Adsl (adenylosuccinate lyase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Adsl (adenylosuccinate lyase) Rattus norvegicus
Analyze
Symbol: Adsl
Name: adenylosuccinate lyase
RGD ID: 1307617
Description: Enables (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity; and identical protein binding activity. Involved in several processes, including AMP biosynthetic process; response to hypoxia; and response to muscle activity. Predicted to be part of protein-containing complex. Predicted to be active in cytosol. Biomarker of breast cancer. Human ortholog(s) of this gene implicated in adenylosuccinase lyase deficiency. Orthologous to human ADSL (adenylosuccinate lyase); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC315150
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87114,359,440 - 114,383,618 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7114,359,440 - 114,384,872 (+)EnsemblGRCr8
mRatBN7.27112,479,256 - 112,503,439 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7112,479,271 - 112,503,760 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7114,234,797 - 114,258,837 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07116,458,339 - 116,482,381 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07116,427,712 - 116,451,754 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07122,157,201 - 122,192,328 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7122,157,201 - 122,192,328 (+)Ensemblrn6Rnor6.0
Rnor_5.07122,148,984 - 122,176,665 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47119,223,582 - 119,248,151 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7108,802,820 - 108,827,084 (+)NCBICelera
RGSC_v3.17119,257,809 - 119,282,215 (+)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzene-1,2,4-triol  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
haloperidol  (ISO)
hydralazine  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA,IEA,ISO)
protein-containing complex  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Effect of diet on adenylosuccinase activity in various organs of rat and chicken. Brand LM and Lowenstein JM, J Biol Chem. 1978 Oct 10;253(19):6872-8.
2. Pediatric neurological syndromes and inborn errors of purine metabolism. Camici M, etal., Neurochem Int. 2010 Feb;56(3):367-78. Epub 2009 Dec 11.
3. Purification of adenylosuccinate lyase from rat skeletal muscle by a novel affinity column. Stabilization of the enzyme, and effects of anions and fluoro analogues of the substrate. Casey PJ and Lowenstein JM, Biochem J. 1987 Sep 1;246(2):263-9.
4. Metabolism of threo-beta-fluoroaspartate by H4 cells. Inhibition of adenylosuccinate lyase by fluoro analogs of its substrates. Casey PJ, etal., J Biol Chem. 1986 Oct 15;261(29):13637-42.
5. Importance of purine nucleotide cycle to energy production in skeletal muscle. Flanagan WF, etal., Am J Physiol. 1986 Nov;251(5 Pt 1):C795-802.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. Adenine nucleotide metabolism in hearts of diabetic rats. Comparison to diaphragm, liver, and kidney. Jenkins RL, etal., Diabetes. 1988 May;37(5):629-36.
9. A comparison of succinyladenylate lyase activity and serum sialic acid as markers of malignancy. Mack DO, etal., Biochem Med. 1985 Dec;34(3):327-34.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
13. Adenylosuccinate lyase as an indicator of breast and prostate malignancies: a preliminary report. Reed VL, etal., Clin Biochem. 1987 Oct;20(5):349-51.
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. A comparison of hepatic adenylosuccinate lyase from rats fed either a chow diet or a semisynthetic basal diet low in riboflavin. Smith LD, etal., Int J Biochem. 1982;14(10):875-8.
17. Purine nucleotide cycle in rat renal cortex and medulla under conditions that mimic normal and low oxygen supply. Stepinski J, etal., Kidney Int. 1996 Oct;50(4):1195-201.
