HDAC9 (histone deacetylase 9) - Rat Genome Database

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Gene: HDAC9 (histone deacetylase 9) Pan paniscus
Analyze
Symbol: HDAC9
Name: histone deacetylase 9
RGD ID: 11796801
Description: ENCODES a protein that exhibits histone deacetylase activity (ortholog); histone H3K14 deacetylase activity (ortholog); histone H3K9 deacetylase activity (ortholog); INVOLVED IN determination of adult lifespan (ortholog); DNA repair (ortholog); heart development (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH atherosclerosis (ortholog); Auriculocondylar Syndrome 4 (ortholog); genetic disease (ortholog); FOUND IN histone methyltransferase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2622,919,135 - 23,830,896 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1771,243,859 - 72,155,637 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0718,740,580 - 19,653,615 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1718,138,665 - 18,975,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl718,138,761 - 18,970,717 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
HDAC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2622,919,135 - 23,830,896 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1771,243,859 - 72,155,637 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0718,740,580 - 19,653,615 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1718,138,665 - 18,975,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl718,138,761 - 18,970,717 (+)Ensemblpanpan1.1panPan2
HDAC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38718,086,825 - 19,002,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl718,086,949 - 19,002,416 (+)EnsemblGRCh38hg38GRCh38
GRCh37718,126,448 - 19,042,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36718,501,894 - 19,003,518 (+)NCBINCBI36Build 36hg18NCBI36
Build 34718,309,165 - 18,808,925NCBI
Celera718,515,050 - 19,016,663 (+)NCBICelera
Cytogenetic Map7p21.1NCBI
HuRef718,012,000 - 18,921,632 (+)NCBIHuRef
CHM1_1718,127,641 - 19,037,820 (+)NCBICHM1_1
T2T-CHM13v2.0718,216,502 - 19,132,425 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2718,254,965 - 19,088,496 (+)NCBI
Hdac9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391234,097,579 - 34,967,094 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1234,097,579 - 34,967,094 (-)EnsemblGRCm39 Ensembl
GRCm381234,047,580 - 34,917,095 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1234,047,580 - 34,917,095 (-)EnsemblGRCm38mm10GRCm38
MGSCv371235,056,362 - 35,213,754 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361234,956,744 - 35,114,121 (-)NCBIMGSCv36mm8
Celera1235,799,634 - 35,959,002 (-)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1215.06NCBI
Hdac9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8656,489,472 - 57,351,654 (-)NCBIGRCr8
mRatBN7.2650,762,074 - 51,624,311 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl650,763,590 - 51,625,333 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx651,044,408 - 51,614,840 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0651,359,348 - 51,929,789 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0650,815,529 - 51,385,069 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0653,487,367 - 54,358,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl653,488,883 - 54,059,119 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0663,109,688 - 63,978,416 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4653,066,308 - 53,114,402 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera649,930,173 - 50,491,018 (-)NCBICelera
Cytogenetic Map6q16NCBI
Hdac9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541021,245,562 - 21,932,023 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541021,046,312 - 21,932,029 (+)NCBIChiLan1.0ChiLan1.0
HDAC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11432,469,349 - 33,310,439 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1432,588,414 - 33,304,387 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1431,927,168 - 32,838,858 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01432,319,281 - 33,231,263 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1432,517,048 - 33,226,313 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11432,429,177 - 33,340,446 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01432,129,507 - 33,041,580 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01432,446,823 - 33,358,024 (+)NCBIUU_Cfam_GSD_1.0
Hdac9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511876,722,917 - 77,572,050 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365464,781,304 - 5,246,939 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365464,398,003 - 5,247,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl987,449,359 - 88,186,961 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1987,164,400 - 88,192,803 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21278,058,419 - 278,182,393 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HDAC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12139,159,270 - 39,859,403 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604264,474,174 - 65,386,992 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hdac9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473911,431,888 - 11,941,809 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473911,431,463 - 12,162,073 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003825027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008978716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008978717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008978718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055115748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057302831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063606186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063606187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063606188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063606189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063606191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide DQ977307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JARIFH020000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000064126   ⟹   ENSPPAP00000041203
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl718,138,761 - 18,641,532 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000064130   ⟹   ENSPPAP00000041207
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl718,470,295 - 18,643,845 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000064133   ⟹   ENSPPAP00000041210
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl718,557,138 - 18,641,532 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000064165   ⟹   ENSPPAP00000041242
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl718,560,342 - 18,970,717 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000064169   ⟹   ENSPPAP00000041245
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl718,560,342 - 18,969,465 (+)Ensembl
RefSeq Acc Id: XM_034963753   ⟹   XP_034819644
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,243,939 - 72,155,637 (+)NCBI
Mhudiblu_PPA_v0718,740,776 - 19,647,040 (+)NCBI
RefSeq Acc Id: XM_034963756   ⟹   XP_034819647
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2623,323,428 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,648,165 - 72,155,637 (+)NCBI
Mhudiblu_PPA_v0719,144,825 - 19,647,040 (+)NCBI
RefSeq Acc Id: XM_034963758   ⟹   XP_034819649
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,135 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,243,859 - 72,155,637 (+)NCBI
Mhudiblu_PPA_v0718,740,580 - 19,653,615 (+)NCBI
RefSeq Acc Id: XM_034963759   ⟹   XP_034819650
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2623,371,635 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,696,359 - 72,155,637 (+)NCBI
Mhudiblu_PPA_v0719,193,008 - 19,647,040 (+)NCBI
RefSeq Acc Id: XM_034963761   ⟹   XP_034819652
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,243,975 - 72,155,637 (+)NCBI
Mhudiblu_PPA_v0718,740,580 - 19,319,121 (+)NCBI
RefSeq Acc Id: XM_034963766   ⟹   XP_034819657
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,243,974 - 72,155,637 (+)NCBI
Mhudiblu_PPA_v0718,740,580 - 19,319,121 (+)NCBI
RefSeq Acc Id: XM_034963767   ⟹   XP_034819658
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,135 - 23,497,794 (+)NCBI
NHGRI_mPanPan1771,243,859 - 71,822,518 (+)NCBI
Mhudiblu_PPA_v0718,740,580 - 19,319,121 (+)NCBI
RefSeq Acc Id: XM_055115734   ⟹   XP_054971709
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,243,972 - 72,155,637 (+)NCBI
RefSeq Acc Id: XM_055115735   ⟹   XP_054971710
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2623,120,334 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,445,054 - 72,155,637 (+)NCBI
RefSeq Acc Id: XM_055115736   ⟹   XP_054971711
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,243,973 - 72,155,637 (+)NCBI
RefSeq Acc Id: XM_055115737   ⟹   XP_054971712
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,243,973 - 72,155,637 (+)NCBI
RefSeq Acc Id: XM_055115738   ⟹   XP_054971713
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,243,937 - 72,155,637 (+)NCBI
RefSeq Acc Id: XM_055115739   ⟹   XP_054971714
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,243,973 - 72,155,637 (+)NCBI
RefSeq Acc Id: XM_055115740   ⟹   XP_054971715
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,243,971 - 72,155,637 (+)NCBI
RefSeq Acc Id: XM_055115741   ⟹   XP_054971716
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,830,896 (+)NCBI
NHGRI_mPanPan1771,243,973 - 72,155,637 (+)NCBI
RefSeq Acc Id: XM_055115743   ⟹   XP_054971718
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,497,794 (+)NCBI
NHGRI_mPanPan1771,243,976 - 71,822,518 (+)NCBI
RefSeq Acc Id: XM_055115745   ⟹   XP_054971720
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2623,120,541 - 23,497,794 (+)NCBI
NHGRI_mPanPan1771,445,265 - 71,822,518 (+)NCBI
RefSeq Acc Id: XM_055115746   ⟹   XP_054971721
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,497,794 (+)NCBI
NHGRI_mPanPan1771,243,976 - 71,822,518 (+)NCBI
RefSeq Acc Id: XM_055115747   ⟹   XP_054971722
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,497,794 (+)NCBI
NHGRI_mPanPan1771,243,976 - 71,822,518 (+)NCBI
RefSeq Acc Id: XM_055115748   ⟹   XP_054971723
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,497,794 (+)NCBI
NHGRI_mPanPan1771,243,976 - 71,822,518 (+)NCBI
RefSeq Acc Id: XM_057302831   ⟹   XP_057158814
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,135 - 23,497,794 (+)NCBI
NHGRI_mPanPan1771,243,859 - 71,822,518 (+)NCBI
RefSeq Acc Id: XM_063606186   ⟹   XP_063462256
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,497,794 (+)NCBI
RefSeq Acc Id: XM_063606187   ⟹   XP_063462257
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,135 - 23,497,794 (+)NCBI
RefSeq Acc Id: XM_063606188   ⟹   XP_063462258
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,497,794 (+)NCBI
RefSeq Acc Id: XM_063606189   ⟹   XP_063462259
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,135 - 23,497,794 (+)NCBI
RefSeq Acc Id: XM_063606191   ⟹   XP_063462261
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2622,919,211 - 23,483,784 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034819644 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819647 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819649 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819650 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819652 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819657 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819658 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971709 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971710 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971711 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971712 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971713 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971714 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971715 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971716 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971718 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971720 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971721 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971722 (Get FASTA)   NCBI Sequence Viewer  
  XP_054971723 (Get FASTA)   NCBI Sequence Viewer  
  XP_057158814 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462256 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462257 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462258 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462259 (Get FASTA)   NCBI Sequence Viewer  
  XP_063462261 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000041203.1
  ENSPPAP00000041207.1
  ENSPPAP00000041210.1
  ENSPPAP00000041242.1
  ENSPPAP00000041245.1
Reference Protein Sequences
RefSeq Acc Id: XP_034819649   ⟸   XM_034963758
- Peptide Label: isoform X13
- UniProtKB: A0A2R9CH10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034819652   ⟸   XM_034963761
- Peptide Label: isoform X5
- UniProtKB: A0A2R9CQX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034819657   ⟸   XM_034963766
- Peptide Label: isoform X11
- UniProtKB: A0A2R9CH10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034819658   ⟸   XM_034963767
- Peptide Label: isoform X23
- UniProtKB: A0A2R9CQV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034819644   ⟸   XM_034963753
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CQX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034819647   ⟸   XM_034963756
- Peptide Label: isoform X8
- UniProtKB: A0A2R9CQX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034819650   ⟸   XM_034963759
- Peptide Label: isoform X14
- UniProtKB: A0A2R9CQX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000041210   ⟸   ENSPPAT00000064133
RefSeq Acc Id: ENSPPAP00000041207   ⟸   ENSPPAT00000064130
RefSeq Acc Id: ENSPPAP00000041203   ⟸   ENSPPAT00000064126
RefSeq Acc Id: ENSPPAP00000041242   ⟸   ENSPPAT00000064165
RefSeq Acc Id: ENSPPAP00000041245   ⟸   ENSPPAT00000064169
RefSeq Acc Id: XP_054971713   ⟸   XM_055115738
- Peptide Label: isoform X7
- UniProtKB: A0A2R9CQX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971715   ⟸   XM_055115740
- Peptide Label: isoform X10
- UniProtKB: A0A2R9CH10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971709   ⟸   XM_055115734
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CQX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971714   ⟸   XM_055115739
- Peptide Label: isoform X9
- UniProtKB: A0A2R9CH10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971712   ⟸   XM_055115737
- Peptide Label: isoform X6
- UniProtKB: A0A2R9CQX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971716   ⟸   XM_055115741
- Peptide Label: isoform X12
- UniProtKB: A0A2R9CH10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971711   ⟸   XM_055115736
- Peptide Label: isoform X4
- UniProtKB: A0A2R9CQX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971721   ⟸   XM_055115746
- Peptide Label: isoform X20
- UniProtKB: A0A2R9CQV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971718   ⟸   XM_055115743
- Peptide Label: isoform X15
- UniProtKB: A0A2R9CGX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971722   ⟸   XM_055115747
- Peptide Label: isoform X24
- UniProtKB: A0A2R9CJK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971723   ⟸   XM_055115748
- Peptide Label: isoform X25
- UniProtKB: A0A2R9CJK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971710   ⟸   XM_055115735
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CQX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054971720   ⟸   XM_055115745
- Peptide Label: isoform X19
- UniProtKB: A0A2R9CGX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057158814   ⟸   XM_057302831
- Peptide Label: isoform X21
- UniProtKB: A0A2R9CJK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063462259   ⟸   XM_063606189
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063462257   ⟸   XM_063606187
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063462256   ⟸   XM_063606186
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063462258   ⟸   XM_063606188
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063462261   ⟸   XM_063606191
- Peptide Label: isoform X26
Protein Domains
Histone deacetylase   Histone deacetylase glutamine rich N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043202 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000064126.1 UniProtKB/TrEMBL
  ENSPPAT00000064130.1 UniProtKB/TrEMBL
  ENSPPAT00000064133.1 UniProtKB/TrEMBL
  ENSPPAT00000064165.1 UniProtKB/TrEMBL
  ENSPPAT00000064169.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.800.20 UniProtKB/TrEMBL
  6.10.250.1550 UniProtKB/TrEMBL
InterPro HDAC4/5/7/9 UniProtKB/TrEMBL
  His_deacetylse UniProtKB/TrEMBL
  His_deacetylse_dom UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/TrEMBL
  Hist_deacetylase_Gln_rich_N UniProtKB/TrEMBL
  Ureohydrolase_dom_sf UniProtKB/TrEMBL
NCBI Gene HDAC9 ENTREZGENE
PANTHER HISTONE DEACETYLASE 9 UniProtKB/TrEMBL
  PTHR45364 UniProtKB/TrEMBL
Pfam HDAC4_Gln UniProtKB/TrEMBL
  Hist_deacetyl UniProtKB/TrEMBL
PIRSF HDAC_II_euk UniProtKB/TrEMBL
PRINTS HDASUPER UniProtKB/TrEMBL
Superfamily-SCOP SSF52768 UniProtKB/TrEMBL
UniProt A0A2R9CGX4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CH10 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CJK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CQV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CQX6 ENTREZGENE, UniProtKB/TrEMBL