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Gene: Med23 (mediator complex subunit 23) Rattus norvegicus

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Symbol:

Med23

Name:

mediator complex subunit 23

RGD ID:

1307671

Description:

Contributes to ubiquitin protein ligase activity. Involved in protein ubiquitination. Part of ubiquitin ligase complex. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 18. Orthologous to human MED23 (mediator complex subunit 23); PARTICIPATES IN RNA polymerase II transcription pathway; INTERACTS WITH 17beta-estradiol; allethrin; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cofactor required for Sp1 transcriptional activation subunit 3; cofactor required for Sp1 transcriptional activation, subunit 3; CRSP complex subunit 3; Crsp3; LOC309565; mediator of RNA polymerase II transcription subunit 23

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MED23 (mediator complex subunit 23)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Med23 (mediator complex subunit 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Med23 (mediator complex subunit 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MED23 (mediator complex subunit 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MED23 (mediator complex subunit 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Med23 (mediator complex subunit 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MED23 (mediator complex subunit 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MED23 (mediator complex subunit 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Med23 (mediator complex subunit 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Med23 (mediator complex subunit 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FAM114A2 (family with sequence similarity 114 member A2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MED23 (mediator complex subunit 23)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Med23 (mediator complex subunit 23)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	med23 (mediator complex subunit 23)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	MED23	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sur-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sur-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	med23	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	med23	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	22,309,613 - 22,377,745 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	22,309,613 - 22,356,754 (-)	Ensembl				GRCr8
mRatBN7.2	1	20,490,315 - 20,558,461 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	20,490,315 - 20,537,463 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	20,266,984 - 20,314,129 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	26,266,973 - 26,314,118 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	20,466,878 - 20,514,023 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	21,539,765 - 21,587,675 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	21,539,765 - 21,586,910 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	23,019,607 - 23,067,752 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	21,013,168 - 21,060,313 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	19,242,971 - 19,290,165 (-)	NCBI		Celera
RGSC_v3.1	1	21,013,763 - 21,065,733 (-)	NCBI
Cytogenetic Map	1	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive intellectual developmental disorder 18 (ISO)

Fraser syndrome 3 (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

allethrin (EXP)

alpha-pinene (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

aspartame (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cisplatin (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

fenvalerate (EXP)

fluvastatin (ISO)

formaldehyde (ISO)

ivermectin (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

monosodium L-glutamate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pyrethrins (EXP)

resveratrol (ISO)

Soman (EXP)

sunitinib (ISO)

testosterone (ISO)

thapsigargin (ISO)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

Triptolide (EXP)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

positive regulation of gene expression (IBA,ISO)

positive regulation of T cell extravasation (ISO)

protein ubiquitination (IDA)

regulation of DNA-templated transcription (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

mediator complex (IBA,IEA,ISO)

nucleus (IEA,ISO)

transcription regulator complex (IBA,IEA,ISO)

ubiquitin ligase complex (IDA)

Molecular Function

protein binding (ISO)

ubiquitin protein ligase activity (IDA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Mammalian mediator subunit mMED8 is an Elongin BC-interacting protein that can assemble with Cul2 and Rbx1 to reconstitute a ubiquitin ligase.	Brower CS, etal., Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10353-8. Epub 2002 Jul 29.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	The Mediator complex and transcription regulation.	Poss ZC, etal., Crit Rev Biochem Mol Biol. 2013 Nov-Dec;48(6):575-608. doi: 10.3109/10409238.2013.840259. Epub 2013 Oct 3.
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9989412	PMID:12477932	PMID:15340084	PMID:20508642	PMID:25054639

Genomics

Comparative Map Data

Med23
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	22,309,613 - 22,377,745 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	22,309,613 - 22,356,754 (-)	Ensembl				GRCr8
mRatBN7.2	1	20,490,315 - 20,558,461 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	20,490,315 - 20,537,463 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	20,266,984 - 20,314,129 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	26,266,973 - 26,314,118 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	20,466,878 - 20,514,023 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	21,539,765 - 21,587,675 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	21,539,765 - 21,586,910 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	23,019,607 - 23,067,752 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	21,013,168 - 21,060,313 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	19,242,971 - 19,290,165 (-)	NCBI		Celera
RGSC_v3.1	1	21,013,763 - 21,065,733 (-)	NCBI
Cytogenetic Map	1	p12	NCBI

MED23
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	131,573,966 - 131,628,313 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	131,573,966 - 131,628,242 (-)	Ensembl			hg38	GRCh38
GRCh37	6	131,895,106 - 131,949,453 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	131,936,799 - 131,991,056 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	131,936,799 - 131,991,056	NCBI
Celera	6	132,641,744 - 132,696,002 (-)	NCBI		Celera
Cytogenetic Map	6	q23.2	NCBI
HuRef	6	129,476,289 - 129,531,194 (-)	NCBI		HuRef
CHM1_1	6	132,158,892 - 132,213,170 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	132,768,443 - 132,822,783 (-)	NCBI		T2T-CHM13v2.0

Med23
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	24,745,889 - 24,789,358 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	24,745,884 - 24,789,579 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	24,869,986 - 24,913,529 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	24,869,986 - 24,913,681 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	24,589,792 - 24,633,335 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	24,559,463 - 24,602,876 (+)	NCBI		MGSCv36	mm8
Celera	10	25,800,708 - 25,844,502 (+)	NCBI		Celera
Cytogenetic Map	10	A4	NCBI
cM Map	10	12.26	NCBI

Med23
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	12,249,995 - 12,293,813 (-)	Ensembl
ChiLan1.0	NW_004955436	12,249,995 - 12,293,812 (-)	NCBI	ChiLan1.0	ChiLan1.0

MED23
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	151,592,256 - 151,634,143 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	149,498,888 - 149,540,825 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	129,386,301 - 129,428,120 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	133,493,587 - 133,535,337 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	133,481,115 - 133,535,988 (-)	Ensembl			panPan2	panpan1.1

MED23
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	195,638 - 240,741 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	195,726 - 240,516 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	333,600 - 378,570 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	339,155 - 384,349 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	339,124 - 418,391 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	195,971 - 241,018 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	266,817 - 311,872 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	337,561 - 382,633 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Med23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	119,962,645 - 120,004,052 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937067	849 - 41,298 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004937067	14 - 41,438 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MED23
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	31,959,934 - 32,001,581 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	31,959,934 - 32,001,591 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	35,469,173 - 35,507,325 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MED23
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	41,927,266 - 41,969,120 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	41,927,308 - 41,969,447 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	14,088,466 - 14,130,261 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Med23
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624753	5,751,779 - 5,799,413 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624753	5,751,782 - 5,799,305 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Med23
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	210,924,082 - 210,967,667 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Med23
383 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	316
Count of miRNA genes:	183
Interacting mature miRNAs:	207
Transcripts:	ENSRNOT00000032424
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	5293229	34184556	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	7746118	52746118	Rat
4889451	Eae29	Experimental allergic encephalomyelitis QTL 29	5.51		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	7746121	52746121	Rat
70179	Xhs2	X-ray hypersensitivity QTL 2	3.2		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	1	1	43965634	Rat
1354647	Despr8	Despair related QTL 8		0.0000341	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	1	26564886	Rat
1558642	Prcr2	Prostate cancer resistance QTL 2	4.3		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	1	10379492	55379492	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	6941022	51941022	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	5293229	34184556	Rat
1357401	Bw43	Body weight QTL 43	3.75		body mass (VT:0001259)	body weight (CMO:0000012)	1	6909353	51909353	Rat
631494	Bp95	Blood pressure QTL 95	40	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	17315378	51816258	Rat
1600360	Mcs16	Mammary carcinoma susceptibility QTL 16	2.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	1	26564886	Rat
5684998	Bss101	Bone structure and strength QTL 101	3.6		tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	1	6909353	51909353	Rat
5684999	Bss102	Bone structure and strength QTL 102	5.5	7e-07	tibia strength trait (VT:1000284)	tibia stiffness (CMO:0001735)	1	6909353	51909353	Rat
2302038	Pia31	Pristane induced arthritis QTL 31	5.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	1	12820494	57820494	Rat
2317755	Glom22	Glomerulus QTL 22	3.8		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	1	34184556	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	20656420	65656420	Rat
1300170	Rf6	Renal function QTL 6	3.14		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	1	1	28483164	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	20508326	65508326	Rat
631508	Sald1	Serum aldosterone level QTL 1	3.7		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	1	11684464	56684464	Rat
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	5293229	34184556	Rat