Additional References at PubMed
PMID:10888601   PMID:11428554   PMID:16973378   PMID:18614015   PMID:28131823  


Genomics

Comparative Map Data
Adsl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87114,359,440 - 114,383,618 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7114,359,440 - 114,384,872 (+)EnsemblGRCr8
mRatBN7.27112,479,256 - 112,503,439 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7112,479,271 - 112,503,760 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7114,234,797 - 114,258,837 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07116,458,339 - 116,482,381 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07116,427,712 - 116,451,754 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07122,157,201 - 122,192,328 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7122,157,201 - 122,192,328 (+)Ensemblrn6Rnor6.0
Rnor_5.07122,148,984 - 122,176,665 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47119,223,582 - 119,248,151 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7108,802,820 - 108,827,084 (+)NCBICelera
RGSC_v3.17119,257,809 - 119,282,215 (+)NCBI
Cytogenetic Map7q34NCBI
ADSL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,346,500 - 40,387,527 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,346,461 - 40,390,463 (+)Ensemblhg38GRCh38
GRCh372240,742,504 - 40,783,531 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362239,072,509 - 39,092,698 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342239,067,062 - 39,087,251NCBI
Celera2224,544,565 - 24,564,639 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2223,705,707 - 23,725,685 (+)NCBIHuRef
CHM1_12240,701,395 - 40,721,469 (+)NCBICHM1_1
T2T-CHM13v2.02240,817,910 - 40,858,924 (+)NCBIT2T-CHM13v2.0
Adsl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391580,832,691 - 80,855,148 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1580,832,691 - 80,855,147 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381580,948,490 - 80,970,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1580,948,490 - 80,970,946 (+)Ensemblmm10GRCm38
MGSCv371580,778,949 - 80,799,803 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361580,775,774 - 80,796,628 (+)NCBIMGSCv36mm8
Celera1583,069,002 - 83,089,662 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.95NCBI
Adsl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541326,067,516 - 26,088,527 (+)Ensembl
ChiLan1.0NW_00495541326,067,463 - 26,084,669 (+)NCBIChiLan1.0ChiLan1.0
ADSL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22350,190,503 - 50,215,545 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12252,886,106 - 52,910,029 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02221,249,920 - 21,271,749 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12239,068,864 - 39,090,418 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2239,068,764 - 39,389,221 (+)EnsemblpanPan2panpan1.1
ADSL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11024,813,854 - 24,832,115 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1024,748,849 - 24,767,156 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01025,564,321 - 25,582,627 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1025,564,251 - 25,582,606 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11025,276,233 - 25,290,696 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01025,598,775 - 25,617,073 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01025,773,156 - 25,791,459 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Adsl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049458,413,366 - 8,430,396 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364921,423,697 - 1,440,856 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364921,423,780 - 1,440,825 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADSL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,025,508 - 8,047,603 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.158,027,799 - 8,045,480 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.255,260,243 - 5,278,007 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADSL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11922,920,971 - 22,940,468 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045102,650,098 - 102,671,844 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adsl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247528,098,088 - 8,118,091 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247528,098,612 - 8,117,635 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Adsl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11250,698,722 - 250,719,763 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Adsl
142 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:49
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000025193
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
AI172062  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27112,503,103 - 112,503,265 (+)MAPPERmRatBN7.2
Rnor_6.07122,191,993 - 122,192,154NCBIRnor6.0
Rnor_5.07122,176,330 - 122,176,491UniSTSRnor5.0
RGSC_v3.47119,247,816 - 119,247,977UniSTSRGSC3.4
Celera7108,826,749 - 108,826,910UniSTS
RH 3.4 Map7877.7UniSTS
Cytogenetic Map7q34UniSTS
RH130035  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2235,999,363 - 35,999,551 (+)MAPPERmRatBN7.2
mRatBN7.27112,484,367 - 112,484,555 (+)MAPPERmRatBN7.2
Rnor_6.07122,164,300 - 122,164,487NCBIRnor6.0
Rnor_5.07122,156,108 - 122,156,295UniSTSRnor5.0
RGSC_v3.47119,228,689 - 119,228,876UniSTSRGSC3.4
RGSC_v3.4235,849,204 - 35,849,391UniSTSRGSC3.4
Celera7108,807,930 - 108,808,117UniSTS
Celera231,955,437 - 31,955,624UniSTS
RH 3.4 Map7874.7UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map7q34UniSTS
BI296865  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2236,001,246 - 36,001,444 (+)MAPPERmRatBN7.2
