Zbtb38 (zinc finger and BTB domain containing 38) - Rat Genome Database

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Gene: Zbtb38 (zinc finger and BTB domain containing 38) Ictidomys tridecemlineatus
Analyze
Symbol: Zbtb38
Name: zinc finger and BTB domain containing 38
RGD ID: 12605101
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain-containing protein 38
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560276,467,370 - 76,523,590 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365403,198,254 - 3,262,475 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365403,207,044 - 3,263,373 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zbtb38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560276,467,370 - 76,523,590 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365403,198,254 - 3,262,475 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365403,207,044 - 3,263,373 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383141,324,186 - 141,449,792 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3141,324,213 - 141,449,792 (+)EnsemblGRCh38hg38GRCh38
GRCh373141,043,028 - 141,168,634 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363142,525,745 - 142,651,324 (+)NCBINCBI36Build 36hg18NCBI36
Celera3139,466,550 - 139,592,174 (+)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3138,418,028 - 138,543,648 (+)NCBIHuRef
CHM1_13141,005,858 - 141,131,749 (+)NCBICHM1_1
T2T-CHM13v2.03144,071,778 - 144,197,435 (+)NCBIT2T-CHM13v2.0
Zbtb38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39996,564,820 - 96,613,728 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl996,564,823 - 96,634,884 (-)EnsemblGRCm39 Ensembl
GRCm38996,682,767 - 96,731,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl996,682,770 - 96,752,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37996,585,842 - 96,632,094 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36996,495,619 - 96,541,027 (-)NCBIMGSCv36mm8
Celera996,241,020 - 96,287,268 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.71NCBI
Zbtb38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88106,124,181 - 106,231,215 (-)NCBIGRCr8
mRatBN7.2897,284,617 - 97,288,518 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl897,280,993 - 97,485,625 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8102,950,345 - 102,954,245 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08101,149,591 - 101,153,491 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0898,988,547 - 98,992,447 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08104,566,999 - 104,694,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,589,621 - 104,593,625 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08104,013,746 - 104,141,365 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48101,782,699 - 101,786,600 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18101,802,153 - 101,806,055 (-)NCBI
Celera896,727,009 - 96,730,910 (-)NCBICelera
Cytogenetic Map8q31NCBI
Zbtb38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555084,260,716 - 4,297,435 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555084,260,716 - 4,297,435 (-)NCBIChiLan1.0ChiLan1.0
ZBTB38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,277,994 - 139,358,799 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13139,282,692 - 139,363,532 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03138,401,279 - 138,481,969 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13145,954,568 - 146,079,500 (+)NCBIpanpan1.1PanPan1.1panPan2
ZBTB38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12337,283,794 - 37,344,316 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2337,297,101 - 37,341,506 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2337,204,078 - 37,337,108 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02337,741,900 - 37,874,509 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2337,795,756 - 37,874,493 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12337,425,079 - 37,557,988 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02337,502,716 - 37,635,250 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02337,744,769 - 37,878,042 (+)NCBIUU_Cfam_GSD_1.0
ZBTB38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1382,064,565 - 82,195,319 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11382,053,887 - 82,195,321 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21389,895,533 - 90,036,843 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11549,160,877 - 49,203,378 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1549,160,896 - 49,164,486 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604122,065,957 - 22,224,470 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473017,952,620 - 18,075,245 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473017,952,625 - 18,075,245 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021728280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000022532   ⟹   ENSSTOP00000018438
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365403,198,254 - 3,262,475 (+)Ensembl
RefSeq Acc Id: XM_021728280   ⟹   XP_021583955
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560276,467,370 - 76,523,590 (+)NCBI
SpeTri2.0NW_0049365403,207,044 - 3,263,373 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021583955 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018438.1
Reference Protein Sequences
RefSeq Acc Id: XP_021583955   ⟸   XM_021728280
- UniProtKB: I3N242 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000018438   ⟸   ENSSTOT00000022532
Protein Domains
BTB   C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025333 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022532.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zbtb38 ENTREZGENE
PANTHER ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 11 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt I3N242 ENTREZGENE, UniProtKB/TrEMBL