENSRNOP00000106184
  ENSRNOP00000106184.1
  ENSRNOP00000106968.1
RefSeq Acc Id: NP_001186974   ⟸   NM_001200045
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL),   E5RQ38 (UniProtKB/TrEMBL),   F1MA74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762838   ⟸   XM_008764616
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762837   ⟸   XM_008764615
- Peptide Label: isoform X25
- UniProtKB: A0A8I6AB01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762836   ⟸   XM_008764614
- Peptide Label: isoform X14
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449852   ⟸   XM_017594363
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449851   ⟸   XM_017594362
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449854   ⟸   XM_017594365
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449857   ⟸   XM_017594368
- Peptide Label: isoform X23
- UniProtKB: A0A8I6AB01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449860   ⟸   XM_017594371
- Peptide Label: isoform X24
- UniProtKB: A0A8I6AB01 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005521   ⟸   ENSRNOT00000005521
Ensembl Acc Id: ENSRNOP00000071341   ⟸   ENSRNOT00000086038
RefSeq Acc Id: XP_038968868   ⟸   XM_039112940
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968884   ⟸   XM_039112956
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038968873   ⟸   XM_039112945
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL),   E5RQ38 (UniProtKB/TrEMBL),   F1MA74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968874   ⟸   XM_039112946
- Peptide Label: isoform X8
- UniProtKB: A0A0G2K082 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968885   ⟸   XM_039112957
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038968883   ⟸   XM_039112955
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038968877   ⟸   XM_039112949
- Peptide Label: isoform X9
- UniProtKB: A0A0G2K082 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968882   ⟸   XM_039112954
- Peptide Label: isoform X17
- UniProtKB: A0A0G2K082 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000082269   ⟸   ENSRNOT00000095056
Ensembl Acc Id: ENSRNOP00000090853   ⟸   ENSRNOT00000098095
RefSeq Acc Id: XP_063118569   ⟸   XM_063262499
- Peptide Label: isoform X15
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118565   ⟸   XM_063262495
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118552   ⟸   XM_063262482
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118557   ⟸   XM_063262487
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118567   ⟸   XM_063262497
- Peptide Label: isoform X13
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118566   ⟸   XM_063262496
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118554   ⟸   XM_063262484
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118571   ⟸   XM_063262501
- Peptide Label: isoform X18
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118556   ⟸   XM_063262486
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118553   ⟸   XM_063262483
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118558   ⟸   XM_063262488
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL),   E5RQ38 (UniProtKB/TrEMBL),   F1MA74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118555   ⟸   XM_063262485
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118564   ⟸   XM_063262494
- Peptide Label: isoform X10
- UniProtKB: A0A0G2K082 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118559   ⟸   XM_063262489
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL),   E5RQ38 (UniProtKB/TrEMBL),   F1MA74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118570   ⟸   XM_063262500
- Peptide Label: isoform X16
- UniProtKB: A0A0G2K082 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118562   ⟸   XM_063262492
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL),   E5RQ38 (UniProtKB/TrEMBL),   F1MA74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118561   ⟸   XM_063262491
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL),   E5RQ38 (UniProtKB/TrEMBL),   F1MA74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118563   ⟸   XM_063262493
- Peptide Label: isoform X10
- UniProtKB: A0A0G2K082 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118573   ⟸   XM_063262503
- Peptide Label: isoform X21
- UniProtKB: A0A8I6AB01 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118574   ⟸   XM_063262504