Rnor_6.07122,166,183 - 122,166,380NCBIRnor6.0
Rnor_5.07122,157,991 - 122,158,188UniSTSRnor5.0
RGSC_v3.4235,851,087 - 35,851,284UniSTSRGSC3.4
Celera231,957,320 - 31,957,517UniSTS
RH 3.4 Map2148.7UniSTS
Cytogenetic Map7q34UniSTS
RH137134  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27112,503,169 - 112,503,372 (+)MAPPERmRatBN7.2
Rnor_6.07122,192,059 - 122,192,261NCBIRnor6.0
Rnor_5.07122,176,396 - 122,176,598UniSTSRnor5.0
RGSC_v3.47119,247,882 - 119,248,084UniSTSRGSC3.4
Celera7108,826,815 - 108,827,017UniSTS
Cytogenetic Map7q34UniSTS
RH140918  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27112,503,170 - 112,503,371 (+)MAPPERmRatBN7.2
Rnor_6.07122,192,060 - 122,192,260NCBIRnor6.0
Rnor_5.07122,176,397 - 122,176,597UniSTSRnor5.0
RGSC_v3.47119,247,883 - 119,248,083UniSTSRGSC3.4
Celera7108,826,816 - 108,827,016UniSTS
RH 3.4 Map7877.7UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000025193   ⟹   ENSRNOP00000025193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7114,359,444 - 114,374,830 (+)Ensembl
mRatBN7.2 Ensembl7112,479,280 - 112,503,380 (+)Ensembl
Rnor_6.0 Ensembl7122,157,201 - 122,192,328 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094841   ⟹   ENSRNOP00000091765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7114,359,449 - 114,384,872 (+)Ensembl
mRatBN7.2 Ensembl7112,479,297 - 112,503,760 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110086   ⟹   ENSRNOP00000081561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7114,359,449 - 114,384,872 (+)Ensembl
mRatBN7.2 Ensembl7112,479,297 - 112,503,760 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113152   ⟹   ENSRNOP00000094784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7112,479,297 - 112,503,349 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120130   ⟹   ENSRNOP00000077723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7114,359,440 - 114,383,162 (+)Ensembl
mRatBN7.2 Ensembl7112,479,271 - 112,503,378 (+)Ensembl
RefSeq Acc Id: NM_001130503   ⟹   NP_001123975
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87114,359,440 - 114,383,618 (+)NCBI
mRatBN7.27112,479,259 - 112,503,439 (+)NCBI
Rnor_6.07122,157,201 - 122,192,328 (+)NCBI
Rnor_5.07122,148,984 - 122,176,665 (+)NCBI
RGSC_v3.47119,223,582 - 119,248,151 (+)RGD
Celera7108,802,820 - 108,827,084 (+)RGD
Sequence:
RefSeq Acc Id: XM_063263618   ⟹   XP_063119688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87114,367,746 - 114,383,557 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001123975 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119688 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15741 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025193.7
  ENSRNOP00000077723.1
  ENSRNOP00000081561
  ENSRNOP00000081561.1
  ENSRNOP00000091765.1
RefSeq Acc Id: NP_001123975   ⟸   NM_001130503
- UniProtKB: A0A8I5ZTN5 (UniProtKB/TrEMBL),   A6HSY1 (UniProtKB/TrEMBL),   A0A8I6GJ79 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025193   ⟸   ENSRNOT00000025193
Ensembl Acc Id: ENSRNOP00000091765   ⟸   ENSRNOT00000094841
Ensembl Acc Id: ENSRNOP00000077723   ⟸   ENSRNOT00000120130
Ensembl Acc Id: ENSRNOP00000094784   ⟸   ENSRNOT00000113152
Ensembl Acc Id: ENSRNOP00000081561   ⟸   ENSRNOT00000110086
RefSeq Acc Id: XP_063119688   ⟸   XM_063263618
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZW08-F1-model_v2 AlphaFold D3ZW08 1-484 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695501
Promoter ID:EPDNEW_R6026
Type:initiation region
Name:Adsl_1
Description:adenylosuccinate lyase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07122,157,217 - 122,157,277EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307617 AgrOrtholog
BioCyc Gene G2FUF-32690 BioCyc
BioCyc Pathway PWY-7219 [adenosine ribonucleotides de novo biosynthesis] BioCyc
BioCyc Pathway Image PWY-7219 BioCyc
Ensembl Genes ENSRNOG00000018655 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025193.7 UniProtKB/TrEMBL
  ENSRNOT00000094841.2 UniProtKB/TrEMBL
  ENSRNOT00000110086 ENTREZGENE
  ENSRNOT00000110086.2 UniProtKB/TrEMBL
  ENSRNOT00000120130.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.275.10 UniProtKB/TrEMBL
  1.10.275.60 UniProtKB/TrEMBL
  6.10.250.1570 UniProtKB/TrEMBL
  Fumarase/aspartase (C-terminal domain) UniProtKB/TrEMBL
  Fumarase/aspartase (Central domain) UniProtKB/TrEMBL
InterPro AdenyloSucc_lyase_C_met/fun UniProtKB/TrEMBL
  Fumarase/histidase_N UniProtKB/TrEMBL
  Fumarate_lyase UniProtKB/TrEMBL
  Fumarate_lyase_CS UniProtKB/TrEMBL
  L-Aspartase-like UniProtKB/TrEMBL
  Lyase1_N UniProtKB/TrEMBL
  Pur_lyase UniProtKB/TrEMBL
KEGG Report rno:315150 UniProtKB/TrEMBL
NCBI Gene 315150 ENTREZGENE
PANTHER ADENYLOSUCCINATE LYASE UniProtKB/TrEMBL
  ADENYLOSUCCINATE LYASE UniProtKB/TrEMBL
Pfam ADSL_C UniProtKB/TrEMBL
  Lyase_1 UniProtKB/TrEMBL
PhenoGen Adsl PhenoGen
PRINTS ARGSUCLYASE UniProtKB/TrEMBL
  FUMRATELYASE UniProtKB/TrEMBL
PROSITE FUMARATE_LYASES UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018655 RatGTEx
SMART ADSL_C UniProtKB/TrEMBL
Superfamily-SCOP L-Aspartase-like UniProtKB/TrEMBL
UniProt A0A8I5Y1I4_RAT UniProtKB/TrEMBL
  A0A8I5ZTN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJ79 ENTREZGENE, UniProtKB/TrEMBL
  A6HSY1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZW08_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-06-02 Adsl  adenylosuccinate lyase  test  test  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-08     Adsl  adenylosuccinate lyase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Adsl  adenylosuccinate lyase  Adsl_predicted  adenylosuccinate lyase (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Adsl_predicted  adenylosuccinate lyase (predicted)      Symbol and Name status set to approved 70820 APPROVED