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Gene: Pip5k1c (phosphatidylinositol-4-phosphate 5-kinase type 1 gamma) Rattus norvegicus

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Symbol:

Pip5k1c

Name:

phosphatidylinositol-4-phosphate 5-kinase type 1 gamma

RGD ID:

1309938

Description:

Predicted to enable 1-phosphatidylinositol-4-phosphate 5-kinase activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process; regulation of postsynaptic neurotransmitter receptor internalization; and regulation of synaptic vesicle endocytosis. Predicted to act upstream of or within axonogenesis; phosphatidylinositol biosynthetic process; and platelet aggregation. Is active in presynaptic endocytic zone membrane. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome 3. Orthologous to human PIP5K1C (phosphatidylinositol-4-phosphate 5-kinase type 1 gamma); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; E-cadherin signaling pathway; epidermal growth factor/neuregulin signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; Brodifacoum.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC314641; MGC124518; phosphatidylinositol 4-phosphate 5-kinase type I gamma; phosphatidylinositol 4-phosphate 5-kinase type-1 gamma; phosphatidylinositol-4-phosphate 5-kinase type-1 gamma; phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma; phosphatidylinositol-4-phosphate 5-kinase, type I, gamma; PIP5K1-gamma; PIP5KIgamma; ptdIns(4)P-5-kinase 1 gamma; ptdIns(4)P-5-kinase gamma; ptdInsPKIgamma

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,048,135 - 9,076,751 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	9,048,146 - 9,076,716 (-)	Ensembl				GRCr8
mRatBN7.2	7	8,397,406 - 8,426,030 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,397,406 - 8,425,988 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	11,282,985 - 11,310,700 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,158,469 - 13,186,184 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	11,026,097 - 11,053,748 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,267,207 - 11,294,291 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,267,218 - 11,294,249 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	11,433,945 - 11,461,690 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	9,881,767 - 9,909,651 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	6,586,357 - 6,614,359 (-)	NCBI		Celera
RGSC_v3.1	7	9,884,380 - 9,909,590 (-)	NCBI
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

lethal congenital contracture syndrome 3 (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cannabidiol (EXP)

chloroacetaldehyde (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

clodronic acid (ISO)

clothianidin (ISO)

DDE (ISO)

deoxycholic acid (ISO)

dicrotophos (ISO)

dioxygen (ISO)

endosulfan (EXP)

ethanol (ISO)

fenthion (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

leflunomide (ISO)

methidathion (ISO)

nicotine (ISO)

Nor-9-carboxy-delta9-THC (ISO)

orphenadrine (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonogenesis (ISO)

biological_process (ND)

cell adhesion (IEA)

chemotaxis (IEA)

endocytosis (IEA)

exocytosis (IEA)

lipid metabolic process (IEA)

phagocytosis (IEA)

phosphatidylinositol biosynthetic process (ISO)

phosphatidylinositol metabolic process (IEA,ISO)

phosphatidylinositol phosphate biosynthetic process (IBA)

platelet aggregation (ISO)

regulation of postsynaptic neurotransmitter receptor internalization (ISO)

regulation of synaptic vesicle endocytosis (ISO)

Cellular Component

adherens junction (IEA)

cytoplasm (IEA)

cytosol (IEA,ISO)

endomembrane system (IEA)

endosome membrane (IEA,ISO,ISS)

focal adhesion (IEA)

glutamatergic synapse (ISO)

nucleoplasm (IEA,ISO)

phagocytic cup (IEA)

plasma membrane (IBA,IEA)

postsynaptic density (ISO)

presynaptic endocytic zone membrane (IDA)

ruffle membrane (IEA)

uropod (IEA)

Molecular Function

1-phosphatidylinositol-4-phosphate 5-kinase activity (IBA,IEA,ISO,ISS)

ATP binding (IEA)

kinase activity (IEA)

nucleotide binding (IEA)

phosphatidylinositol kinase activity (IEA)

protein binding (ISO)

talin binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

clathrin-dependent synaptic vesicle endocytosis (ISO)

E-cadherin signaling pathway (ISO)

endocytosis pathway (IEA)

epidermal growth factor/neuregulin signaling pathway (ISO)

Fc gamma receptor mediated signaling pathway (IEA)

inositol phosphate metabolic pathway (IEA)

N-cadherin signaling pathway (ISO)

phosphatidylinositol 3-kinase signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation
9.	Synaptic vesicle endocytosis.	Saheki Y and De Camilli P, Cold Spring Harb Perspect Biol. 2012 Sep 1;4(9):a005645. doi: 10.1101/cshperspect.a005645.
10.	PIP kinase Igamma is the major PI(4,5)P(2) synthesizing enzyme at the synapse.	Wenk MR, etal., Neuron. 2001 Oct 11;32(1):79-88.

Additional References at PubMed

PMID:9535851	PMID:12477932	PMID:12847086	PMID:14741049	PMID:15386003	PMID:15481814	PMID:20622009	PMID:22243752	PMID:23372168	PMID:25588945	PMID:30053369

Genomics

Comparative Map Data

Pip5k1c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,048,135 - 9,076,751 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	9,048,146 - 9,076,716 (-)	Ensembl				GRCr8
mRatBN7.2	7	8,397,406 - 8,426,030 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,397,406 - 8,425,988 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	11,282,985 - 11,310,700 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,158,469 - 13,186,184 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	11,026,097 - 11,053,748 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,267,207 - 11,294,291 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,267,218 - 11,294,249 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	11,433,945 - 11,461,690 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	9,881,767 - 9,909,651 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	6,586,357 - 6,614,359 (-)	NCBI		Celera
RGSC_v3.1	7	9,884,380 - 9,909,590 (-)	NCBI
Cytogenetic Map	7	q11	NCBI

PIP5K1C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	3,630,183 - 3,700,468 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	3,630,181 - 3,700,487 (-)	Ensembl			hg38	GRCh38
GRCh37	19	3,630,181 - 3,700,466 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	3,581,182 - 3,651,445 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	3,581,181 - 3,651,445	NCBI
Celera	19	3,567,024 - 3,637,289 (-)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	3,395,505 - 3,464,912 (-)	NCBI		HuRef
CHM1_1	19	3,629,775 - 3,700,077 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	3,608,310 - 3,678,870 (-)	NCBI		T2T-CHM13v2.0

Pip5k1c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	81,128,669 - 81,155,808 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	81,128,797 - 81,155,807 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	81,292,835 - 81,319,974 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	81,292,963 - 81,319,973 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	80,755,717 - 80,782,719 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	80,696,109 - 80,721,034 (+)	NCBI		MGSCv36	mm8
Celera	10	82,313,321 - 82,340,709 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Pip5k1c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	5,573,549 - 5,617,847 (-)	Ensembl
ChiLan1.0	NW_004955495	5,573,549 - 5,616,957 (-)	NCBI	ChiLan1.0	ChiLan1.0

PIP5K1C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	8,027,215 - 8,099,311 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	7,258,946 - 7,330,918 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	2,655,674 - 2,727,454 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	3,606,279 - 3,641,933 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	3,606,279 - 3,641,933 (-)	Ensembl			panPan2	panpan1.1

PIP5K1C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	55,751,055 - 55,801,740 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	55,751,158 - 55,799,160 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	55,476,548 - 55,527,110 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	56,411,292 - 56,461,900 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	56,411,262 - 56,459,374 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	55,467,880 - 55,517,545 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	55,950,522 - 56,001,018 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	56,149,116 - 56,199,654 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pip5k1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	215,746,672 - 215,763,912 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	2,068,952 - 2,091,956 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	2,070,873 - 2,088,144 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PIP5K1C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	74,977,274 - 75,046,895 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	74,977,266 - 75,046,898 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	75,568,768 - 75,615,099 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PIP5K1C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	3,389,575 - 3,454,108 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	3,389,056 - 3,453,836 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666081	4,797,989 - 5,073,344 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pip5k1c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624828	6,324,156 - 6,369,394 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pip5k1c
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	153,571,882 - 153,598,746 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pip5k1c
92 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	691
Count of miRNA genes:	283
Interacting mature miRNAs:	361
Transcripts:	ENSRNOT00000061159
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	1	23748937	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	29716167	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat

Markers in Region

RH139092

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	8,398,409 - 8,398,594 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	11,268,211 - 11,268,395	NCBI	Rnor6.0
Rnor_5.0	7	11,434,949 - 11,435,133	UniSTS	Rnor5.0
RGSC_v3.4	7	9,882,771 - 9,882,955	UniSTS	RGSC3.4
Celera	7	6,587,361 - 6,587,545	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001009967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001033970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY850259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC101909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB557931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB581409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB696331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK366332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000061159 ⟹ ENSRNOP00000057873

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	9,048,146 - 9,076,716 (-)	Ensembl
mRatBN7.2 Ensembl	7	8,397,417 - 8,425,988 (-)	Ensembl
Rnor_6.0 Ensembl	7	11,267,218 - 11,294,249 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088364 ⟹ ENSRNOP00000068990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	9,048,146 - 9,076,716 (-)	Ensembl
mRatBN7.2 Ensembl	7	8,397,406 - 8,425,988 (-)	Ensembl
Rnor_6.0 Ensembl	7	11,267,218 - 11,294,249 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095691 ⟹ ENSRNOP00000086276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,397,417 - 8,413,392 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107025 ⟹ ENSRNOP00000077990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,401,782 - 8,425,988 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115219 ⟹ ENSRNOP00000097462

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	9,048,146 - 9,076,716 (-)	Ensembl
mRatBN7.2 Ensembl	7	8,397,417 - 8,413,392 (-)	Ensembl

RefSeq Acc Id:

NM_001009967 ⟹ NP_001009967

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,048,135 - 9,076,716 (-)	NCBI
mRatBN7.2	7	8,397,406 - 8,425,988 (-)	NCBI
Rnor_6.0	7	11,267,207 - 11,294,249 (-)	NCBI
Rnor_5.0	7	11,433,945 - 11,461,690 (-)	NCBI
RGSC_v3.4	7	9,881,767 - 9,909,651 (-)	RGD
Celera	7	6,586,357 - 6,614,359 (-)	RGD

Sequence:

show sequence

GCCGAGCTCGGGTGCATCCTCGGGCCCGCCGCCGCCGCCGCTGCCGCCGGAGCGCGCGGCCATG
GAGCTAGAGGTGCCGGACGAGGCAGAGAGCGCCGAAGCAGGGGCCGTGACAGCGGAGGCGGCCT
GGTCTGCGGAGAGTGGGGCGGCGGCAGGTATGACCCAGAAGAAGGCTATCCTTGCAGAGGCCCC
GTTGGTGACAGGGCAGCCAGGCCCTGGCCATGGGAAGAAGCTGGGCCATCGAGGCGTGGATGCG
TCTGGAGAGACTACGTATAAGAAGACCACCTCGTCCACCCTGAAGGGTGCCATCCAACTGGGGA
TTGGGTACACGGTGGGCAACCTCAGCTCTAAGCCAGAACGCGATGTGCTCATGCAGGACTTCTA
TGTGGTGGAGAGCATCTTCTTTCCCAGCGAAGGGAGCAACCTTACCCCCGCCCACCACTTCCAG
GATTTCCGTTTCAAGACCTATGCACCTGTTGCCTTCCGTTACTTCCGGGAGCTCTTTGGTATCC
GTCCGGACGATTACTTGTACTCACTCTGCAACGAGCCACTCATTGAGCTGTCCAACCCGGGTGC
CAGTGGCTCCGTCTTCTACGTCACCAGCGATGACGAGTTCATCATTAAGACTGTCATGCACAAG
GAGGCGGAGTTCCTGCAGAAACTGCTGCCTGGCTACTATATGAACCTCAACCAGAACCCCCGGA
CCTTGCTGCCCAAGTTCTATGGGCTGTACTGTGTGCAGTCCGGCGGCAAGAACATTCGAGTGGT
GGTCATGAACAATGTGCTGCCCCGTGTCGTCAAGATGCACCTCAAGTTCGACCTCAAGGGCTCC
ACGTACAAGCGCAGGGCCAGCAAGAAGGAGAAGGAGAAGAGCCTGCCCACCTACAAGGACCTGG
ACTTCATGCAGGACATGCCAGAGGGGCTGCTACTGGACTCTGACACCTTTGGCGCCCTGGTCAA
GACGCTGCAGCGAGACTGCCTGGTGTTGGAGAGCTTCAAGATAATGGACTACAGCCTGCTGCTG
GGTGTGCACAACATTGACCAGCAGGAGCGGGAGCGCCAGGCCGAGGGCGCCCAGAGCAAGGCTG
ACGAGAAGCGGCCGGTGGCCCAGAAGGCCCTCTACTCCACAGCCATGGAGTCCATTCAGGGCGG
AGCTGCCCGTGGGGAGGCCATTGAGACAGATGACACGATGGGTGGGATCCCAGCCGTGAATGGG
CGTGGGGAGCGCTTGCTCCTACACATCGGAATCATTGACATTCTGCAGTCCTACAGGTTCATCA
AGAAGTTAGAACACACCTGGAAGGCCCTCGTCCACGATGGGGATACCGTCTCAGTCCACCGGCC
CAGCTTCTATGCCGAGCGCTTCTTCAAGTTCATGAGCAGCACGGTCTTCCGGAAGAGTTCCTCC
CTCAAGTCCTCTCCATCTAAGAAAGGGCGTGGCGCCCTGCTCGCAGTCAAGCCCCTGGGGCCCA
CCGCAGCCTTCTCAGCTAGCCAGATCCCCAGTGAGAGAGAGGATGTGCAGTACGACCTGCGGGG
GGCCCGCAGCTACCCCACGCTGGAGGATGAAGGCCGGCCTGACCTCCTGCCCTGCACCCCACCG
TCCTTTGAGGAAGCCACCACAGCCTCTATCGCCACCACCCTGTCATCCACCTCCCTCTCCATCC
CAGAGCGGTCCCCTTCAGACACATCAGAGCAGCCCCGGTACAGGCGGCGTACGCAGTCTTCAGG
CCAGGATGGCCGGCCCCAGGAGGAGCTGCATGCGGAAGACCTGCAGAAGATAACTGTGCAGGTG
GAGCCAGTGTGTGGTGTGGGGGTTGTCGTCCCCAAGGAGCAGGGTGCAGGAGTGGAGGTTCCCC
CATCTGGGGCATCGGCAGCAGCCACGGTGGAAGTAGACGCTGCCAGCCAGGCCTCAGAGCCCGC
CAGCCAAGCCTCTGATGAGGAAGATGCGCCTTCCACAGACATCTATTTTTTCGCCCACGGGAGA
TACTGGCTTTTCTCTCCCCGTCGTCGCCGACTGCGGGCCGTGACACCAAGCCACACAGGCGCTC
CCACCGACGAGAGGAGCTGGGTGTACTCCCCGCTTCACTATAGCGCACGGCCCGCCTCCGACGG
CGAGAGCGACACATAACTTCTATGCAGTCCCCAATCTGGAGCCCAGCGTCCTTCTGCCACCCCA
GCCACTTCCTGGAGGCGCTGCCCCCCACTGGGGCTCAGAGCTCAGCGACATCACCCCGATGGCC
CTGGCCCGACCTTGTTCTCTCCCTCCCCACTGACGGACGCCATTGGCCAGGCCCAGCCCCAGGA
TAGGTCAGGCCTCCATCTGCTGCTACCTGTGCCTGTTGGGGCGGCAAGATTTGGAGTGCACATT
CTGTATTTATTTTGGGTCCACCCCTCCCCCCCCTTTTTTTGGACGGAGAGGGAGCACAGGAGTG
TTTTTCTAGGAAAAAGACAAGACACAAAAAACCCAGGAAGAGGCTGCAGCCACCAGCCTTGGTG
GATCAGGTTCTATGTGTCTCAGTACCCTGGGGACAGTGGCCAGGTAGCTCCAGTAAACCCCACA
CACTCCAGAGCTCGTTATGACTGGCAGAGGAGACAGGCCCTGGAGCCGCGGCTTGCCGTCCCGG
GTCTGTGTTCCTGAGTTGGGTCGCCTCAACAGAGCCCCTCCTTCACCTCAGGTTTGGGACCCAA
GCAAACCAGGACTAGTCATGCCCTGTGGTCTTTCTGCATCTGTTTACTGCCACTGGAAGGATGT
CCCTACGCATGTCTTGTGGCTACAATCACCTGATGCTGACTGGGAGGTTCCATATTGTCTGCCT
CTCATCCCCATGAAACCCTGAGCTGGTGCTGTGGGTCCCCTCAACTCCCAGGGAAATCTCTGCC
CCCAAGAAGGGCACAGCCAGGCTTCAGGCTGCAGAGTGAGAGTTTGGTCCTTACCTTGGTTGAA
GAGAGTAAGAAAGGGACATCACCTCAGCAAAGCCAACCATATCTACTGACCACCAGGGAGATCG
CAGCAAGCATTCTCCGCTGGGCAGACCCCAGTGTGTTGGGTGCAGTCCAGCTATGCTATGCCTC
TGTTTCGTGGATGTTCCACCCACGGTAGGCGGAGTCAAGCAGGAATGTTCTGAAAGCACGCAGC
CACAGGACACAACCTTTGGGTCAGCTTCATGGGCCTCTTGGGTTGCACCTTCAGGGACAGGGGC
TATCTGGCTTCCAAGGACTGTAGCAGCCTGTGGAGGCAGTGTGGAGCATGACACTGCCATCGTG
GCCAGAAAAGGCATGGCCAGGGAGAGGACCCCTGGAGGGGGAGAGTAGGAGAGATGGGCAGATG
CCTGTCCCTGGACCTCACATCAGCCCCCTTCCTGTTGAGGAATGCACAGTGAACACACCGTGGG
GAGCTGCTGCATGAGTTAACTAAGGGGTTGGGGCTTGCACACACCAGGCAAGCATGTCACACCT
GCCATCCCTGAACTTGGAAAGTTAAGGCAGGAGGGTTGTGGCAAGTTCCAGGCTCGCGTGGGTT
AGAGTAAAACGAGACCAAAAGGAAAAAAAAAATCACAGGGCTGGCCCTACCACTCAGTGGGCAG
AACTCACCCAGCTGCATAAACCCTGAGTTCCATTCCAGCACCACAGAAACCAGATTGGGAGGCA
CACAGCTGCCATCCCTCGCTTGGGAAACAGGCAGAAAGAGCAGGAGTGCAAGGCCATCCTTGGC
TGTATCCAGTTGAAGGCCAGCCTGGGCTACATGAGACTCTCTCAAAAGAGAATCTGTAAATATC
TTCGTGACCCCACCTCCCATCCTGTTCTCTATGATGGCCGCTATCGCCCCACCGTGGACGGTGT
GTGAACTGTACTGTAAAGGCCTGCCTGGGGGCGCCTCCAAGGCTGAAGAGGTGCCCTCCCCGGC
CCGCCTCTGTTCTCCTCAAGCCATCCCAGCAAGTCCCCTGTCCAGCCCCACACCAACCTCAGTG
CAATATGCCCTTCCCGTGGGGTCCCCTGGCACGGTACTGTCTCTGCAGCCCCTTGTCTCTTACC
CCTAGCTCCTCTCTCCCAGTGGTTAAAAATCACATCGCACATCCTCCCCCACATCCTGTTTTTA
TTGTTGAATCCATTCTGTAAACTACAAACCTCCTGTGTCTTACTCATCAGGAATAGGGATCCCG
GGTCCTCAGCCCATGTGATCTGGTGTTTGACAATCCAAGTACAGTGTCCCCTTGGCACCAACCA
GTGGGGCCTGTCCCTCCAGCGCAGCCGGCAAATGTATGCAGCCCAGGTTCCCGCTCCACCTGTC
ACACCCCTCTTTTTGAGATCTGTAATAAATCTCTAATAAGAAACAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001033970 ⟹ NP_001029142

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,048,135 - 9,076,716 (-)	NCBI
mRatBN7.2	7	8,397,406 - 8,425,988 (-)	NCBI
Rnor_6.0	7	11,267,207 - 11,294,249 (-)	NCBI
Rnor_5.0	7	11,433,945 - 11,461,690 (-)	NCBI
RGSC_v3.4	7	9,881,767 - 9,909,651 (-)	RGD
Celera	7	6,586,357 - 6,614,359 (-)	RGD

Sequence:

show sequence

GCCGAGCTCGGGTGCATCCTCGGGCCCGCCGCCGCCGCCGCTGCCGCCGGAGCGCGCGGCCATG
GAGCTAGAGGTGCCGGACGAGGCAGAGAGCGCCGAAGCAGGGGCCGTGACAGCGGAGGCGGCCT
GGTCTGCGGAGAGTGGGGCGGCGGCAGGTATGACCCAGAAGAAGGCTATCCTTGCAGAGGCCCC
GTTGGTGACAGGGCAGCCAGGCCCTGGCCATGGGAAGAAGCTGGGCCATCGAGGCGTGGATGCG
TCTGGAGAGACTACGTATAAGAAGACCACCTCGTCCACCCTGAAGGGTGCCATCCAACTGGGGA
TTGGGTACACGGTGGGCAACCTCAGCTCTAAGCCAGAACGCGATGTGCTCATGCAGGACTTCTA
TGTGGTGGAGAGCATCTTCTTTCCCAGCGAAGGGAGCAACCTTACCCCCGCCCACCACTTCCAG
GATTTCCGTTTCAAGACCTATGCACCTGTTGCCTTCCGTTACTTCCGGGAGCTCTTTGGTATCC
GTCCGGACGATTACTTGTACTCACTCTGCAACGAGCCACTCATTGAGCTGTCCAACCCGGGTGC
CAGTGGCTCCGTCTTCTACGTCACCAGCGATGACGAGTTCATCATTAAGACTGTCATGCACAAG
GAGGCGGAGTTCCTGCAGAAACTGCTGCCTGGCTACTATATGAACCTCAACCAGAACCCCCGGA
CCTTGCTGCCCAAGTTCTATGGGCTGTACTGTGTGCAGTCCGGCGGCAAGAACATTCGAGTGGT
GGTCATGAACAATGTGCTGCCCCGTGTCGTCAAGATGCACCTCAAGTTCGACCTCAAGGGCTCC
ACGTACAAGCGCAGGGCCAGCAAGAAGGAGAAGGAGAAGAGCCTGCCCACCTACAAGGACCTGG
ACTTCATGCAGGACATGCCAGAGGGGCTGCTACTGGACTCTGACACCTTTGGCGCCCTGGTCAA
GACGCTGCAGCGAGACTGCCTGGTGTTGGAGAGCTTCAAGATAATGGACTACAGCCTGCTGCTG
GGTGTGCACAACATTGACCAGCAGGAGCGGGAGCGCCAGGCCGAGGGCGCCCAGAGCAAGGCTG
ACGAGAAGCGGCCGGTGGCCCAGAAGGCCCTCTACTCCACAGCCATGGAGTCCATTCAGGGCGG
AGCTGCCCGTGGGGAGGCCATTGAGACAGATGACACGATGGGTGGGATCCCAGCCGTGAATGGG
CGTGGGGAGCGCTTGCTCCTACACATCGGAATCATTGACATTCTGCAGTCCTACAGGTTCATCA
AGAAGTTAGAACACACCTGGAAGGCCCTCGTCCACGATGGGGATACCGTCTCAGTCCACCGGCC
CAGCTTCTATGCCGAGCGCTTCTTCAAGTTCATGAGCAGCACGGTCTTCCGGAAGAGTTCCTCC
CTCAAGTCCTCTCCATCTAAGAAAGGGCGTGGCGCCCTGCTCGCAGTCAAGCCCCTGGGGCCCA
CCGCAGCCTTCTCAGCTAGCCAGATCCCCAGTGAGAGAGAGGATGTGCAGTACGACCTGCGGGG
GGCCCGCAGCTACCCCACGCTGGAGGATGAAGGCCGGCCTGACCTCCTGCCCTGCACCCCACCG
TCCTTTGAGGAAGCCACCACAGCCTCTATCGCCACCACCCTGTCATCCACCTCCCTCTCCATCC
CAGAGCGGTCCCCTTCAGACACATCAGAGCAGCCCCGGTACAGGCGGCGTACGCAGTCTTCAGG
CCAGGATGGCCGGCCCCAGGAGGAGCTGCATGCGGAAGACCTGCAGAAGATAACTGTGCAGGTG
GAGCCAGTGTGTGGTGTGGGGGTTGTCGTCCCCAAGGAGCAGGGTGCAGGAGTGGAGGTTCCCC
CATCTGGGGCATCGGCAGCAGCCACGGTGGAAGTAGACGCTGCCAGCCAGGCCTCAGAGCCCGC
CAGCCAAGCCTCTGATGAGGAAGATGCGCCTTCCACAGACATCTATTTTTAACTTCTATGCAGT
CCCCAATCTGGAGCCCAGCGTCCTTCTGCCACCCCAGCCACTTCCTGGAGGCGCTGCCCCCCAC
TGGGGCTCAGAGCTCAGCGACATCACCCCGATGGCCCTGGCCCGACCTTGTTCTCTCCCTCCCC
ACTGACGGACGCCATTGGCCAGGCCCAGCCCCAGGATAGGTCAGGCCTCCATCTGCTGCTACCT
GTGCCTGTTGGGGCGGCAAGATTTGGAGTGCACATTCTGTATTTATTTTGGGTCCACCCCTCCC
CCCCCTTTTTTTGGACGGAGAGGGAGCACAGGAGTGTTTTTCTAGGAAAAAGACAAGACACAAA
AAACCCAGGAAGAGGCTGCAGCCACCAGCCTTGGTGGATCAGGTTCTATGTGTCTCAGTACCCT
GGGGACAGTGGCCAGGTAGCTCCAGTAAACCCCACACACTCCAGAGCTCGTTATGACTGGCAGA
GGAGACAGGCCCTGGAGCCGCGGCTTGCCGTCCCGGGTCTGTGTTCCTGAGTTGGGTCGCCTCA
ACAGAGCCCCTCCTTCACCTCAGGTTTGGGACCCAAGCAAACCAGGACTAGTCATGCCCTGTGG
TCTTTCTGCATCTGTTTACTGCCACTGGAAGGATGTCCCTACGCATGTCTTGTGGCTACAATCA
CCTGATGCTGACTGGGAGGTTCCATATTGTCTGCCTCTCATCCCCATGAAACCCTGAGCTGGTG
CTGTGGGTCCCCTCAACTCCCAGGGAAATCTCTGCCCCCAAGAAGGGCACAGCCAGGCTTCAGG
CTGCAGAGTGAGAGTTTGGTCCTTACCTTGGTTGAAGAGAGTAAGAAAGGGACATCACCTCAGC
AAAGCCAACCATATCTACTGACCACCAGGGAGATCGCAGCAAGCATTCTCCGCTGGGCAGACCC
CAGTGTGTTGGGTGCAGTCCAGCTATGCTATGCCTCTGTTTCGTGGATGTTCCACCCACGGTAG
GCGGAGTCAAGCAGGAATGTTCTGAAAGCACGCAGCCACAGGACACAACCTTTGGGTCAGCTTC
ATGGGCCTCTTGGGTTGCACCTTCAGGGACAGGGGCTATCTGGCTTCCAAGGACTGTAGCAGCC
TGTGGAGGCAGTGTGGAGCATGACACTGCCATCGTGGCCAGAAAAGGCATGGCCAGGGAGAGGA
CCCCTGGAGGGGGAGAGTAGGAGAGATGGGCAGATGCCTGTCCCTGGACCTCACATCAGCCCCC
TTCCTGTTGAGGAATGCACAGTGAACACACCGTGGGGAGCTGCTGCATGAGTTAACTAAGGGGT
TGGGGCTTGCACACACCAGGCAAGCATGTCACACCTGCCATCCCTGAACTTGGAAAGTTAAGGC
AGGAGGGTTGTGGCAAGTTCCAGGCTCGCGTGGGTTAGAGTAAAACGAGACCAAAAGGAAAAAA
AAAATCACAGGGCTGGCCCTACCACTCAGTGGGCAGAACTCACCCAGCTGCATAAACCCTGAGT
TCCATTCCAGCACCACAGAAACCAGATTGGGAGGCACACAGCTGCCATCCCTCGCTTGGGAAAC
AGGCAGAAAGAGCAGGAGTGCAAGGCCATCCTTGGCTGTATCCAGTTGAAGGCCAGCCTGGGCT
ACATGAGACTCTCTCAAAAGAGAATCTGTAAATATCTTCGTGACCCCACCTCCCATCCTGTTCT
CTATGATGGCCGCTATCGCCCCACCGTGGACGGTGTGTGAACTGTACTGTAAAGGCCTGCCTGG
GGGCGCCTCCAAGGCTGAAGAGGTGCCCTCCCCGGCCCGCCTCTGTTCTCCTCAAGCCATCCCA
GCAAGTCCCCTGTCCAGCCCCACACCAACCTCAGTGCAATATGCCCTTCCCGTGGGGTCCCCTG
GCACGGTACTGTCTCTGCAGCCCCTTGTCTCTTACCCCTAGCTCCTCTCTCCCAGTGGTTAAAA
ATCACATCGCACATCCTCCCCCACATCCTGTTTTTATTGTTGAATCCATTCTGTAAACTACAAA
CCTCCTGTGTCTTACTCATCAGGAATAGGGATCCCGGGTCCTCAGCCCATGTGATCTGGTGTTT
GACAATCCAAGTACAGTGTCCCCTTGGCACCAACCAGTGGGGCCTGTCCCTCCAGCGCAGCCGG
CAAATGTATGCAGCCCAGGTTCCCGCTCCACCTGTCACACCCCTCTTTTTGAGATCTGTAATAA
ATCTCTAATAAGAAACAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006240935 ⟹ XP_006240997

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,048,137 - 9,076,747 (-)	NCBI
mRatBN7.2	7	8,397,406 - 8,426,028 (-)	NCBI
Rnor_6.0	7	11,267,207 - 11,294,290 (-)	NCBI
Rnor_5.0	7	11,433,945 - 11,461,690 (-)	NCBI

Sequence:

show sequence

CGCCCTATAGTGCGGGCGGCGCTTGTTGTTCAGCGGCGGCGGCCGAGCTCGGGTGCATCCTCGG
GCCCGCCGCCGCCGCCGCTGCCGCCGGAGCGCGCGGCCATGGAGCTAGAGGTGCCGGACGAGGC
AGAGAGCGCCGAAGCAGGGGCCGTGACAGCGGAGGCGGCCTGGTCTGCGGAGAGTGGGGCGGCG
GCAGGTATGACCCAGAAGAAGGCTATCCTTGCAGAGGCCCCGTTGGTGACAGGGCAGCCAGGCC
CTGGCCATGGGAAGAAGCTGGGCCATCGAGGCGTGGATGCGTCTGGAGAGACTACGTATAAGAA
GACCACCTCGTCCACCCTGAAGGGTGCCATCCAACTGGGGATTGGGTACACGGTGGGCAACCTC
AGCTCTAAGCCAGAACGCGATGTGCTCATGCAGGACTTCTATGTGGTGGAGAGCATCTTCTTTC
CCAGCGAAGGGAGCAACCTTACCCCCGCCCACCACTTCCAGGATTTCCGTTTCAAGACCTATGC
ACCTGTTGCCTTCCGTTACTTCCGGGAGCTCTTTGGTATCCGTCCGGACGATTACTTGTACTCA
CTCTGCAACGAGCCACTCATTGAGCTGTCCAACCCGGGTGCCAGTGGCTCCGTCTTCTACGTCA
CCAGCGATGACGAGTTCATCATTAAGACTGTCATGCACAAGGAGGCGGAGTTCCTGCAGAAACT
GCTGCCTGGCTACTATATGAACCTCAACCAGAACCCCCGGACCTTGCTGCCCAAGTTCTATGGG
CTGTACTGTGTGCAGTCCGGCGGCAAGAACATTCGAGTGGTGGTCATGAACAATGTGCTGCCCC
GTGTCGTCAAGATGCACCTCAAGTTCGACCTCAAGGGCTCCACGTACAAGCGCAGGGCCAGCAA
GAAGGAGAAGGAGAAGAGCCTGCCCACCTACAAGGACCTGGACTTCATGCAGGACATGCCAGAG
GGGCTGCTACTGGACTCTGACACCTTTGGCGCCCTGGTCAAGACGCTGCAGCGAGACTGCCTGG
TGTTGGAGAGCTTCAAGATAATGGACTACAGCCTGCTGCTGGGTGTGCACAACATTGACCAGCA
GGAGCGGGAGCGCCAGGCCGAGGGCGCCCAGAGCAAGGCTGACGAGAAGCGGCCGGTGGCCCAG
AAGGCCCTCTACTCCACAGCCATGGAGTCCATTCAGGGCGGAGCTGCCCGTGGGGAGGCCATTG
AGACAGATGACACGATGGGTGGGATCCCAGCCGTGAATGGGCGTGGGGAGCGCTTGCTCCTACA
CATCGGAATCATTGACATTCTGCAGTCCTACAGGTTCATCAAGAAGTTAGAACACACCTGGAAG
GCCCTCGTCCACGATGGGGATACCGTCTCAGTCCACCGGCCCAGCTTCTATGCCGAGCGCTTCT
TCAAGTTCATGAGCAGCACGGTCTTCCGGAAGAGTTCCTCCCTCAAGTCCTCTCCATCTAAGAA
AGGGCGTGGCGCCCTGCTCGCAGTCAAGCCCCTGGGGCCCACCGCAGCCTTCTCAGCTAGCCAG
ATCCCCAGTGAGAGAGAGGATGTGCAGTACGACCTGCGGGGAGCCCGCAGCTACCCCACGCTGG
AGGATGAAGGCCGGCCTGACCTCCTGCCCTGCACCCCACCGTCCTTTGAGGAAGCCACCACAGC
CTCTATCGCCACCACCCTGTCATCCACCTCCCTCTCCATCCCAGAGCGGTCCCCTTCAGACACA
TCAGAGCAGCCCCGGTACAGGCGGCGTACGCAGTCTTCAGGCCAGGATGGCCGGCCCCAGGAGG
AGCTGCATGCGGAAGACCTGCAGAAGATAACTGTGCAGGTGGAGCCAGTGTGTGGTGTGGGGGT
TGTCGTCCCCAAGGAGCAGGGTGCAGGAGTGGAGGTTCCCCCATCTGGGGCATCGGCAGCAGCC
ACGGTGGAAGTAGACGCTGCCAGCCAGGCCTCAGAGCCCGCCAGCCAAGCCTCTGATGAGGAAG
ATGCGCCTTCCACAGACATCTATTTTCCCACCGACGAGAGGAGCTGGGTGTACTCCCCGCTTCA
CTATAGCGCACGGCCCGCCTCCGACGGCGAGAGCGACACATAACTTCTATGCAGTCCCCAATCT
GGAGCCCAGCGTCCTTCTGCCACCCCAGCCACTTCCTGGAGGCGCTGCCCCCCACTGGGGCTCA
GAGCTCAGCGACATCACCCCGATGGCCCTGGCCCGACCTTGTTCTCTCCCTCCCCACTGACGGA
CGCCATTGGCCAGGCCCAGCCCCAGGATAGGTCAGGCCTCCATCTGCTGCTACCTGTGCCTGTT
GGGGCGGCAAGATTTGGAGTGCACATTCTGTATTTATTTTGGGTCCACCCCTCCCCCCCCTTTT
TTTGGACGGAGAGGGAGCACAGGAGTGTTTTTCTAGGAAAAAGACAAGACACAAAAAACCCAGG
AAGAGGCTGCAGCCACCAGCCTTGGTGGATCAGGTTCTATGTGTCTCAGTACCCTGGGGACAGT
GGCCAGGTAGCTCCAGTAAACCCCACACACTCCAGAGCTCGTTATGACTGGCAGAGGAGACAGG
CCCTGGAGCCGCGGCTTGCCGTCCCGGGTCTGTGTTCCTGAGTTGGGTCGCCTCAACAGAGCCC
CTCCTTCACCTCAGGTTTGGGACCCAAGCAAACCAGGACTAGTCATGCCCTGTGGTCTTTCTGC
ATCTGTTTACTGCCACTGGAAGGATGTCCCTACGCATGTCTTGTGGCTACAATCACCTGATGCT
GACTGGGAGGTTCCATATTGTCTGCCTCTCATCCCCATGAAACCCTGAGCTGGTGCTGTGGGTC
CCCTCAACTCCCAGGGAAATCTCTGCCCCCAAGAAGGGCACAGCCAGGCTTCAGGCTGCAGAGT
GAGAGTTTGGTCCTTACCTTGGTTGAAGAGAGTAAGAAAGGGACATCACCTCAGCAAAGCCAAC
CATATCTACTGACCACCAGGGAGATCGCAGCAAGCATTCTCCACTGGGCAGACCCCAGTGTGTT
GGGTGCAGTCCAGCTATGCTATGCCTCTGTTTCGTGGATGTTCCACCCACGGTAGGCGGAGTCA
AGCAGGAATGTTCTGAAAGCACGCAGCCACAGGACACAACCTTTGGGTCAGCTTCATGGGCCTC
TTGGGTTGCACCTTCAGGGACAGGGGCTATCTGGCTTCCAAGGACTGTAGCAGCCTGTGGAGGC
AGTGTGGAGCATGACACTGCCATCGTGGCCAGAAAAGGCATGGCCAGGGAGAGGACCCCTGGAG
GGGGAGAGTAGGAGAGATGGGCAGATGCCTGTCCCTGGACCTCACATCAGCCCCCTTCCTGTTG
AGGAATGCACAGTGAACACACCGTGGGGAGCTGCTGCATGAGTTAACTAAGGGGTTGGGGCTTG
CACACACCAGGCAAGCATGTCACACCTGCCATCCCTGAACTTGGAAAGTTAAGGCAGGAGGGTT
GTGGCAAGTTCCAGGCTCGCGTGGGTTAGAGTAAAACGAGACCAAAAGGAAAAAAAAAATCACA
GGGCTGGCCCTACCACTCAGTGGGCAGAACTCACCCAGCTGCATAAACCCTGAGTTCCATTCCA
GCACCACAGAAACCAGATTGGGAGGCACACAGCTGCCATCCCTCGCTTGGGAAACAGGCAGAAA
GAGCAGGAGTGCAAGGCCATCCTTGGCTGTATCCAGTTGAAGGCCAGCCTGGGCTACATGAGAC
TCTCTCAAAAGAGAATCTGTAAATATCTTCGTGACCCCACCTCCCATCCTGTTCTCTATGATGG
CCGCTATCGCCCCACCGTGGACGGTGTGTGAACTGTACTGTAAAGGCCTGCCTGGGGGCGCCTC
CAAGGCTGAAGAGGTGCCCTCCCCGGCCCGCCTCTGTTCTCCTCAAGCCATCCCAGCAAGTCCC
CTGTCCAGCCCCACACCAACCTCAGTGCAATATGCCCTTCCCGTGGGGTCCCCTGGCACGGTAC
TGTCTCTGCAGCCCCTTGTCTCTTACCCCTAGCTCCTCTCTCCCAGTGGTTAAAAATCACATCG
CACATCCTCCCCCACATCCTGTTTTTATTGTTGAATCCATTCTGTAAACTACAAACCTCCTGTG
TCTTACTCATCAGGAATAGGGATCCCGGGTCCTCAGCCCATGTGATCTGGTGTTTGACAATCCA
AGTACAGTGTCCCCTTGGCACCAACCAGTGGGGCCTGTCCCTCCAGCGCAGCCGGCAAATGTAT
GCAGCCCAGGTTCCCGCTCCACCTGTCACACCCCTCTTTTTGAGATCTGTAATAAATCTCTAAT
AAGAAACA

hide sequence

RefSeq Acc Id:

XM_008765101 ⟹ XP_008763323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,048,137 - 9,076,748 (-)	NCBI
mRatBN7.2	7	8,397,406 - 8,426,029 (-)	NCBI
Rnor_6.0	7	11,267,207 - 11,294,291 (-)	NCBI

Sequence:

show sequence

CCGCCCTATAGTGCGGGCGGCGCTTGTTGTTCAGCGGCGGCGGCCGAGCTCGGGTGCATCCTCG
GGCCCGCCGCCGCCGCCGCTGCCGCCGGAGCGCGCGGCCATGGAGCTAGAGGTGCCGGACGAGG
CAGAGAGCGCCGAAGCAGGGGCCGTGACAGCGGAGGCGGCCTGGTCTGCGGAGAGTGGGGCGGC
GGCAGGTATGACCCAGAAGAAGGCTATCCTTGCAGAGGCCCCGTTGGTGACAGGGCAGCCAGGC
CCTGGCCATGGGAAGAAGCTGGGCCATCGAGGCGTGGATGCGTCTGGAGAGACTACGTATAAGA
AGACCACCTCGTCCACCCTGAAGGGTGCCATCCAACTGGGGATTGGGTACACGGTGGGCAACCT
CAGCTCTAAGCCAGAACGCGATGTGCTCATGCAGGACTTCTATGTGGTGGAGAGCATCTTCTTT
CCCAGCGAAGGGAGCAACCTTACCCCCGCCCACCACTTCCAGGATTTCCGTTTCAAGACCTATG
CACCTGTTGCCTTCCGTTACTTCCGGGAGCTCTTTGGTATCCGTCCGGACGATTACTTGTACTC
ACTCTGCAACGAGCCACTCATTGAGCTGTCCAACCCGGGTGCCAGTGGCTCCGTCTTCTACGTC
ACCAGCGATGACGAGTTCATCATTAAGACTGTCATGCACAAGGAGGCGGAGTTCCTGCAGAAAC
TGCTGCCTGGCTACTATATGAACCTCAACCAGAACCCCCGGACCTTGCTGCCCAAGTTCTATGG
GCTGTACTGTGTGCAGTCCGGCGGCAAGAACATTCGAGTGGTGGTCATGAACAATGTGCTGCCC
CGTGTCGTCAAGATGCACCTCAAGTTCGACCTCAAGGGCTCCACGTACAAGCGCAGGGCCAGCA
AGAAGGAGAAGGAGAAGAGCCTGCCCACCTACAAGGACCTGGACTTCATGCAGGACATGCCAGA
GGGGCTGCTACTGGACTCTGACACCTTTGGCGCCCTGGTCAAGACGCTGCAGCGAGACTGCCTG
GTGTTGGAGAGCTTCAAGATAATGGACTACAGCCTGCTGCTGGGTGTGCACAACATTGACCAGC
AGGAGCGGGAGCGCCAGGCCGAGGGCGCCCAGAGCAAGGCTGACGAGAAGCGGCCGGTGGCCCA
GAAGGCCCTCTACTCCACAGCCATGGAGTCCATTCAGGGCGGAGCTGCCCGTGGGGAGGCCATT
GAGACAGATGACACGATGGGTGGGATCCCAGCCGTGAATGGGCGTGGGGAGCGCTTGCTCCTAC
ACATCGGAATCATTGACATTCTGCAGTCCTACAGGTTCATCAAGAAGTTAGAACACACCTGGAA
GGCCCTCGTCCACGATGGGGATACCGTCTCAGTCCACCGGCCCAGCTTCTATGCCGAGCGCTTC
TTCAAGTTCATGAGCAGCACGGTCTTCCGGAAGAGTTCCTCCCTCAAGTCCTCTCCATCTAAGA
AAGGGCGTGGCGCCCTGCTCGCAGTCAAGCCCCTGGGGCCCACCGCAGCCTTCTCAGCTAGCCA
GATCCCCAGTGAGAGAGAGGATGTGCAGTACGACCTGCGGGGAGCCCGCAGCTACCCCACGCTG
GAGGATGAAGGCCGGCCTGACCTCCTGCCCTGCACCCCACCGTCCTTTGAGGAAGCCACCACAG
CCTCTATCGCCACCACCCTGTCATCCACCTCCCTCTCCATCCCAGAGCGGTCCCCTTCAGACAC
ATCAGAGCAGCCCCGGTACAGGCGGCGTACGCAGTCTTCAGGCCAGGATGGCCGGCCCCAGGAG
GAGCTGCATGCGGAAGACCTGCAGAAGATAACTGTGCAGGTGGAGCCAGTGTGTGGTGTGGGGG
TTGTCGTCCCCAAGGAGCAGGGTGCAGGAGTGGAGGTTCCCCCATCTGGGGCATCGGCAGCAGC
CACGGTGGAAGTAGACGCTGCCAGCCAGGCCTCAGAGCCCGCCAGCCAAGCCTCTGATGAGGAA
GATGCGCCTTCCACAGACATCTATTTTTTCGCCCACGGGAGATACTGGCTTTTCTCTCCCCGTC
GTCGCCAACTGCGGGCCGTGACACCAAGCCACACAGGCGCTCCCACCGACGAGAGGAGCTGGGT
GTACTCCCCGCTTCACTATAGCGCACGGCCCGCCTCCGACGGCGAGAGCGACACAGTAAGTCCC
CAGTAACTTCTATGCAGTCCCCAATCTGGAGCCCAGCGTCCTTCTGCCACCCCAGCCACTTCCT
GGAGGCGCTGCCCCCCACTGGGGCTCAGAGCTCAGCGACATCACCCCGATGGCCCTGGCCCGAC
CTTGTTCTCTCCCTCCCCACTGACGGACGCCATTGGCCAGGCCCAGCCCCAGGATAGGTCAGGC
CTCCATCTGCTGCTACCTGTGCCTGTTGGGGCGGCAAGATTTGGAGTGCACATTCTGTATTTAT
TTTGGGTCCACCCCTCCCCCCCCTTTTTTTGGACGGAGAGGGAGCACAGGAGTGTTTTTCTAGG
AAAAAGACAAGACACAAAAAACCCAGGAAGAGGCTGCAGCCACCAGCCTTGGTGGATCAGGTTC
TATGTGTCTCAGTACCCTGGGGACAGTGGCCAGGTAGCTCCAGTAAACCCCACACACTCCAGAG
CTCGTTATGACTGGCAGAGGAGACAGGCCCTGGAGCCGCGGCTTGCCGTCCCGGGTCTGTGTTC
CTGAGTTGGGTCGCCTCAACAGAGCCCCTCCTTCACCTCAGGTTTGGGACCCAAGCAAACCAGG
ACTAGTCATGCCCTGTGGTCTTTCTGCATCTGTTTACTGCCACTGGAAGGATGTCCCTACGCAT
GTCTTGTGGCTACAATCACCTGATGCTGACTGGGAGGTTCCATATTGTCTGCCTCTCATCCCCA
TGAAACCCTGAGCTGGTGCTGTGGGTCCCCTCAACTCCCAGGGAAATCTCTGCCCCCAAGAAGG
GCACAGCCAGGCTTCAGGCTGCAGAGTGAGAGTTTGGTCCTTACCTTGGTTGAAGAGAGTAAGA
AAGGGACATCACCTCAGCAAAGCCAACCATATCTACTGACCACCAGGGAGATCGCAGCAAGCAT
TCTCCACTGGGCAGACCCCAGTGTGTTGGGTGCAGTCCAGCTATGCTATGCCTCTGTTTCGTGG
ATGTTCCACCCACGGTAGGCGGAGTCAAGCAGGAATGTTCTGAAAGCACGCAGCCACAGGACAC
AACCTTTGGGTCAGCTTCATGGGCCTCTTGGGTTGCACCTTCAGGGACAGGGGCTATCTGGCTT
CCAAGGACTGTAGCAGCCTGTGGAGGCAGTGTGGAGCATGACACTGCCATCGTGGCCAGAAAAG
GCATGGCCAGGGAGAGGACCCCTGGAGGGGGAGAGTAGGAGAGATGGGCAGATGCCTGTCCCTG
GACCTCACATCAGCCCCCTTCCTGTTGAGGAATGCACAGTGAACACACCGTGGGGAGCTGCTGC
ATGAGTTAACTAAGGGGTTGGGGCTTGCACACACCAGGCAAGCATGTCACACCTGCCATCCCTG
AACTTGGAAAGTTAAGGCAGGAGGGTTGTGGCAAGTTCCAGGCTCGCGTGGGTTAGAGTAAAAC
GAGACCAAAAGGAAAAAAAAAATCACAGGGCTGGCCCTACCACTCAGTGGGCAGAACTCACCCA
GCTGCATAAACCCTGAGTTCCATTCCAGCACCACAGAAACCAGATTGGGAGGCACACAGCTGCC
ATCCCTCGCTTGGGAAACAGGCAGAAAGAGCAGGAGTGCAAGGCCATCCTTGGCTGTATCCAGT
TGAAGGCCAGCCTGGGCTACATGAGACTCTCTCAAAAGAGAATCTGTAAATATCTTCGTGACCC
CACCTCCCATCCTGTTCTCTATGATGGCCGCTATCGCCCCACCGTGGACGGTGTGTGAACTGTA
CTGTAAAGGCCTGCCTGGGGGCGCCTCCAAGGCTGAAGAGGTGCCCTCCCCGGCCCGCCTCTGT
TCTCCTCAAGCCATCCCAGCAAGTCCCCTGTCCAGCCCCACACCAACCTCAGTGCAATATGCCC
TTCCCGTGGGGTCCCCTGGCACGGTACTGTCTCTGCAGCCCCTTGTCTCTTACCCCTAGCTCCT
CTCTCCCAGTGGTTAAAAATCACATCGCACATCCTCCCCCACATCCTGTTTTTATTGTTGAATC
CATTCTGTAAACTACAAACCTCCTGTGTCTTACTCATCAGGAATAGGGATCCCGGGTCCTCAGC
CCATGTGATCTGGTGTTTGACAATCCAAGTACAGTGTCCCCTTGGCACCAACCAGTGGGGCCTG
TCCCTCCAGCGCAGCCGGCAAATGTATGCAGCCCAGGTTCCCGCTCCACCTGTCACACCCCTCT
TTTTGAGATCTGTAATAAATCTCTAATAAGAAACA

hide sequence

RefSeq Acc Id:

XM_008765103 ⟹ XP_008763325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,048,137 - 9,076,751 (-)	NCBI
mRatBN7.2	7	8,397,406 - 8,426,028 (-)	NCBI
Rnor_6.0	7	11,267,207 - 11,294,290 (-)	NCBI

Sequence:

show sequence

CGCCCTATAGTGCGGGCGGCGCTTGTTGTTCAGCGGCGGCGGCCGAGCTCGGGTGCATCCTCGG
GCCCGCCGCCGCCGCCGCTGCCGCCGGAGCGCGCGGCCATGGAGCTAGAGGTGCCGGACGAGGC
AGAGAGCGCCGAAGCAGGGGCCGTGACAGCGGAGGCGGCCTGGTCTGCGGAGAGTGGGGCGGCG
GCAGGTATGACCCAGAAGAAGGCTATCCTTGCAGAGGCCCCGTTGGTGACAGGGCAGCCAGGCC
CTGGCCATGGGAAGAAGCTGGGCCATCGAGGCGTGGATGCGTCTGGAGAGACTACGTATAAGAA
GACCACCTCGTCCACCCTGAAGGGTGCCATCCAACTGGGGATTGGGTACACGGTGGGCAACCTC
AGCTCTAAGCCAGAACGCGATGTGCTCATGCAGGACTTCTATGTGGTGGAGAGCATCTTCTTTC
CCAGCGAAGGGAGCAACCTTACCCCCGCCCACCACTTCCAGGATTTCCGTTTCAAGACCTATGC
ACCTGTTGCCTTCCGTTACTTCCGGGAGCTCTTTGGTATCCGTCCGGACGATTACTTGTACTCA
CTCTGCAACGAGCCACTCATTGAGCTGTCCAACCCGGGTGCCAGTGGCTCCGTCTTCTACGTCA
CCAGCGATGACGAGTTCATCATTAAGACTGTCATGCACAAGGAGGCGGAGTTCCTGCAGAAACT
GCTGCCTGGCTACTATATGAACCTCAACCAGAACCCCCGGACCTTGCTGCCCAAGTTCTATGGG
CTGTACTGTGTGCAGTCCGGCGGCAAGAACATTCGAGTGGTGGTCATGAACAATGTGCTGCCCC
GTGTCGTCAAGATGCACCTCAAGTTCGACCTCAAGGGCTCCACGTACAAGCGCAGGGCCAGCAA
GAAGGAGAAGGAGAAGAGCCTGCCCACCTACAAGGACCTGGACTTCATGCAGGACATGCCAGAG
GGGCTGCTACTGGACTCTGACACCTTTGGCGCCCTGGTCAAGACGCTGCAGCGAGACTGCCTGG
TGTTGGAGAGCTTCAAGATAATGGACTACAGCCTGCTGCTGGGTGTGCACAACATTGACCAGCA
GGAGCGGGAGCGCCAGGCCGAGGGCGCCCAGAGCAAGGCTGACGAGAAGCGGCCGGTGGCCCAG
AAGGCCCTCTACTCCACAGCCATGGAGTCCATTCAGGGCGGAGCTGCCCGTGGGGAGGCCATTG
AGACAGATGACACGATGGGTGGGATCCCAGCCGTGAATGGGCGTGGGGAGCGCTTGCTCCTACA
CATCGGAATCATTGACATTCTGCAGTCCTACAGGTTCATCAAGAAGTTAGAACACACCTGGAAG
GCCCTCGTCCACGATGGGGATACCGTCTCAGTCCACCGGCCCAGCTTCTATGCCGAGCGCTTCT
TCAAGTTCATGAGCAGCACGGTCTTCCGGAAGAGTTCCTCCCTCAAGTCCTCTCCATCTAAGAA
AGGGCGTGGCGCCCTGCTCGCAGTCAAGCCCCTGGGGCCCACCGCAGCCTTCTCAGCTAGCCAG
ATCCCCAGTGAGAGAGAGGATGTGCAGTACGACCTGCGGGGAGCCCGCAGCTACCCCACGCTGG
AGGATGAAGGCCGGCCTGACCTCCTGCCCTGCACCCCACCGTCCTTTGAGGAAGCCACCACAGC
CTCTATCGCCACCACCCTGTCATCCACCTCCCTCTCCATCCCAGAGCGGTCCCCTTCAGACACA
TCAGAGCAGCCCCGGTACAGGCGGCGTACGCAGTCTTCAGGCCAGGATGGCCGGCCCCAGGAGG
AGCTGCATGCGGAAGACCTGCAGAAGATAACTGTGCAGGTGGAGCCAGTGTGTGGTGTGGGGGT
TGTCGTCCCCAAGGAGCAGGGTGCAGGAGTGGAGGTTCCCCCATCTGGGGCATCGGCAGCAGCC
ACGGTGGAAGTAGACGCTGCCAGCCAGGCCTCAGAGCCCGCCAGCCAAGCCTCTGATGAGGAAG
ATGCGCCTTCCACAGACATCTATTTTCCCACCGACGAGAGGAGCTGGGTGTACTCCCCGCTTCA
CTATAGCGCACGGCCCGCCTCCGACGGCGAGAGCGACACAGTAAGTCCCCAGTAACTTCTATGC
AGTCCCCAATCTGGAGCCCAGCGTCCTTCTGCCACCCCAGCCACTTCCTGGAGGCGCTGCCCCC
CACTGGGGCTCAGAGCTCAGCGACATCACCCCGATGGCCCTGGCCCGACCTTGTTCTCTCCCTC
CCCACTGACGGACGCCATTGGCCAGGCCCAGCCCCAGGATAGGTCAGGCCTCCATCTGCTGCTA
CCTGTGCCTGTTGGGGCGGCAAGATTTGGAGTGCACATTCTGTATTTATTTTGGGTCCACCCCT
CCCCCCCCTTTTTTTGGACGGAGAGGGAGCACAGGAGTGTTTTTCTAGGAAAAAGACAAGACAC
AAAAAACCCAGGAAGAGGCTGCAGCCACCAGCCTTGGTGGATCAGGTTCTATGTGTCTCAGTAC
CCTGGGGACAGTGGCCAGGTAGCTCCAGTAAACCCCACACACTCCAGAGCTCGTTATGACTGGC
AGAGGAGACAGGCCCTGGAGCCGCGGCTTGCCGTCCCGGGTCTGTGTTCCTGAGTTGGGTCGCC
TCAACAGAGCCCCTCCTTCACCTCAGGTTTGGGACCCAAGCAAACCAGGACTAGTCATGCCCTG
TGGTCTTTCTGCATCTGTTTACTGCCACTGGAAGGATGTCCCTACGCATGTCTTGTGGCTACAA
TCACCTGATGCTGACTGGGAGGTTCCATATTGTCTGCCTCTCATCCCCATGAAACCCTGAGCTG
GTGCTGTGGGTCCCCTCAACTCCCAGGGAAATCTCTGCCCCCAAGAAGGGCACAGCCAGGCTTC
AGGCTGCAGAGTGAGAGTTTGGTCCTTACCTTGGTTGAAGAGAGTAAGAAAGGGACATCACCTC
AGCAAAGCCAACCATATCTACTGACCACCAGGGAGATCGCAGCAAGCATTCTCCACTGGGCAGA
CCCCAGTGTGTTGGGTGCAGTCCAGCTATGCTATGCCTCTGTTTCGTGGATGTTCCACCCACGG
TAGGCGGAGTCAAGCAGGAATGTTCTGAAAGCACGCAGCCACAGGACACAACCTTTGGGTCAGC
TTCATGGGCCTCTTGGGTTGCACCTTCAGGGACAGGGGCTATCTGGCTTCCAAGGACTGTAGCA
GCCTGTGGAGGCAGTGTGGAGCATGACACTGCCATCGTGGCCAGAAAAGGCATGGCCAGGGAGA
GGACCCCTGGAGGGGGAGAGTAGGAGAGATGGGCAGATGCCTGTCCCTGGACCTCACATCAGCC
CCCTTCCTGTTGAGGAATGCACAGTGAACACACCGTGGGGAGCTGCTGCATGAGTTAACTAAGG
GGTTGGGGCTTGCACACACCAGGCAAGCATGTCACACCTGCCATCCCTGAACTTGGAAAGTTAA
GGCAGGAGGGTTGTGGCAAGTTCCAGGCTCGCGTGGGTTAGAGTAAAACGAGACCAAAAGGAAA
AAAAAAATCACAGGGCTGGCCCTACCACTCAGTGGGCAGAACTCACCCAGCTGCATAAACCCTG
AGTTCCATTCCAGCACCACAGAAACCAGATTGGGAGGCACACAGCTGCCATCCCTCGCTTGGGA
AACAGGCAGAAAGAGCAGGAGTGCAAGGCCATCCTTGGCTGTATCCAGTTGAAGGCCAGCCTGG
GCTACATGAGACTCTCTCAAAAGAGAATCTGTAAATATCTTCGTGACCCCACCTCCCATCCTGT
TCTCTATGATGGCCGCTATCGCCCCACCGTGGACGGTGTGTGAACTGTACTGTAAAGGCCTGCC
TGGGGGCGCCTCCAAGGCTGAAGAGGTGCCCTCCCCGGCCCGCCTCTGTTCTCCTCAAGCCATC
CCAGCAAGTCCCCTGTCCAGCCCCACACCAACCTCAGTGCAATATGCCCTTCCCGTGGGGTCCC
CTGGCACGGTACTGTCTCTGCAGCCCCTTGTCTCTTACCCCTAGCTCCTCTCTCCCAGTGGTTA
AAAATCACATCGCACATCCTCCCCCACATCCTGTTTTTATTGTTGAATCCATTCTGTAAACTAC
AAACCTCCTGTGTCTTACTCATCAGGAATAGGGATCCCGGGTCCTCAGCCCATGTGATCTGGTG
TTTGACAATCCAAGTACAGTGTCCCCTTGGCACCAACCAGTGGGGCCTGTCCCTCCAGCGCAGC
CGGCAAATGTATGCAGCCCAGGTTCCCGCTCCACCTGTCACACCCCTCTTTTTGAGATCTGTAA
TAAATCTCTAATAAGAAACA

hide sequence

RefSeq Acc Id:

XM_039079020 ⟹ XP_038934948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,048,137 - 9,076,748 (-)	NCBI
mRatBN7.2	7	8,397,406 - 8,426,030 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001009967	(Get FASTA)	NCBI Sequence Viewer
	NP_001029142	(Get FASTA)	NCBI Sequence Viewer
	NP_001426687	(Get FASTA)	NCBI Sequence Viewer
	NP_001426688	(Get FASTA)	NCBI Sequence Viewer
	XP_006240997	(Get FASTA)	NCBI Sequence Viewer
	XP_008763323	(Get FASTA)	NCBI Sequence Viewer
	XP_008763325	(Get FASTA)	NCBI Sequence Viewer
	XP_038934948	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI01910	(Get FASTA)	NCBI Sequence Viewer
	AAW34235	(Get FASTA)	NCBI Sequence Viewer
	EDL89167	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057873
	ENSRNOP00000068990
	ENSRNOP00000097462
GenBank Protein	Q5I6B8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001009967 ⟸ NM_001009967
- Peptide Label:	isoform c
- UniProtKB:	Q5I6B8 (UniProtKB/Swiss-Prot), F1M8H6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELEVPDEAESAEAGAVTAEAAWSAESGAAAGMTQKKAILAEAPLVTGQPGPGHGKKLGHRGVD ASGETTYKKTTSSTLKGAIQLGIGYTVGNLSSKPERDVLMQDFYVVESIFFPSEGSNLTPAHHF QDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCNEPLIELSNPGASGSVFYVTSDDEFIIKTVMH KEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQSGGKNIRVVVMNNVLPRVVKMHLKFDLKG STYKRRASKKEKEKSLPTYKDLDFMQDMPEGLLLDSDTFGALVKTLQRDCLVLESFKIMDYSLL LGVHNIDQQERERQAEGAQSKADEKRPVAQKALYSTAMESIQGGAARGEAIETDDTMGGIPAVN GRGERLLLHIGIIDILQSYRFIKKLEHTWKALVHDGDTVSVHRPSFYAERFFKFMSSTVFRKSS SLKSSPSKKGRGALLAVKPLGPTAAFSASQIPSEREDVQYDLRGARSYPTLEDEGRPDLLPCTP PSFEEATTASIATTLSSTSLSIPERSPSDTSEQPRYRRRTQSSGQDGRPQEELHAEDLQKITVQ VEPVCGVGVVVPKEQGAGVEVPPSGASAAATVEVDAASQASEPASQASDEEDAPSTDIYFFAHG RYWLFSPRRRRLRAVTPSHTGAPTDERSWVYSPLHYSARPASDGESDT hide sequence

RefSeq Acc Id:	NP_001029142 ⟸ NM_001033970
- Peptide Label:	isoform b
- UniProtKB:	Q3MID5 (UniProtKB/TrEMBL), A0A8I5XWP7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELEVPDEAESAEAGAVTAEAAWSAESGAAAGMTQKKAILAEAPLVTGQPGPGHGKKLGHRGVD ASGETTYKKTTSSTLKGAIQLGIGYTVGNLSSKPERDVLMQDFYVVESIFFPSEGSNLTPAHHF QDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCNEPLIELSNPGASGSVFYVTSDDEFIIKTVMH KEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQSGGKNIRVVVMNNVLPRVVKMHLKFDLKG STYKRRASKKEKEKSLPTYKDLDFMQDMPEGLLLDSDTFGALVKTLQRDCLVLESFKIMDYSLL LGVHNIDQQERERQAEGAQSKADEKRPVAQKALYSTAMESIQGGAARGEAIETDDTMGGIPAVN GRGERLLLHIGIIDILQSYRFIKKLEHTWKALVHDGDTVSVHRPSFYAERFFKFMSSTVFRKSS SLKSSPSKKGRGALLAVKPLGPTAAFSASQIPSEREDVQYDLRGARSYPTLEDEGRPDLLPCTP PSFEEATTASIATTLSSTSLSIPERSPSDTSEQPRYRRRTQSSGQDGRPQEELHAEDLQKITVQ VEPVCGVGVVVPKEQGAGVEVPPSGASAAATVEVDAASQASEPASQASDEEDAPSTDIYF hide sequence

RefSeq Acc Id:

XP_006240997 ⟸ XM_006240935

- Peptide Label:

isoform X4

- Sequence:

show sequence

MELEVPDEAESAEAGAVTAEAAWSAESGAAAGMTQKKAILAEAPLVTGQPGPGHGKKLGHRGVD
ASGETTYKKTTSSTLKGAIQLGIGYTVGNLSSKPERDVLMQDFYVVESIFFPSEGSNLTPAHHF
QDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCNEPLIELSNPGASGSVFYVTSDDEFIIKTVMH
KEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQSGGKNIRVVVMNNVLPRVVKMHLKFDLKG
STYKRRASKKEKEKSLPTYKDLDFMQDMPEGLLLDSDTFGALVKTLQRDCLVLESFKIMDYSLL
LGVHNIDQQERERQAEGAQSKADEKRPVAQKALYSTAMESIQGGAARGEAIETDDTMGGIPAVN
GRGERLLLHIGIIDILQSYRFIKKLEHTWKALVHDGDTVSVHRPSFYAERFFKFMSSTVFRKSS
SLKSSPSKKGRGALLAVKPLGPTAAFSASQIPSEREDVQYDLRGARSYPTLEDEGRPDLLPCTP
PSFEEATTASIATTLSSTSLSIPERSPSDTSEQPRYRRRTQSSGQDGRPQEELHAEDLQKITVQ
VEPVCGVGVVVPKEQGAGVEVPPSGASAAATVEVDAASQASEPASQASDEEDAPSTDIYFPTDE
RSWVYSPLHYSARPASDGESDT

hide sequence

RefSeq Acc Id:

XP_008763325 ⟸ XM_008765103

- Peptide Label:

isoform X3

- Sequence:

show sequence

MELEVPDEAESAEAGAVTAEAAWSAESGAAAGMTQKKAILAEAPLVTGQPGPGHGKKLGHRGVD
ASGETTYKKTTSSTLKGAIQLGIGYTVGNLSSKPERDVLMQDFYVVESIFFPSEGSNLTPAHHF
QDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCNEPLIELSNPGASGSVFYVTSDDEFIIKTVMH
KEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQSGGKNIRVVVMNNVLPRVVKMHLKFDLKG
STYKRRASKKEKEKSLPTYKDLDFMQDMPEGLLLDSDTFGALVKTLQRDCLVLESFKIMDYSLL
LGVHNIDQQERERQAEGAQSKADEKRPVAQKALYSTAMESIQGGAARGEAIETDDTMGGIPAVN
GRGERLLLHIGIIDILQSYRFIKKLEHTWKALVHDGDTVSVHRPSFYAERFFKFMSSTVFRKSS
SLKSSPSKKGRGALLAVKPLGPTAAFSASQIPSEREDVQYDLRGARSYPTLEDEGRPDLLPCTP
PSFEEATTASIATTLSSTSLSIPERSPSDTSEQPRYRRRTQSSGQDGRPQEELHAEDLQKITVQ
VEPVCGVGVVVPKEQGAGVEVPPSGASAAATVEVDAASQASEPASQASDEEDAPSTDIYFPTDE
RSWVYSPLHYSARPASDGESDTVSPQ

hide sequence

RefSeq Acc Id:	XP_008763323 ⟸ XM_008765101
- Peptide Label:	isoform X1
- UniProtKB:	Q5I6B8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MELEVPDEAESAEAGAVTAEAAWSAESGAAAGMTQKKAILAEAPLVTGQPGPGHGKKLGHRGVD ASGETTYKKTTSSTLKGAIQLGIGYTVGNLSSKPERDVLMQDFYVVESIFFPSEGSNLTPAHHF QDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCNEPLIELSNPGASGSVFYVTSDDEFIIKTVMH KEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQSGGKNIRVVVMNNVLPRVVKMHLKFDLKG STYKRRASKKEKEKSLPTYKDLDFMQDMPEGLLLDSDTFGALVKTLQRDCLVLESFKIMDYSLL LGVHNIDQQERERQAEGAQSKADEKRPVAQKALYSTAMESIQGGAARGEAIETDDTMGGIPAVN GRGERLLLHIGIIDILQSYRFIKKLEHTWKALVHDGDTVSVHRPSFYAERFFKFMSSTVFRKSS SLKSSPSKKGRGALLAVKPLGPTAAFSASQIPSEREDVQYDLRGARSYPTLEDEGRPDLLPCTP PSFEEATTASIATTLSSTSLSIPERSPSDTSEQPRYRRRTQSSGQDGRPQEELHAEDLQKITVQ VEPVCGVGVVVPKEQGAGVEVPPSGASAAATVEVDAASQASEPASQASDEEDAPSTDIYFFAHG RYWLFSPRRRQLRAVTPSHTGAPTDERSWVYSPLHYSARPASDGESDTVSPQ hide sequence

Ensembl Acc Id:

ENSRNOP00000057873 ⟸ ENSRNOT00000061159

Ensembl Acc Id:

ENSRNOP00000068990 ⟸ ENSRNOT00000088364

RefSeq Acc Id:	XP_038934948 ⟸ XM_039079020
- Peptide Label:	isoform X2
- UniProtKB:	Q5I6B8 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000097462 ⟸ ENSRNOT00000115219

Ensembl Acc Id:

ENSRNOP00000086276 ⟸ ENSRNOT00000095691

Ensembl Acc Id:

ENSRNOP00000077990 ⟸ ENSRNOT00000107025

Protein Domains

PIPK

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5I6B8-F1-model_v2	AlphaFold	Q5I6B8	1-688	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694977

Promoter ID:

EPDNEW_R5502

Type:

multiple initiation site

Name:

Pip5k1c_1

Description:

phosphatidylinositol-4-phosphate 5-kinase type 1 gamma

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	11,294,270 - 11,294,330	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309938	AgrOrtholog
BioCyc Gene	G2FUF-35013	BioCyc
BioCyc Pathway	PWY-6351 [D-myo-inositol (1,4,5)-trisphosphate biosynthesis]	BioCyc
	PWY-6352 [3-phosphoinositide biosynthesis]	BioCyc
BioCyc Pathway Image	PWY-6351	BioCyc
	PWY-6352	BioCyc
Ensembl Genes	ENSRNOG00000020577	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000061159	ENTREZGENE
	ENSRNOT00000088364	ENTREZGENE
	ENSRNOT00000115219	ENTREZGENE
Gene3D-CATH	2-Layer Sandwich	UniProtKB/Swiss-Prot
	3.30.800.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7933923	IMAGE-MGC_LOAD
InterPro	PInositol-4-P-4/5-kinase_C_sf	UniProtKB/Swiss-Prot
	PInositol-4-P-5-kinase	UniProtKB/Swiss-Prot
	PInositol-4-P-5-kinase_core	UniProtKB/Swiss-Prot
	PInositol-4-P-5-kinase_N	UniProtKB/Swiss-Prot
KEGG Report	rno:314641	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124518	IMAGE-MGC_LOAD
NCBI Gene	314641	ENTREZGENE
PANTHER	PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE TYPE-1 GAMMA	UniProtKB/Swiss-Prot
	PTHR23086	UniProtKB/Swiss-Prot
Pfam	PIP5K	UniProtKB/Swiss-Prot
PhenoGen	Pip5k1c	PhenoGen
PROSITE	PIPK	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000020577	RatGTEx
SMART	PIPKc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SAICAR synthase-like	UniProtKB/Swiss-Prot
UniProt	A0A0G2JU72_RAT	UniProtKB/TrEMBL
	A0A8I5XWP7	ENTREZGENE
	A0A8I6ARF9_RAT	UniProtKB/TrEMBL
	F1M8H6	ENTREZGENE, UniProtKB/TrEMBL
	PI51C_RAT	UniProtKB/Swiss-Prot
	Q3MID5	ENTREZGENE, UniProtKB/TrEMBL
	Q5I6B8	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-20	Pip5k1c	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	Pip5k1c	phosphatidylinositol-4-phosphate 5-kinase, type I, gamma	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-09	Pip5k1c	phosphatidylinositol-4-phosphate 5-kinase, type I, gamma	Pip5k1c	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-05-15	Pip5k1c	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	Pip5k1c	phosphatidylinositol-4-phosphate 5-kinase, type I, gamma	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Pip5k1c	phosphatidylinositol-4-phosphate 5-kinase, type I, gamma	Pip5k1c_predicted	phosphatidylinositol-4-phosphate 5-kinase, type I, gamma (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Pip5k1c_predicted	phosphatidylinositol-4-phosphate 5-kinase, type I, gamma (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

BioCyc Pathways