Markers in Region

BF397912

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	20,511,792 - 20,512,005 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	21,561,243 - 21,561,455	NCBI	Rnor6.0
Rnor_5.0	1	23,041,085 - 23,041,297	UniSTS	Rnor5.0
RGSC_v3.4	1	21,034,646 - 21,034,858	UniSTS	RGSC3.4
Celera	1	19,264,449 - 19,264,661	UniSTS
RH 3.4 Map	1	193.0	UniSTS
Cytogenetic Map	1	p12	UniSTS

RH129988

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	20,490,448 - 20,490,642 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	21,539,899 - 21,540,092	NCBI	Rnor6.0
Rnor_5.0	1	23,019,741 - 23,019,934	UniSTS	Rnor5.0
RGSC_v3.4	1	21,013,302 - 21,013,495	UniSTS	RGSC3.4
Celera	1	19,243,105 - 19,243,298	UniSTS
RH 3.4 Map	1	192.1	UniSTS
Cytogenetic Map	1	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001277054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC139610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC090022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000032424 ⟹ ENSRNOP00000036610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	22,309,613 - 22,356,754 (-)	Ensembl
mRatBN7.2 Ensembl	1	20,490,315 - 20,537,463 (-)	Ensembl
Rnor_6.0 Ensembl	1	21,539,765 - 21,586,910 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097341 ⟹ ENSRNOP00000090175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	22,309,613 - 22,356,754 (-)	Ensembl
mRatBN7.2 Ensembl	1	20,490,315 - 20,537,463 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104432 ⟹ ENSRNOP00000078850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	22,309,613 - 22,356,665 (-)	Ensembl
mRatBN7.2 Ensembl	1	20,490,315 - 20,537,374 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158273 ⟹ ENSRNOP00000111413

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	22,309,613 - 22,356,754 (-)	Ensembl

RefSeq Acc Id:

NM_001277054 ⟹ NP_001263983

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	22,309,613 - 22,356,754 (-)	NCBI
mRatBN7.2	1	20,490,315 - 20,537,463 (-)	NCBI
Rnor_6.0	1	21,539,765 - 21,586,910 (-)	NCBI
Rnor_5.0	1	23,019,607 - 23,067,752 (-)	NCBI
Celera	1	19,242,971 - 19,290,165 (-)	NCBI

Sequence:

show sequence

GCTCCGCCCCCTCGCTCCATTCTTCCCAGGTCTAGGGGTTCACCCGGTGGTTGCCGGGTACCCC
GGAAGGCCGGGACTCGATGGTACCAATGGAGACGCAACTGCAGAGCATTTTCGAGGAGGTGGTG
AAAACAGAAATTATAGAAGAGGCTTTCCCAGGCATGTTTATGGATACCCCCGAGGATGAAAAAA
CAAAACTTATTAGCTGTTTGGCAGCCTTCCGGCAGTTTTGGAATGGACTTTCTCAGGAGTCTCA
TGAACAGTGTGTCCAGTGGATTGTTAAATTTATTCACGGCCAACATAGCCCGAAAAGGATTTCC
TTTCTCTATGACTGCTTAGCCATGGCAGTTGAGACTGGTCTTCTTCCACCCAGGATGGTTTGTG
AATCTTTGATAAACTCTGACACTCTTGAATGGGAAAGAACACAGCTTTGGGCCTTAACATTTAA
GCTGGTTCGGAAAATCATTGGAGGAGTGGATTATAAGGGTGTTCGAGACCTCCTGAAAGTGATT
TTGGAGAAAATCTTGACAATCCCGAATACTGTAAGCTCTGCTGTTGTCCAGCAGCTTCTGGCAG
CAAGAGAGGTTATAGCGTATATCTTGGAACGAAATGCCTGCCTGTTGCCAGCCTACTTTGCAGT
CACAGAGATCAGAAAATTATATCCCGAGGGAAAACTTCCACACTGGTTACTAGGAAACTTGGTA
TCAGACTTTGTGGATACCTTCAGGCCCACAGCGAGGATAAACTCCATTTGTGGCCGTTGCAGTC
TTCTGCCAGTTGTGAACAACTCGGGAGCCATCTGTAACTCATGGAAACTGGACCCTGCAACTCT
CCGCTTTCCCTTGAAAGGCCTTTTGCCATACGATAAGGATCTGTTTGAACCCCAGACTGCTTTG
TTGAGATATGTACTGGAGCAGCCTTACTCCAGGGATATGGTCTGCAATATGCTAGGTTTAAACA
AGCAGCACAAGCAGCGCTGCCCTGTGCTGGAGGACCAGTTGGTGGACCTGGTGGTGTACGCCAT
GGAGAGGTCTGAGACCGAGGAGAAGTTTGACGATGGGGGAACCAGCCAGCTCCTGTGGCAGCAC
CTTTCCAGCCAGCTCATTTTCTTTGTGCTTTTCCAGTTTGCCAGTTTCCCACATATGGTTCTGT
CTCTCCACCAGAAGTTAGCAGGGCGAGGACTGATTAAAGGGCGAGACCATCTGATGTGGGTTCT
GCTGCAGTTCATCTCGGGAAGTATTCAGAAAAATGCGCTTGCTGACTTCCTCCCTGTCATGAAG
CTCTTTGACCTGCTGTACCCAGAGAAGGAATGTATCCCAGTTCCTGATATTAACAAACCACAGT
CAACACATGCCTTTGCAATGACTTGTATTTGGATTCATCTTAATAGAAAAGCTCAAAATGACAA
CTCCAAGCTGCAGATCCCCATACCCCACTCCCTGAAGCTGCACCACGAGTTCCTACAGCAGAGT
CTGAGAAACAAAAGTTTGCAGATGAATGACTATAAGATCGCCCTGCTGTGTAATGCGTATTCTA
CAAATTCAGAGTGTTTCACCTTACCTATGGGCGCTCTGGTAGAGACCATTTATGGCAATGGAAT
TATGAGAGTGCCTCTCCCCGGGACAAGCTGTCTGGCCTCAGCATCAGTAACTCCCTTACCAATG
AACCTCCTGGATTCTCTGACAGTGCATGCCAAGATGAGCCTTATTCACAGCATTGCAACCAGAG
TGATAAAACTGGCTCATACAAAATCCAGTGTCGCATTGGCTCCAGCCCTGGTGGAAACTTACAG
TCGTTTACTGGTCTACATGGAAATAGAATCTTTGGGCATCAAAGGATTTATCAGTCAGCTCCTG
CCCACTGTCTTCAAGTCCCATGCCTGGGGCATCCTGCACACGCTGCTGGAGATGTTCAGCCACC
GGATGCACCACATTCAGCCACATTACCGAGTTCAGCTCCTGAGCCATCTCCACACCCTGGCTGC
AGTTGCACAAACCAACCAGAACCAGCTCCATCTGTGCGTAGAAAGTACTGCGCTGAGGCTCATC
ACGGCGCTGGGGAGCTCCGAGGTCCAGCCGCAGTTTACACGCTTCCTCAACGATCCCAAAACAG
TGCTGTCCGCAGAATCTGAAGAGCTGAACCGAGCCTTGATCCTGACCTTGGCCAGAGCAACCCA
CGTCACAGATTTTTTTACAGGATCTGATTCAATACAGGGAACTTGGTGTAAAGATATCCTTCAG
ACCATCATGACTTTTACTCCTCATAACTGGGCTTCGCACACCCTTAGCTGTTTTCCAGCCCCTC
TGCAGGCATTCTTCAAGCAAAATAATGTACCTCAGGAAAGCCGTTTTAATCTGAAAAAAAACGT
GGAAGAAGAGTACAGGAAGTGGAAGTCAATGACTGATGAAAACGAGATCATCACCCAGTTCTCC
ATGCAAGGCTTCCCTCCGCTCTTCCTCTGTCTCCTCTGGAAAATGCTCCTGGAAACGGATCACA
TTAGTCAGATTGGGTACAAAGTACTAGAGAGAATTGGGGCCAGGGCCTTGGTGGCCCACGTGAG
AACCTTTGCAGATTTCTTGGTGTATGAGTTCTCTACATCAGCAGGAGGTCAGCAACTCAATAAA
TGCATTGAGATTCTCAATGACATGGTGTGGAAGTACAACATTGTCACACTGGACAGACTAATTC
TCTGCCTGGCTATGCGTAGTCATGAAGGAAATGAAGCTCAGGTTTGTTATTTCATAATTCAGTT
GCTATTGCTAAAACCAAATGACTTCCGAAACCGAGTGAGTGACTTTGTGAAGGAGAACTCCCCA
GAGCACTGGCTGCAGAGCGACTGGCACACCAAACACATGAGCTACCACAAGAAATATCCAGAGA
AGTTGTACTTTGAAGGCCTGGCAGAACAGGTTGACCCTCCTGTACCAATTCAGTCCCCGTATCT
GCCCATCTACTTTGGAAACGTGTGTCTCCGGTTTCTTCCAGTATTTGATATAGTGATCCACAGG
TTTTTAGAGTTGCTGCCAGTGTCCAAATCACTAGAGACTCTCCTGGATCACCTAGGGGGCTTGT
ACAAATTCCACGACCGGCCGGTGACTTACCTGTATAACACTTTACACTATTATGAAATGTGCCT
GAGAAACCGTGACCATCTCAAACGAAAACTCGTCCATGCCATCATTGGCTCCCTCAAAGATAAC
CGGCCACAGGGCTGGTGTCTCAGTGACACCTACCTGAAGCATGCTATGAATGCACGGGAGGACA
ACCCCTGGGTTCCAGAGGACTCCTACTACTGCAAGCTGATTGGCCGGCTGGTAGACACCATGGC
TGGCAAGTCTCCGGGACCCTTCCCAAACTGTGACTGGAGATTCAATGAGTTCCCCAACCCTGCT
GCCCATGCTCTGCATGTGACGTGTGTGGAACTCATGGCCTTGGCAGTTCCAGGCAAAGATGTCG
GGAATGCCCTTCTCAATGTTGTCCTGAAAAGCCAGCCCTTAGTGCCAAGGGAGAACATCACAGC
ATGGATGAATGCAATTGGTCTGATCATCACGGCCCTCCCAGAACCATACTGGATTGTGCTTCAT
GACCGAATCGTGAGTGTAATCAGCAGTTCTAGCCTGACGTCAGAGACAGAGTGGGTTGGTTATC
CGTTCCGCCTCTTCGACTTCACCGCTTGTCACCAGTCCTACTCTGAGATGAGCTGCAGCTACAC
GTTAGCGCTGGCTCACGCCGTGTGGCACCACTCCAGCATCGGACAGCTCTCGCTTATCCCGAAG
TTTCTCACTGAAGTGCTTCTTCCCGTGGTGAAGACTGAATTCCAGTTGCTTTACGTGTACCATC
TCGTAGGGCCATTTTTACAGCGATTCCAGCAGGAGAGAACCCGGTGCATGATCGAGATTGGAGT
GGCATTTTATGACATGCTGCTGAATGTAGACCAGTGCAGCACCCACCTCAATTACATGGACCCC
ATCTGCGACTTCCTATACCATATGAAGTATATGTTCACTGGAGACAGTGTGAAGGAGCAGGTAG
AGAAGATCATCTGTAATTTAAAGCCAGCTTTGAAGCTTCGTCTTCGGTTCATCACGCACATCAG
CAAGATGGAGCCGGCAGTGCCACCCCAGGCCCTCAGCAGCGGGTCTCCAGCCCCTCAGGCCAAC
CAGGTGCCCACAGCTCTGCCCGTGACTCAGTGAGACCTGGGGCACTGTGACGAAGCAGAGGAGG
GGACTCACGGCTAAATCTGCGAAACCCGTCAGCGGCCATGTCCAGATTGGTTTATTCTGATTCA
GATACTGAATCTCTTTACACCTTCAAATCCCTTCTCCCTGTCTATGTTTTATCTCTAAGAGATT
AAGTAAGCTCTGTGTTGTTCATATTCCTATCATTTATTGGGGCCCTGGGAATGTGGGTGTTTCT
GTAGTCACGTGGCTTTGACCAGGCACTCCCAGGCTTCCTGTCTCAGCCACTTGTAAATTATTGT
ACGTGACACTTCACATTTTCTATACATTTCCTTGCAGACACAACACGTGTGCAATGGTCATTGC
AAACCCTTTTATACATAAAATGTCCTTCCAAATACATTAATTACAGGGCCTTATACTTCACTTG
GAGTACAGGACAAATGAAGTTTCATAGTTTTTTTTATTTAACTCCCTATAAATTTTTTATTGTA
AATTTTAAATTTCCAAATAGTTCCAAATAAATGATGTAAAGTTTCTACCAAAGTA

hide sequence

RefSeq Acc Id:

XM_008758612 ⟹ XP_008756834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	22,309,616 - 22,377,744 (-)	NCBI
mRatBN7.2	1	20,490,315 - 20,558,460 (-)	NCBI
Rnor_6.0	1	21,539,765 - 21,587,675 (-)	NCBI

Sequence:

show sequence

AAGCAAGTATGTCAAGGAAAAATGGTGGCTATATAAGGTGAAAAACTTAAATACAAAATGTATT
CGAACCACAAATAAACTTATGAGAAATTGTCTGATAGTAGACAAATTTAAACAGTCTAGTCATA
AATATCAAGGATGTGGAAAATTAACGACGATATAGTTTGAAAATGGTTTCTGGATGTAGGGCTG
TGTGACTGAGCCAGTGGGCACATATGATGTCAGAAATTTACCAGGATGGTGGGAAATAGTCTGT
TTTACAATGACGTGCTTAATACAGCCACTTACTTGCAAATTAATAATAATGCGTTTATTCCGGG
TTTTTTTTTTTCAACATCCAATAAAAGATGACGACATACCCATCACTGTGCTAGCTACTGAGGC
TACCATAGTGAAGACTTGGATTCTATTGGGCAAGAATAACGTGTTATCAACTGCTTCAACGAGG
TCAGCTCTTGACAGTCACCCACTTGGTTCTGGCTGCAGCCCTTGTGCTTCTGGGCTATATATAA
GTGAACTACAAGGAGCCGCGTCCGAGAAGCCAGGCTGGACGCAGCTCCGGCTCCAGCCAGGAGG
TGGTGGCCTTGCTGTCCAAGGCTGTGTCAGCGATCAAGCAGCGTTGTCAGCTTGCGGGCCACAT
CAGCACGCAGAACCATCAAGCAGAGATACGGATTTTGGAGGGGCTGGTAACGGGTGAGCACCGG
GCAGGCTCATTTGCGGAGCACCAAAGGAAGTAACAGAAAGAGCGGCGGCTTCCTGTTGGTGGCT
CCGCCCCCTCGCTCCATTCTTCCCAGGTCTAGGGGTTCACCCGGTGGTTGCCGGGTACCCCGGA
AGGCCGGGACTCGATGGTACCAATGGAGACGCAACTGCAGAGCATTTTCGAGGAGGTGGTGAAA
ACAGAAATTATAGAAGAGGCTTTCCCAGGCATGTTTATGGATACCCCCGAGGATGAAAAAACAA
AACTTATTAGCTGTTTGGCAGCCTTCCGGCAGTTTTGGAATGGACTTTCTCAGGAGTCTCATGA
ACAGTGTGTCCAGTGGATTGTTAAATTTATTCACGGCCAACATAGCCCGAAAAGGATTTCCTTT
CTCTATGACTGCTTAGCCATGGCAGTTGAGACTGGTCTTCTTCCACCCAGGATGGTTTGTGAAT
CTTTGATAAACTCTGACACTCTTGAATGGGAAAGAACACAGCTTTGGGCCTTAACATTTAAGCT
GGTTCGGAAAATCATTGGAGGAGTGGATTATAAGGGTGTTCGAGACCTCCTGAAAGTGATTTTG
GAGAAAATCTTGACAATCCCGAATACTGTAAGCTCTGCTGTTGTCCAGCAGCTTCTGGCAGCAA
GAGAGGTTATAGCGTATATCTTGGAACGAAATGCCTGCCTGTTGCCAGCCTACTTTGCAGTCAC
AGAGATCAGAAAATTATATCCCGAGGGAAAACTTCCACACTGGTTACTAGGAAACTTGGTATCA
GACTTTGTGGATACCTTCAGGCCCACAGCGAGGATAAACTCCATTTGTGGCCGTTGCAGTCTTC
TGCCAGTTGTGAACAACTCGGGAGCCATCTGTAACTCATGGAAACTGGACCCTGCAACTCTCCG
CTTTCCCTTGAAAGGCCTTTTGCCATACGATAAGGATCTGTTTGAACCCCAGACTGCTTTGTTG
AGATATGTACTGGAGCAGCCTTACTCCAGGGATATGGTCTGCAATATGCTAGGTTTAAACAAGC
AGACCTTGAACATTGCGCAGCACAAGCAGCGCTGCCCTGTGCTGGAGGACCAGTTGGTGGACCT
GGTGGTGTACGCCATGGAGAGGTCTGAGACCGAGGAGAAGTTTGACGATGGGGGAACCAGCCAG
CTCCTGTGGCAGCACCTTTCCAGCCAGCTCATTTTCTTTGTGCTTTTCCAGTTTGCCAGTTTCC
CACATATGGTTCTGTCTCTCCACCAGAAGTTAGCAGGGCGAGGACTGATTAAAGGGCGAGACCA
TCTGATGTGGGTTCTGCTGCAGTTCATCTCGGGAAGTATTCAGAAAAATGCGCTTGCTGACTTC
CTCCCTGTCATGAAGCTCTTTGACCTGCTGTACCCAGAGAAGGAATGTATCCCAGTTCCTGATA
TTAACAAACCACAGTCAACACATGCCTTTGCAATGACTTGTATTTGGATTCATCTTAATAGAAA
AGCTCAAAATGACAACTCCAAGCTGCAGATCCCCATACCCCACTCCCTGAAGCTGCACCACGAG
TTCCTACAGCAGAGTCTGAGAAACAAAAGTTTGCAGATGAATGACTATAAGATCGCCCTGCTGT
GTAATGCGTATTCTACAAATTCAGAGTGTTTCACCTTACCTATGGGCGCTCTGGTAGAGACCAT
TTATGGCAATGGAATTATGAGAGTGCCTCTCCCCGGGACAAGCTGTCTGGCCTCAGCATCAGTA
ACTCCCTTACCAATGAACCTCCTGGATTCTCTGACAGTGCATGCCAAGATGAGCCTTATTCACA
GCATTGCAACCAGAGTGATAAAACTGGCTCATACAAAATCCAGTGTCGCATTGGCTCCAGCCCT
GGTGGAAACTTACAGTCGTTTACTGGTCTACATGGAAATAGAATCTTTGGGCATCAAAGGATTT
ATCAGTCAGCTCCTGCCCACTGTCTTCAAGTCCCATGCCTGGGGCATCCTGCACACGCTGCTGG
AGATGTTCAGCCACCGGATGCACCACATTCAGCCACATTACCGAGTTCAGCTCCTGAGCCATCT
CCACACCCTGGCTGCAGTTGCACAAACCAACCAGAACCAGCTCCATCTGTGCGTAGAAAGTACT
GCGCTGAGGCTCATCACGGCGCTGGGGAGCTCCGAGGTCCAGCCGCAGTTTACACGCTTCCTCA
ACGATCCCAAAACAGTGCTGTCCGCAGAATCTGAAGAGCTGAACCGAGCCTTGATCCTGACCTT
GGCCAGAGCAACCCACGTCACAGATTTTTTTACAGGATCTGATTCAATACAGGGAACTTGGTGT
AAAGATATCCTTCAGACCATCATGACTTTTACTCCTCATAACTGGGCTTCGCACACCCTTAGCT
GTTTTCCAGCCCCTCTGCAGGCATTCTTCAAGCAAAATAATGTACCTCAGGAAAGCCGTTTTAA
TCTGAAAAAAAACGTGGAAGAAGAGTACAGGAAGTGGAAGTCAATGACTGATGAAAACGAGATC
ATCACCCAGTTCTCCATGCAAGGCTTCCCTCCGCTCTTCCTCTGTCTCCTCTGGAAAATGCTCC
TGGAAACGGATCACATTAGTCAGATTGGGTACAAAGTACTAGAGAGAATTGGGGCCAGGGCCTT
GGTGGCCCACGTGAGAACCTTTGCAGATTTCTTGGTGTATGAGTTCTCTACATCAGCAGGAGGT
CAGCAACTCAATAAATGCATTGAGATTCTCAATGACATGGTGTGGAAGTACAACATTGTCACAC
TGGACAGACTAATTCTCTGCCTGGCTATGCGTAGTCATGAAGGAAATGAAGCTCAGGTTTGTTA
TTTCATAATTCAGTTGCTATTGCTAAAACCAAATGACTTCCGAAACCGAGTGAGTGACTTTGTG
AAGGAGAACTCCCCAGAGCACTGGCTGCAGAGCGACTGGCACACCAAACACATGAGCTACCACA
AGAAATATCCAGAGAAGTTGTACTTTGAAGGCCTGGCAGAACAGGTTGACCCTCCTGTACCAAT
TCAGTCCCCGTATCTGCCCATCTACTTTGGAAACGTGTGTCTCCGGTTTCTTCCAGTATTTGAT
ATAGTGATCCACAGGTTTTTAGAGTTGCTGCCAGTGTCCAAATCACTAGAGACTCTCCTGGATC
ACCTAGGGGGCTTGTACAAATTCCACGACCGGCCGGTGACTTACCTGTATAACACTTTACACTA
TTATGAAATGTGCCTGAGAAACCGTGACCATCTCAAACGAAAACTCGTCCATGCCATCATTGGC
TCCCTCAAAGATAACCGGCCACAGGGCTGGTGTCTCAGTGACACCTACCTGAAGCATGCTATGA
ATGCACGGGAGGACAACCCCTGGGTTCCAGAGGACTCCTACTACTGCAAGCTGATTGGCCGGCT
GGTAGACACCATGGCTGGCAAGTCTCCGGGACCCTTCCCAAACTGTGACTGGAGATTCAATGAG
TTCCCCAACCCTGCTGCCCATGCTCTGCATGTGACGTGTGTGGAACTCATGGCCTTGGCAGTTC
CAGGCAAAGATGTCGGGAATGCCCTTCTCAATGTTGTCCTGAAAAGCCAGCCCTTAGTGCCAAG
GGAGAACATCACAGCATGGATGAATGCAATTGGTCTGATCATCACGGCCCTCCCAGAACCATAC
TGGATTGTGCTTCATGACCGAATCGTGAGTGTAATCAGCAGTTCTAGCCTGACGTCAGAGACAG
AGTGGGTTGGTTATCCGTTCCGCCTCTTCGACTTCACCGCTTGTCACCAGTCCTACTCTGAGAT
GAGCTGCAGCTACACGTTAGCGCTGGCTCACGCCGTGTGGCACCACTCCAGCATCGGACAGCTC
TCGCTTATCCCGAAGTTTCTCACTGAAGTGCTTCTTCCCGTGGTGAAGACTGAATTCCAGTTGC
TTTACGTGTACCATCTCGTAGGGCCATTTTTACAGCGATTCCAGCAGGAGAGAACCCGGTGCAT
GATCGAGATTGGAGTGGCATTTTATGACATGCTGCTGAATGTAGACCAGTGCAGCACCCACCTC
AATTACATGGACCCCATCTGCGACTTCCTATACCATATGAAGTATATGTTCACTGGAGACAGTG
TGAAGGAGCAGGTAGAGAAGATCATCTGTAATTTAAAGCCAGCTTTGAAGCTTCGTCTTCGGTT
CATCACGCACATCAGCAAGATGGAGCCGGCAGTGCCACCCCAGGCCCTCAGCAGCGGGTCTCCA
GCCCCTCAGGCCAACCAGGTGCCCACAGCTCTGCCCGTGACTCAGTGAGACCTGGGGCACTGTG
ACGAAGCAGAGGAGGGGACTCACGGCTAAATCTGCGAAACCCGTCAGCGGCCATGTCCAGATTG
GTTTATTCTGATTCAGATACTGAATCTCTTTACACCTTCAAATCCCTTCTCCCTGTCTATGTTT
TATCTCTAAGAGATTAAGTAAGCTCTGTGTTGTTCATATTCCTATCATTTATTGGGGCCCTGGG
AATGTGGGTGTTTCTGTAGTCACGTGGCTTTGACCAGGCACTCCCAGGCTTCCTGTCTCAGCCA
CTTGTAAATTATTGTACGTGACACTTCACATTTTCTATACATTTCCTTGCAGACACAACACGTG
TGCAATGGTCATTGCAAACCCTTTTATACATAAAATGTCCTTCCAAATACATTAATTACAGGGC
CTTATACTTCACTTGGAGTACAGGACAAATGAAGTTTCATAGTTTTTTTTATTTAACTCCCTAT
AAATTTTTTATTGTAAATTTTAAATTTCCAAATAGTTCCAAATAAATGATGTAAAGTTTCTACC
AAAGTA

hide sequence

RefSeq Acc Id:

XM_008758613 ⟹ XP_008756835

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	22,309,616 - 22,377,744 (-)	NCBI
mRatBN7.2	1	20,490,315 - 20,558,460 (-)	NCBI
Rnor_6.0	1	21,539,765 - 21,587,675 (-)	NCBI

Sequence:

show sequence

AAGCAAGTATGTCAAGGAAAAATGGTGGCTATATAAGGTGAAAAACTTAAATACAAAATGTATT
CGAACCACAAATAAACTTATGAGAAATTGTCTGATAGTAGACAAATTTAAACAGTCTAGTCATA
AATATCAAGGATGTGGAAAATTAACGACGATATAGTTTGAAAATGGTTTCTGGATGTAGGGCTG
TGTGACTGAGCCAGTGGGCACATATGATGTCAGAAATTTACCAGGATGGTGGGAAATAGTCTGT
TTTACAATGACGTGCTTAATACAGCCACTTACTTGCAAATTAATAATAATGCGTTTATTCCGGG
TTTTTTTTTTTCAACATCCAATAAAAGATGACGACATACCCATCACTGTGCTAGCTACTGAGGC
TACCATAGTGAAGACTTGGATTCTATTGGGCAAGAATAACGTGTTATCAACTGCTTCAACGAGG
TCAGCTCTTGACAGTCACCCACTTGGTTCTGGCTGCAGCCCTTGTGCTTCTGGGCTATATATAA
GTGAACTACAAGGAGCCGCGTCCGAGAAGCCAGGCTGGACGCAGCTCCGGCTCCAGCCAGGAGG
TGGTGGCCTTGCTGTCCAAGGCTGTGTCAGCGATCAAGCAGCGTTGTCAGCTTGCGGGCCACAT
CAGCACGCAGAACCATCAAGCAGAGATACGGATTTTGGAGGGGCTGGTAACGGGTGAGCACCGG
GCAGGCTCATTTGCGGAGCACCAAAGGAAGTAACAGAAAGAGCGGCGGCTTCCTGTTGGTGGCT
CCGCCCCCTCGCTCCATTCTTCCCAGGTCTAGGGGTTCACCCGGTGGTTGCCGGGTACCCCGGA
AGGCCGGGACTCGATGGTACCAATGGAGACGCAACTGCAGAGCATTTTCGAGGAGGTGGTGAAA
ACAGAAATTATAGAAGAGGCTTTCCCAGGCATGTTTATGGATACCCCCGAGGATGAAAAAACAA
AACTTATTAGCTGTTTGGCAGCCTTCCGGCAGTTTTGGAATGGACTTTCTCAGGAGTCTCATGA
ACAGTGTGTCCAGTGGATTGTTAAATTTATTCACGGCCAACATAGCCCGAAAAGGATTTCCTTT
CTCTATGACTGCTTAGCCATGGCAGTTGAGACTGGTCTTCTTCCACCCAGGATGGTTTGTGAAT
CTTTGATAAACTCTGACACTCTTGAATGGGAAAGAACACAGCTTTGGGCCTTAACATTTAAGCT
GGTTCGGAAAATCATTGGAGGAGTGGATTATAAGGGTGTTCGAGACCTCCTGAAAGTGATTTTG
GAGAAAATCTTGACAATCCCGAATACTGTAAGCTCTGCTGTTGTCCAGCAGCTTCTGGCAGCAA
GAGAGGTTATAGCGTATATCTTGGAACGAAATGCCTGCCTGTTGCCAGCCTACTTTGCAGTCAC
AGAGATCAGAAAATTATATCCCGAGGGAAAACTTCCACACTGGTTACTAGGAAACTTGGTATCA
GACTTTGTGGATACCTTCAGGCCCACAGCGAGGATAAACTCCATTTGTGGCCGTTGCAGTCTTC
TGCCAGTTGTGAACAACTCGGGAGCCATCTGTAACTCATGGAAACTGGACCCTGCAACTCTCCG
CTTTCCCTTGAAAGGCCTTTTGCCATACGATAAGCACAAGCAGCGCTGCCCTGTGCTGGAGGAC
CAGTTGGTGGACCTGGTGGTGTACGCCATGGAGAGGTCTGAGACCGAGGAGAAGTTTGACGATG
GGGGAACCAGCCAGCTCCTGTGGCAGCACCTTTCCAGCCAGCTCATTTTCTTTGTGCTTTTCCA
GTTTGCCAGTTTCCCACATATGGTTCTGTCTCTCCACCAGAAGTTAGCAGGGCGAGGACTGATT
AAAGGGCGAGACCATCTGATGTGGGTTCTGCTGCAGTTCATCTCGGGAAGTATTCAGAAAAATG
CGCTTGCTGACTTCCTCCCTGTCATGAAGCTCTTTGACCTGCTGTACCCAGAGAAGGAATGTAT
CCCAGTTCCTGATATTAACAAACCACAGTCAACACATGCCTTTGCAATGACTTGTATTTGGATT
CATCTTAATAGAAAAGCTCAAAATGACAACTCCAAGCTGCAGATCCCCATACCCCACTCCCTGA
AGCTGCACCACGAGTTCCTACAGCAGAGTCTGAGAAACAAAAGTTTGCAGATGAATGACTATAA
GATCGCCCTGCTGTGTAATGCGTATTCTACAAATTCAGAGTGTTTCACCTTACCTATGGGCGCT
CTGGTAGAGACCATTTATGGCAATGGAATTATGAGAGTGCCTCTCCCCGGGACAAGCTGTCTGG
CCTCAGCATCAGTAACTCCCTTACCAATGAACCTCCTGGATTCTCTGACAGTGCATGCCAAGAT
GAGCCTTATTCACAGCATTGCAACCAGAGTGATAAAACTGGCTCATACAAAATCCAGTGTCGCA
TTGGCTCCAGCCCTGGTGGAAACTTACAGTCGTTTACTGGTCTACATGGAAATAGAATCTTTGG
GCATCAAAGGATTTATCAGTCAGCTCCTGCCCACTGTCTTCAAGTCCCATGCCTGGGGCATCCT
GCACACGCTGCTGGAGATGTTCAGCCACCGGATGCACCACATTCAGCCACATTACCGAGTTCAG
CTCCTGAGCCATCTCCACACCCTGGCTGCAGTTGCACAAACCAACCAGAACCAGCTCCATCTGT
GCGTAGAAAGTACTGCGCTGAGGCTCATCACGGCGCTGGGGAGCTCCGAGGTCCAGCCGCAGTT
TACACGCTTCCTCAACGATCCCAAAACAGTGCTGTCCGCAGAATCTGAAGAGCTGAACCGAGCC
TTGATCCTGACCTTGGCCAGAGCAACCCACGTCACAGATTTTTTTACAGGATCTGATTCAATAC
AGGGAACTTGGTGTAAAGATATCCTTCAGACCATCATGACTTTTACTCCTCATAACTGGGCTTC
GCACACCCTTAGCTGTTTTCCAGCCCCTCTGCAGGCATTCTTCAAGCAAAATAATGTACCTCAG
GAAAGCCGTTTTAATCTGAAAAAAAACGTGGAAGAAGAGTACAGGAAGTGGAAGTCAATGACTG
ATGAAAACGAGATCATCACCCAGTTCTCCATGCAAGGCTTCCCTCCGCTCTTCCTCTGTCTCCT
CTGGAAAATGCTCCTGGAAACGGATCACATTAGTCAGATTGGGTACAAAGTACTAGAGAGAATT
GGGGCCAGGGCCTTGGTGGCCCACGTGAGAACCTTTGCAGATTTCTTGGTGTATGAGTTCTCTA
CATCAGCAGGAGGTCAGCAACTCAATAAATGCATTGAGATTCTCAATGACATGGTGTGGAAGTA
CAACATTGTCACACTGGACAGACTAATTCTCTGCCTGGCTATGCGTAGTCATGAAGGAAATGAA
GCTCAGGTTTGTTATTTCATAATTCAGTTGCTATTGCTAAAACCAAATGACTTCCGAAACCGAG
TGAGTGACTTTGTGAAGGAGAACTCCCCAGAGCACTGGCTGCAGAGCGACTGGCACACCAAACA
CATGAGCTACCACAAGAAATATCCAGAGAAGTTGTACTTTGAAGGCCTGGCAGAACAGGTTGAC
CCTCCTGTACCAATTCAGTCCCCGTATCTGCCCATCTACTTTGGAAACGTGTGTCTCCGGTTTC
TTCCAGTATTTGATATAGTGATCCACAGGTTTTTAGAGTTGCTGCCAGTGTCCAAATCACTAGA
GACTCTCCTGGATCACCTAGGGGGCTTGTACAAATTCCACGACCGGCCGGTGACTTACCTGTAT
AACACTTTACACTATTATGAAATGTGCCTGAGAAACCGTGACCATCTCAAACGAAAACTCGTCC
ATGCCATCATTGGCTCCCTCAAAGATAACCGGCCACAGGGCTGGTGTCTCAGTGACACCTACCT
GAAGCATGCTATGAATGCACGGGAGGACAACCCCTGGGTTCCAGAGGACTCCTACTACTGCAAG
CTGATTGGCCGGCTGGTAGACACCATGGCTGGCAAGTCTCCGGGACCCTTCCCAAACTGTGACT
GGAGATTCAATGAGTTCCCCAACCCTGCTGCCCATGCTCTGCATGTGACGTGTGTGGAACTCAT
GGCCTTGGCAGTTCCAGGCAAAGATGTCGGGAATGCCCTTCTCAATGTTGTCCTGAAAAGCCAG
CCCTTAGTGCCAAGGGAGAACATCACAGCATGGATGAATGCAATTGGTCTGATCATCACGGCCC
TCCCAGAACCATACTGGATTGTGCTTCATGACCGAATCGTGAGTGTAATCAGCAGTTCTAGCCT
GACGTCAGAGACAGAGTGGGTTGGTTATCCGTTCCGCCTCTTCGACTTCACCGCTTGTCACCAG
TCCTACTCTGAGATGAGCTGCAGCTACACGTTAGCGCTGGCTCACGCCGTGTGGCACCACTCCA
GCATCGGACAGCTCTCGCTTATCCCGAAGTTTCTCACTGAAGTGCTTCTTCCCGTGGTGAAGAC
TGAATTCCAGTTGCTTTACGTGTACCATCTCGTAGGGCCATTTTTACAGCGATTCCAGCAGGAG
AGAACCCGGTGCATGATCGAGATTGGAGTGGCATTTTATGACATGCTGCTGAATGTAGACCAGT
GCAGCACCCACCTCAATTACATGGACCCCATCTGCGACTTCCTATACCATATGAAGTATATGTT
CACTGGAGACAGTGTGAAGGAGCAGGTAGAGAAGATCATCTGTAATTTAAAGCCAGCTTTGAAG
CTTCGTCTTCGGTTCATCACGCACATCAGCAAGATGGAGCCGGCAGTGCCACCCCAGGCCCTCA
GCAGCGGGTCTCCAGCCCCTCAGGCCAACCAGGTGCCCACAGCTCTGCCCGTGACTCAGTGAGA
CCTGGGGCACTGTGACGAAGCAGAGGAGGGGACTCACGGCTAAATCTGCGAAACCCGTCAGCGG
CCATGTCCAGATTGGTTTATTCTGATTCAGATACTGAATCTCTTTACACCTTCAAATCCCTTCT
CCCTGTCTATGTTTTATCTCTAAGAGATTAAGTAAGCTCTGTGTTGTTCATATTCCTATCATTT
ATTGGGGCCCTGGGAATGTGGGTGTTTCTGTAGTCACGTGGCTTTGACCAGGCACTCCCAGGCT
TCCTGTCTCAGCCACTTGTAAATTATTGTACGTGACACTTCACATTTTCTATACATTTCCTTGC
AGACACAACACGTGTGCAATGGTCATTGCAAACCCTTTTATACATAAAATGTCCTTCCAAATAC
ATTAATTACAGGGCCTTATACTTCACTTGGAGTACAGGACAAATGAAGTTTCATAGTTTTTTTT
ATTTAACTCCCTATAAATTTTTTATTGTAAATTTTAAATTTCCAAATAGTTCCAAATAAATGAT
GTAAAGTTTCTACCAAAGTA

hide sequence

RefSeq Acc Id:

XM_039080800 ⟹ XP_038936728

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	22,309,616 - 22,377,745 (-)	NCBI
mRatBN7.2	1	20,490,315 - 20,558,461 (-)	NCBI

RefSeq Acc Id:

XM_039080806 ⟹ XP_038936734

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	22,309,616 - 22,377,744 (-)	NCBI
mRatBN7.2	1	20,490,315 - 20,558,460 (-)	NCBI

RefSeq Acc Id:

XM_063265558 ⟹ XP_063121628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	22,309,616 - 22,357,230 (-)	NCBI

RefSeq Acc Id:

XM_063265563 ⟹ XP_063121633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	22,309,616 - 22,377,744 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001263983	(Get FASTA)	NCBI Sequence Viewer
	XP_008756834	(Get FASTA)	NCBI Sequence Viewer
	XP_008756835	(Get FASTA)	NCBI Sequence Viewer
	XP_038936728	(Get FASTA)	NCBI Sequence Viewer
	XP_038936734	(Get FASTA)	NCBI Sequence Viewer
	XP_063121628	(Get FASTA)	NCBI Sequence Viewer
	XP_063121633	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH90022	(Get FASTA)	NCBI Sequence Viewer
	EDL87776	(Get FASTA)	NCBI Sequence Viewer
	EDL87777	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000036610
	ENSRNOP00000090175
	ENSRNOP00000111413
GenBank Protein	Q5EB59	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001263983 ⟸ NM_001277054

- UniProtKB:

Q5EB59 (UniProtKB/Swiss-Prot), A0A0H2UHV2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVPMETQLQSIFEEVVKTEIIEEAFPGMFMDTPEDEKTKLISCLAAFRQFWNGLSQESHEQCVQ
WIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRMVCESLINSDTLEWERTQLWALTFKLVRKI
IGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVIAYILERNACLLPAYFAVTEIRK
LYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAICNSWKLDPATLRFPLK
GLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQHKQRCPVLEDQLVDLVVYAMERSET
EEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVLSLHQKLAGRGLIKGRDHLMWVLLQFIS
GSIQKNALADFLPVMKLFDLLYPEKECIPVPDINKPQSTHAFAMTCIWIHLNRKAQNDNSKLQI
PIPHSLKLHHEFLQQSLRNKSLQMNDYKIALLCNAYSTNSECFTLPMGALVETIYGNGIMRVPL
PGTSCLASASVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHTKSSVALAPALVETYSRLLVY
MEIESLGIKGFISQLLPTVFKSHAWGILHTLLEMFSHRMHHIQPHYRVQLLSHLHTLAAVAQTN
QNQLHLCVESTALRLITALGSSEVQPQFTRFLNDPKTVLSAESEELNRALILTLARATHVTDFF
TGSDSIQGTWCKDILQTIMTFTPHNWASHTLSCFPAPLQAFFKQNNVPQESRFNLKKNVEEEYR
KWKSMTDENEIITQFSMQGFPPLFLCLLWKMLLETDHISQIGYKVLERIGARALVAHVRTFADF
LVYEFSTSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKP
NDFRNRVSDFVKENSPEHWLQSDWHTKHMSYHKKYPEKLYFEGLAEQVDPPVPIQSPYLPIYFG
NVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMCLRNRDH
LKRKLVHAIIGSLKDNRPQGWCLSDTYLKHAMNAREDNPWVPEDSYYCKLIGRLVDTMAGKSPG
PFPNCDWRFNEFPNPAAHALHVTCVELMALAVPGKDVGNALLNVVLKSQPLVPRENITAWMNAI
GLIITALPEPYWIVLHDRIVSVISSSSLTSETEWVGYPFRLFDFTACHQSYSEMSCSYTLALAH
AVWHHSSIGQLSLIPKFLTEVLLPVVKTEFQLLYVYHLVGPFLQRFQQERTRCMIEIGVAFYDM
LLNVDQCSTHLNYMDPICDFLYHMKYMFTGDSVKEQVEKIICNLKPALKLRLRFITHISKMEPA
VPPQALSSGSPAPQANQVPTALPVTQ

hide sequence

RefSeq Acc Id:	XP_008756834 ⟸ XM_008758612
- Peptide Label:	isoform X1
- UniProtKB:	Q5EB59 (UniProtKB/Swiss-Prot), A0A8I6A9J3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVPMETQLQSIFEEVVKTEIIEEAFPGMFMDTPEDEKTKLISCLAAFRQFWNGLSQESHEQCVQ WIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRMVCESLINSDTLEWERTQLWALTFKLVRKI IGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVIAYILERNACLLPAYFAVTEIRK LYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAICNSWKLDPATLRFPLK GLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQTLNIAQHKQRCPVLEDQLVDLVVYA MERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVLSLHQKLAGRGLIKGRDHLMWV LLQFISGSIQKNALADFLPVMKLFDLLYPEKECIPVPDINKPQSTHAFAMTCIWIHLNRKAQND NSKLQIPIPHSLKLHHEFLQQSLRNKSLQMNDYKIALLCNAYSTNSECFTLPMGALVETIYGNG IMRVPLPGTSCLASASVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHTKSSVALAPALVETY SRLLVYMEIESLGIKGFISQLLPTVFKSHAWGILHTLLEMFSHRMHHIQPHYRVQLLSHLHTLA AVAQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLNDPKTVLSAESEELNRALILTLARAT HVTDFFTGSDSIQGTWCKDILQTIMTFTPHNWASHTLSCFPAPLQAFFKQNNVPQESRFNLKKN VEEEYRKWKSMTDENEIITQFSMQGFPPLFLCLLWKMLLETDHISQIGYKVLERIGARALVAHV RTFADFLVYEFSTSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQ LLLLKPNDFRNRVSDFVKENSPEHWLQSDWHTKHMSYHKKYPEKLYFEGLAEQVDPPVPIQSPY LPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMC LRNRDHLKRKLVHAIIGSLKDNRPQGWCLSDTYLKHAMNAREDNPWVPEDSYYCKLIGRLVDTM AGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVPGKDVGNALLNVVLKSQPLVPRENIT AWMNAIGLIITALPEPYWIVLHDRIVSVISSSSLTSETEWVGYPFRLFDFTACHQSYSEMSCSY TLALAHAVWHHSSIGQLSLIPKFLTEVLLPVVKTEFQLLYVYHLVGPFLQRFQQERTRCMIEIG VAFYDMLLNVDQCSTHLNYMDPICDFLYHMKYMFTGDSVKEQVEKIICNLKPALKLRLRFITHI SKMEPAVPPQALSSGSPAPQANQVPTALPVTQ hide sequence

RefSeq Acc Id:	XP_008756835 ⟸ XM_008758613
- Peptide Label:	isoform X5
- UniProtKB:	Q5EB59 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVPMETQLQSIFEEVVKTEIIEEAFPGMFMDTPEDEKTKLISCLAAFRQFWNGLSQESHEQCVQ WIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRMVCESLINSDTLEWERTQLWALTFKLVRKI IGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVIAYILERNACLLPAYFAVTEIRK LYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAICNSWKLDPATLRFPLK GLLPYDKHKQRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASF PHMVLSLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKECIPVPD INKPQSTHAFAMTCIWIHLNRKAQNDNSKLQIPIPHSLKLHHEFLQQSLRNKSLQMNDYKIALL CNAYSTNSECFTLPMGALVETIYGNGIMRVPLPGTSCLASASVTPLPMNLLDSLTVHAKMSLIH SIATRVIKLAHTKSSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFKSHAWGILHTLL EMFSHRMHHIQPHYRVQLLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFL NDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMTFTPHNWASHTLS CFPAPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIITQFSMQGFPPLFLCLLWKML LETDHISQIGYKVLERIGARALVAHVRTFADFLVYEFSTSAGGQQLNKCIEILNDMVWKYNIVT LDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDFVKENSPEHWLQSDWHTKHMSYH KKYPEKLYFEGLAEQVDPPVPIQSPYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLD HLGGLYKFHDRPVTYLYNTLHYYEMCLRNRDHLKRKLVHAIIGSLKDNRPQGWCLSDTYLKHAM NAREDNPWVPEDSYYCKLIGRLVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAV PGKDVGNALLNVVLKSQPLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVSVISSSSLTSET EWVGYPFRLFDFTACHQSYSEMSCSYTLALAHAVWHHSSIGQLSLIPKFLTEVLLPVVKTEFQL LYVYHLVGPFLQRFQQERTRCMIEIGVAFYDMLLNVDQCSTHLNYMDPICDFLYHMKYMFTGDS VKEQVEKIICNLKPALKLRLRFITHISKMEPAVPPQALSSGSPAPQANQVPTALPVTQ hide sequence

Ensembl Acc Id:

ENSRNOP00000036610 ⟸ ENSRNOT00000032424

RefSeq Acc Id:	XP_038936728 ⟸ XM_039080800
- Peptide Label:	isoform X2
- UniProtKB:	Q5EB59 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038936734 ⟸ XM_039080806
- Peptide Label:	isoform X3
- UniProtKB:	Q5EB59 (UniProtKB/Swiss-Prot), A0A0H2UHV2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000078850 ⟸ ENSRNOT00000104432

Ensembl Acc Id:

ENSRNOP00000090175 ⟸ ENSRNOT00000097341

RefSeq Acc Id:	XP_063121633 ⟸ XM_063265563
- Peptide Label:	isoform X4
- UniProtKB:	Q5EB59 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063121628 ⟸ XM_063265558
- Peptide Label:	isoform X1
- UniProtKB:	Q5EB59 (UniProtKB/Swiss-Prot), A0A8I6A9J3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000111413 ⟸ ENSRNOT00000158273

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5EB59-F1-model_v2	AlphaFold	Q5EB59	1-1367	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689525

Promoter ID:

EPDNEW_R49

Type:

initiation region

Name:

Med23_1

Description:

mediator complex subunit 23

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	21,586,892 - 21,586,952	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307671	AgrOrtholog
BioCyc Gene	G2FUF-62120	BioCyc
Ensembl Genes	ENSRNOG00000013422	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000032424	ENTREZGENE
	ENSRNOT00000097341	ENTREZGENE
	ENSRNOT00000158273	ENTREZGENE
IMAGE_CLONE	IMAGE:7325957	IMAGE-MGC_LOAD
InterPro	Mediator_Med23	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109560	IMAGE-MGC_LOAD
NCBI Gene	309565	ENTREZGENE
PANTHER	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23	UniProtKB/Swiss-Prot
	PTHR12691	UniProtKB/Swiss-Prot
Pfam	Med23	UniProtKB/Swiss-Prot
PhenoGen	Med23	PhenoGen
RatGTEx	ENSRNOG00000013422	RatGTEx
UniProt	A0A0H2UHV2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A9J3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G3Z5_RAT	UniProtKB/TrEMBL
	A0ABK0M6U8_RAT	UniProtKB/TrEMBL
	MED23_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-03	Med23	mediator complex subunit 23	Crsp3	cofactor required for Sp1 transcriptional activation, subunit 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Crsp3	cofactor required for Sp1 transcriptional activation, subunit 3	Crsp3_predicted	cofactor required for Sp1 transcriptional activation, subunit 3 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Crsp3_predicted	cofactor required for Sp1 transcriptional activation, subunit 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

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RGD Manual Annotations