- Peptide Label: isoform X22
- UniProtKB: A0A8I6AB01 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118572   ⟸   XM_063262502
- Peptide Label: isoform X20
- UniProtKB: A0A8I6AB01 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103860   ⟸   ENSRNOT00000143998
Ensembl Acc Id: ENSRNOP00000106968   ⟸   ENSRNOT00000149262
Ensembl Acc Id: ENSRNOP00000106184   ⟸   ENSRNOT00000167388
Ensembl Acc Id: ENSRNOP00000103820   ⟸   ENSRNOT00000130249
Ensembl Acc Id: ENSRNOP00000103613   ⟸   ENSRNOT00000167241
Protein Domains
Histone deacetylase   Histone deacetylase glutamine rich N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E5RQ38-F1-model_v2 AlphaFold E5RQ38 1-1068 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310748 AgrOrtholog
BioCyc Gene G2FUF-37818 BioCyc
Ensembl Genes ENSRNOG00000004158 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005521 ENTREZGENE
  ENSRNOT00000005521.9 UniProtKB/TrEMBL
  ENSRNOT00000086038 ENTREZGENE
  ENSRNOT00000086038.3 UniProtKB/TrEMBL
  ENSRNOT00000095056.2 UniProtKB/TrEMBL
  ENSRNOT00000098095 ENTREZGENE
  ENSRNOT00000098095.2 UniProtKB/TrEMBL
  ENSRNOT00000130249.1 UniProtKB/TrEMBL
  ENSRNOT00000143998 ENTREZGENE
  ENSRNOT00000143998.1 UniProtKB/TrEMBL
  ENSRNOT00000149262.1 UniProtKB/TrEMBL
  ENSRNOT00000167241 ENTREZGENE
  ENSRNOT00000167241.1 UniProtKB/TrEMBL
  ENSRNOT00000167388 ENTREZGENE
  ENSRNOT00000167388.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.800.20 UniProtKB/TrEMBL
  6.10.250.1550 UniProtKB/TrEMBL
InterPro HDAC4/5/7/9 UniProtKB/TrEMBL
  His_deacetylse UniProtKB/TrEMBL
  His_deacetylse_dom UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/TrEMBL
  Hist_deacetylase_Gln_rich_N UniProtKB/TrEMBL
  Ureohydrolase_domain UniProtKB/TrEMBL
KEGG Report rno:687001 UniProtKB/TrEMBL
NCBI Gene Hdac9 ENTREZGENE
PANTHER HISTONE DEACETYLASE 9 UniProtKB/TrEMBL
  PTHR45364 UniProtKB/TrEMBL
Pfam HDAC4_Gln UniProtKB/TrEMBL
  Hist_deacetyl UniProtKB/TrEMBL
PhenoGen Hdac9 PhenoGen
PIRSF HDAC_II_euk UniProtKB/TrEMBL
PRINTS HDASUPER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004158 RatGTEx
Superfamily-SCOP SSF52768 UniProtKB/TrEMBL
UniProt A0A0G2K082 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWP6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AB01 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L7Q1_RAT UniProtKB/TrEMBL
  A0ABK0LEG6_RAT UniProtKB/TrEMBL
  A0ABK0LFN4_RAT UniProtKB/TrEMBL
  A0ABK0LLH0_RAT UniProtKB/TrEMBL
  A0ABK0LQP4_RAT UniProtKB/TrEMBL
  E5RQ38 ENTREZGENE, UniProtKB/TrEMBL
  E5RQ39_RAT UniProtKB/TrEMBL
  F1MA74 ENTREZGENE
UniProt Secondary F1MA74 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Hdac9  histone deacetylase 9  LOC102552384  histone deacetylase 9-like  Data merged from RGD:7578807 737654 PROVISIONAL
2013-12-18 LOC102552384  histone deacetylase 9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-03-19 Hdac9  histone deacetylase 9  RGD1563092  similar to histone deacetylase-related protein  Data merged from RGD:1563092 737654 APPROVED
2012-07-02 RGD1563092  similar to histone deacetylase-related protein  LOC687001  similar to histone deacetylase 9 isoform 5  Data merged from RGD:1590167 1643240 APPROVED
2009-04-14 Hdac9  histone deacetylase 9  RGD1310748  similar to histone decetylase 9b   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310748  similar to histone decetylase 9b   RGD1310748_predicted  similar to histone decetylase 9b (predicted)  'predicted' is removed 2292626 APPROVED
2008-04-30 RGD1563092  similar to histone deacetylase-related protein   RGD1563092_predicted  similar to histone deacetylase-related protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC687001  similar to histone deacetylase 9 isoform 5      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1563092_predicted  similar to histone deacetylase-related protein (predicted)  LOC500642  similar to histone deacetylase-related protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500642  similar to histone deacetylase-related protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1310748_predicted  similar to histone decetylase 9b (predicted)  LOC314040_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC314040_predicted  similar to histone decetylase 9b (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL