Zbtb38 (zinc finger and BTB domain containing 38) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Zbtb38 (zinc finger and BTB domain containing 38) Rattus norvegicus
Analyze
Symbol: Zbtb38
Name: zinc finger and BTB domain containing 38
RGD ID: 1310136
Description: Enables DNA-binding transcription factor activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleus. Orthologous to human ZBTB38 (zinc finger and BTB domain containing 38); PARTICIPATES IN DNA modification pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC315936; RGD1310136; similar to kaiso protein; zenon; zinc finger and BTB domain-containing protein 38; zinc finger protein expressed in neurons; zinc finger transcription factor Kaiso
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88106,124,181 - 106,231,215 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8106,157,084 - 106,230,951 (-)EnsemblGRCr8
mRatBN7.2897,284,617 - 97,288,518 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl897,280,993 - 97,485,625 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8102,950,345 - 102,954,245 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08101,149,591 - 101,153,491 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0898,988,547 - 98,992,447 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08104,566,999 - 104,694,890 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,589,621 - 104,593,625 (-)Ensemblrn6Rnor6.0
Rnor_5.08104,013,746 - 104,141,365 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48101,782,699 - 101,786,600 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera896,727,009 - 96,730,910 (-)NCBICelera
RGSC_v3.18101,802,153 - 101,806,055 (-)NCBI
Cytogenetic Map8q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-palmitoylglycerol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
DDE  (ISO)
Dibutyl phosphate  (ISO)
doxorubicin  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
hydrogen cyanide  (ISO)
iron dichloride  (ISO)
leflunomide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
potassium chromate  (ISO)
potassium cyanide  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (EXP)
tetraphene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
nucleoplasm  (ISO)
nucleus  (IDA,IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. On how mammalian transcription factors recognize methylated DNA. Buck-Koehntop BA and Defossez PA, Epigenetics. 2013 Feb;8(2):131-7. doi: 10.4161/epi.23632. Epub 2013 Jan 16.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ZENON, a novel POZ Kruppel-like DNA binding protein associated with differentiation and/or survival of late postmitotic neurons. Kiefer H, etal., Mol Cell Biol. 2005 Mar;25(5):1713-29.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:16354688   PMID:22082260   PMID:22516433   PMID:24726359  


Genomics

Comparative Map Data
Zbtb38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88106,124,181 - 106,231,215 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8106,157,084 - 106,230,951 (-)EnsemblGRCr8
mRatBN7.2897,284,617 - 97,288,518 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl897,280,993 - 97,485,625 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8102,950,345 - 102,954,245 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08101,149,591 - 101,153,491 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0898,988,547 - 98,992,447 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08104,566,999 - 104,694,890 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,589,621 - 104,593,625 (-)Ensemblrn6Rnor6.0
Rnor_5.08104,013,746 - 104,141,365 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48101,782,699 - 101,786,600 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera896,727,009 - 96,730,910 (-)NCBICelera
RGSC_v3.18101,802,153 - 101,806,055 (-)NCBI
Cytogenetic Map8q31NCBI
ZBTB38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383141,324,186 - 141,449,792 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3141,324,154 - 141,449,792 (+)Ensemblhg38GRCh38
GRCh373141,043,028 - 141,168,634 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363142,525,745 - 142,651,324 (+)NCBIBuild 36Build 36hg18NCBI36
Celera3139,466,550 - 139,592,174 (+)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3138,418,028 - 138,543,648 (+)NCBIHuRef
CHM1_13141,005,858 - 141,131,749 (+)NCBICHM1_1
T2T-CHM13v2.03144,071,778 - 144,197,435 (+)NCBIT2T-CHM13v2.0
Zbtb38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39996,564,820 - 96,613,728 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl996,564,823 - 96,634,884 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38996,682,767 - 96,731,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl996,682,770 - 96,752,831 (-)Ensemblmm10GRCm38
MGSCv37996,585,842 - 96,632,094 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36996,495,619 - 96,541,027 (-)NCBIMGSCv36mm8
Celera996,241,020 - 96,287,268 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.71NCBI
Zbtb38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555084,260,716 - 4,297,435 (-)Ensembl
ChiLan1.0NW_0049555084,260,716 - 4,297,435 (-)NCBIChiLan1.0ChiLan1.0
ZBTB38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,277,994 - 139,358,799 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13139,282,692 - 139,363,532 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03138,401,279 - 138,481,969 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13145,954,568 - 146,079,500 (+)NCBIPanPan1.1PanPan1.1panPan2
ZBTB38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12337,283,794 - 37,344,316 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2337,297,101 - 37,341,506 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2337,204,078 - 37,337,108 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02337,741,900 - 37,874,509 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2337,795,756 - 37,874,493 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12337,425,079 - 37,557,988 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02337,502,716 - 37,635,250 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02337,744,769 - 37,878,042 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zbtb38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560276,467,370 - 76,523,590 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365403,198,254 - 3,262,475 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365403,207,044 - 3,263,373 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1382,064,565 - 82,195,319 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11382,053,887 - 82,195,321 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21389,895,533 - 90,036,843 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11549,160,877 - 49,203,378 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1549,160,896 - 49,164,486 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604122,065,957 - 22,224,470 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473017,952,620 - 18,075,245 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473017,952,625 - 18,075,245 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Zbtb38
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1888,136,702 - 88,190,055 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zbtb38
1069 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:233
Count of miRNA genes:173
Interacting mature miRNAs:191
Transcripts:ENSRNOT00000016625
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)863404444108404444Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
AW530896  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2897,288,039 - 97,288,229 (+)MAPPERmRatBN7.2
Rnor_6.08104,593,021 - 104,593,210NCBIRnor6.0
Rnor_5.08104,039,563 - 104,039,752UniSTSRnor5.0
RGSC_v3.48101,786,122 - 101,786,311UniSTSRGSC3.4
Celera896,730,432 - 96,730,621UniSTS
RH 3.4 Map81052.3UniSTS
Cytogenetic Map8q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_356506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_356507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY623002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000016625   ⟹   ENSRNOP00000067350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8106,157,084 - 106,230,951 (-)Ensembl
mRatBN7.2 Ensembl897,281,546 - 97,296,084 (-)Ensembl
Rnor_6.0 Ensembl8104,589,621 - 104,593,625 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097273   ⟹   ENSRNOP00000078634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,282,074 - 97,485,625 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097643   ⟹   ENSRNOP00000081438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,331,437 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100368   ⟹   ENSRNOP00000094159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,281,584 - 97,318,750 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102946   ⟹   ENSRNOP00000095257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8106,160,280 - 106,230,654 (-)Ensembl
mRatBN7.2 Ensembl897,280,993 - 97,318,750 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103605   ⟹   ENSRNOP00000095446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,351,352 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107023   ⟹   ENSRNOP00000093204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,318,750 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111528   ⟹   ENSRNOP00000081285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8106,160,281 - 106,229,745 (-)Ensembl
mRatBN7.2 Ensembl897,280,993 - 97,351,380 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115816   ⟹   ENSRNOP00000097975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,331,437 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119448   ⟹   ENSRNOP00000094938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl897,280,993 - 97,351,380 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120592   ⟹   ENSRNOP00000098232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8106,160,280 - 106,174,182 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000121360   ⟹   ENSRNOP00000103824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8106,157,084 - 106,230,951 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000133019   ⟹   ENSRNOP00000100982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8106,157,715 - 106,230,941 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000151538   ⟹   ENSRNOP00000102687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8106,159,346 - 106,212,219 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154527   ⟹   ENSRNOP00000108939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8106,157,715 - 106,229,692 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000162262   ⟹   ENSRNOP00000106022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8106,157,715 - 106,209,040 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000162886   ⟹   ENSRNOP00000100878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8106,159,019 - 106,220,448 (-)Ensembl
RefSeq Acc Id: NM_001012471   ⟹   NP_001012489
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,164,161 - 106,168,062 (-)NCBI
mRatBN7.2897,284,617 - 97,288,518 (-)NCBI
Rnor_6.08104,589,598 - 104,593,499 (-)NCBI
Rnor_5.08104,013,746 - 104,141,365 (-)NCBI
RGSC_v3.48101,782,699 - 101,786,600 (-)RGD
Celera896,727,009 - 96,730,910 (-)RGD
Sequence:
RefSeq Acc Id: XM_063265575   ⟹   XP_063121645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,196,963 (-)NCBI
RefSeq Acc Id: XM_063265576   ⟹   XP_063121646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,195,502 (-)NCBI
RefSeq Acc Id: XM_063265577   ⟹   XP_063121647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,191,364 (-)NCBI
RefSeq Acc Id: XM_063265578   ⟹   XP_063121648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,230,891 (-)NCBI
RefSeq Acc Id: XM_063265579   ⟹   XP_063121649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,230,891 (-)NCBI
RefSeq Acc Id: XM_063265580   ⟹   XP_063121650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,175,641 (-)NCBI
RefSeq Acc Id: XM_063265581   ⟹   XP_063121651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,230,891 (-)NCBI
RefSeq Acc Id: XM_063265582   ⟹   XP_063121652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,230,891 (-)NCBI
RefSeq Acc Id: XM_063265583   ⟹   XP_063121653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,196,487 (-)NCBI
RefSeq Acc Id: XM_063265584   ⟹   XP_063121654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,161,802 - 106,196,560 (-)NCBI
RefSeq Acc Id: XR_010053973
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,139,460 - 106,231,214 (-)NCBI
RefSeq Acc Id: XR_010053974
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,124,181 - 106,231,214 (-)NCBI
RefSeq Acc Id: XR_010053975
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,124,181 - 106,231,215 (-)NCBI
RefSeq Acc Id: XR_010053976
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,124,181 - 106,231,214 (-)NCBI
RefSeq Acc Id: XR_010053977
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,139,460 - 106,230,988 (-)NCBI
RefSeq Acc Id: XR_010053978
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,139,460 - 106,231,014 (-)NCBI
RefSeq Acc Id: NP_001012489   ⟸   NM_001012471
- UniProtKB: M0RCM7 (UniProtKB/TrEMBL),   A6I286 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067350   ⟸   ENSRNOT00000016625
Ensembl Acc Id: ENSRNOP00000097975   ⟸   ENSRNOT00000115816
Ensembl Acc Id: ENSRNOP00000094938   ⟸   ENSRNOT00000119448
Ensembl Acc Id: ENSRNOP00000095257   ⟸   ENSRNOT00000102946
Ensembl Acc Id: ENSRNOP00000093204   ⟸   ENSRNOT00000107023
Ensembl Acc Id: ENSRNOP00000094159   ⟸   ENSRNOT00000100368
Ensembl Acc Id: ENSRNOP00000095446   ⟸   ENSRNOT00000103605
Ensembl Acc Id: ENSRNOP00000081438   ⟸   ENSRNOT00000097643
Ensembl Acc Id: ENSRNOP00000081285   ⟸   ENSRNOT00000111528
Ensembl Acc Id: ENSRNOP00000078634   ⟸   ENSRNOT00000097273
RefSeq Acc Id: XP_063121651   ⟸   XM_063265581
- Peptide Label: isoform X2
- UniProtKB: A6I286 (UniProtKB/TrEMBL),   M0RCM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121649   ⟸   XM_063265579
- Peptide Label: isoform X2
- UniProtKB: A6I286 (UniProtKB/TrEMBL),   M0RCM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121648   ⟸   XM_063265578
- Peptide Label: isoform X2
- UniProtKB: A6I286 (UniProtKB/TrEMBL),   M0RCM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121652   ⟸   XM_063265582
- Peptide Label: isoform X2
- UniProtKB: A6I286 (UniProtKB/TrEMBL),   M0RCM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121645   ⟸   XM_063265575
- Peptide Label: isoform X1
- UniProtKB: A6I286 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121654   ⟸   XM_063265584
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121653   ⟸   XM_063265583
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121646   ⟸   XM_063265576
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121647   ⟸   XM_063265577
- Peptide Label: isoform X2
- UniProtKB: A6I286 (UniProtKB/TrEMBL),   M0RCM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121650   ⟸   XM_063265580
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000100982   ⟸   ENSRNOT00000133019
Ensembl Acc Id: ENSRNOP00000102687   ⟸   ENSRNOT00000151538
Ensembl Acc Id: ENSRNOP00000098232   ⟸   ENSRNOT00000120592
Ensembl Acc Id: ENSRNOP00000103824   ⟸   ENSRNOT00000121360
Ensembl Acc Id: ENSRNOP00000100878   ⟸   ENSRNOT00000162886
Ensembl Acc Id: ENSRNOP00000106022   ⟸   ENSRNOT00000162262
Ensembl Acc Id: ENSRNOP00000108939   ⟸   ENSRNOT00000154527
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5EXX3-F1-model_v2 AlphaFold Q5EXX3 1-1203 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310136 AgrOrtholog
BioCyc Gene G2FUF-29449 BioCyc
Ensembl Genes ENSRNOG00000012386 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000016625 ENTREZGENE
  ENSRNOT00000102946 ENTREZGENE
  ENSRNOT00000111528 ENTREZGENE
  ENSRNOT00000120592 ENTREZGENE
  ENSRNOT00000121360 ENTREZGENE
  ENSRNOT00000154527 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
  Potassium Channel Kv1.1, Chain A UniProtKB/Swiss-Prot
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report rno:315936 UniProtKB/Swiss-Prot
NCBI Gene 315936 ENTREZGENE
PANTHER ZINC FINGER AND BTB DOMAIN CONTAINING 33 UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot
Pfam BTB UniProtKB/Swiss-Prot
  zf-C2H2 UniProtKB/Swiss-Prot
  zf-C2H2_6 UniProtKB/Swiss-Prot
PhenoGen Zbtb38 PhenoGen
PROSITE BTB UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012386 RatGTEx
SMART BTB UniProtKB/Swiss-Prot
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot
  SSF57667 UniProtKB/Swiss-Prot
UniProt A6I286 ENTREZGENE, UniProtKB/TrEMBL
  M0RCM7 ENTREZGENE, UniProtKB/TrEMBL
  Q5EXX3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Zbtb38  zinc finger and BTB domain containing 38  RGD1310136  similar to kaiso protein; zinc finger transcription factor Kaiso  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1310136  similar to kaiso protein; zinc finger transcription factor Kaiso  RGD1310136_predicted  similar to kaiso protein; zinc finger transcription factor Kaiso (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310136_predicted  similar to kaiso protein; zinc finger transcription factor Kaiso (predicted)  LOC315936_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315936_predicted  similar to kaiso protein; zinc finger transcription factor Kaiso (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL