Ndufs2 (NADH:ubiquinone oxidoreductase core subunit S2) - Rat Genome Database

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Gene: Ndufs2 (NADH:ubiquinone oxidoreductase core subunit S2) Rattus norvegicus
Analyze
Symbol: Ndufs2
Name: NADH:ubiquinone oxidoreductase core subunit S2
RGD ID: 1307109
Description: Enables oxygen sensor activity. Contributes to NADH dehydrogenase (ubiquinone) activity. Involved in cellular response to oxygen levels and mitochondrial electron transport, NADH to ubiquinone. Located in mitochondrial inner membrane. Part of respiratory chain complex I. Human ortholog(s) of this gene implicated in Leigh disease; hypertrophic cardiomyopathy; inherited metabolic disorder; multiple sclerosis; and nuclear type mitochondrial complex I deficiency 6. Orthologous to human NDUFS2 (NADH:ubiquinone oxidoreductase core subunit S2); PARTICIPATES IN doxorubicin pharmacokinetics pathway; Alzheimer's disease pathway; Huntington's disease pathway; INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 2,2,2-tetramine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CI-49kD; complex I-49kD; LOC103690046; LOC289218; NADH dehydrogenase (ubiquinone) Fe-S protein 2; NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial; NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial-like; NADH-ubiquinone oxidoreductase 49 kDa subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,186,867 - 86,203,914 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1386,186,870 - 86,203,608 (-)EnsemblGRCr8
mRatBN7.21383,654,402 - 83,671,474 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1383,654,406 - 83,671,420 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1386,160,251 - 86,172,822 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01387,558,491 - 87,571,027 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01384,790,115 - 84,802,527 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01389,606,848 - 89,623,506 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1389,606,840 - 89,619,398 (-)Ensemblrn6Rnor6.0
Rnor_5.01394,233,713 - 94,250,285 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01395,769,663 - 95,770,563 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41387,124,431 - 87,137,497 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1383,285,589 - 83,298,039 (-)NCBICelera
RGSC_v3.11387,313,317 - 87,326,381 (-)NCBI
Cytogenetic Map13q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrial inner membrane  (IBA,IDA,IEA,ISO)
mitochondrion  (IEA,ISO)
respiratory chain complex I  (IBA,IDA,IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Diminished superoxide generation is associated with respiratory chain dysfunction and changes in the mitochondrial proteome of sensory neurons from diabetic rats. Akude E, etal., Diabetes. 2011 Jan;60(1):288-97. Epub 2010 Sep 28.
2. Investigation of the role of mitochondrial DNA in multiple sclerosis susceptibility. Ban M, etal., PLoS One. 2008 Aug 6;3(8):e2891.
3. Ndufs2, a Core Subunit of Mitochondrial Complex I, Is Essential for Acute Oxygen-Sensing and Hypoxic Pulmonary Vasoconstriction. Dunham-Snary KJ, etal., Circ Res. 2019 Jun 7;124(12):1727-1746. doi: 10.1161/CIRCRESAHA.118.314284. Epub 2019 Mar 29.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
7. Mutations in the complex I NDUFS2 gene of patients with cardiomyopathy and encephalomyopathy. Loeffen J, etal., Ann Neurol. 2001 Feb;49(2):195-201.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
12. GOA pipeline RGD automated data pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Comprehensive gene review and curation RGD comprehensive gene curation
16. The p.M292T NDUFS2 mutation causes complex I-deficient Leigh syndrome in multiple families. Tuppen HA, etal., Brain. 2010 Oct;133(10):2952-63. Epub 2010 Sep 6.
Additional References at PubMed
PMID:9585441   PMID:11112787   PMID:12477932   PMID:12611891   PMID:12857734   PMID:14651853   PMID:14749350   PMID:17209039   PMID:18614015   PMID:19725078   PMID:21700703   PMID:24746669  
PMID:29476059  


Genomics

Comparative Map Data
Ndufs2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,186,867 - 86,203,914 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1386,186,870 - 86,203,608 (-)EnsemblGRCr8
mRatBN7.21383,654,402 - 83,671,474 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1383,654,406 - 83,671,420 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1386,160,251 - 86,172,822 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01387,558,491 - 87,571,027 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01384,790,115 - 84,802,527 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01389,606,848 - 89,623,506 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1389,606,840 - 89,619,398 (-)Ensemblrn6Rnor6.0
Rnor_5.01394,233,713 - 94,250,285 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01395,769,663 - 95,770,563 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41387,124,431 - 87,137,497 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1383,285,589 - 83,298,039 (-)NCBICelera
RGSC_v3.11387,313,317 - 87,326,381 (-)NCBI
Cytogenetic Map13q24NCBI
NDUFS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,197,417 - 161,214,395 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,197,104 - 161,214,723 (+)Ensemblhg38GRCh38
GRCh371161,167,207 - 161,184,185 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,435,729 - 159,450,809 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341157,982,177 - 157,997,255NCBI
Celera1134,236,257 - 134,251,337 (+)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1132,526,050 - 132,541,132 (+)NCBIHuRef
CHM1_11162,565,343 - 162,580,438 (+)NCBICHM1_1
T2T-CHM13v2.01160,334,507 - 160,351,847 (+)NCBIT2T-CHM13v2.0
Ndufs2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,062,426 - 171,078,956 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,062,422 - 171,078,957 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm39 Ensembl1171,053,712 - 171,077,688 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381171,234,853 - 171,251,686 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,234,853 - 171,251,388 (-)Ensemblmm10GRCm38
MGSCv371173,164,991 - 173,177,243 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361173,071,535 - 173,083,787 (-)NCBIMGSCv36mm8
Celera1173,691,078 - 173,703,327 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.25NCBI
Ndufs2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,961,915 - 12,971,095 (+)Ensembl
ChiLan1.0NW_00495546812,961,873 - 12,971,278 (+)NCBIChiLan1.0ChiLan1.0
NDUFS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2188,637,595 - 88,654,983 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1188,327,913 - 88,341,098 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,609,822 - 136,626,851 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11140,526,690 - 140,538,705 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,526,690 - 140,538,705 (+)EnsemblpanPan2panpan1.1
NDUFS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,271,603 - 21,281,140 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,271,675 - 21,285,279 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3821,346,459 - 21,356,011 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03821,389,447 - 21,399,000 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3821,389,447 - 21,398,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13821,285,733 - 21,286,858 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03821,691,735 - 21,701,283 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,100,884 - 22,110,441 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ndufs2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,294,911 - 7,305,582 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936903499,300 - 514,893 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936903503,633 - 514,235 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,246,960 - 89,257,085 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1489,246,958 - 89,257,090 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,103,640 - 97,113,761 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1202,767,864 - 2,780,336 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl202,768,064 - 2,780,704 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660381,816,231 - 1,830,038 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufs2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624794172,707 - 185,073 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624794172,543 - 189,031 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ndufs2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11050,399,049 - 50,410,453 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ndufs2
91 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:118
Count of miRNA genes:98
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000058423
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137161080489333251Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137161080489333251Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137161080489333251Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136242459288113509Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000058423   ⟹   ENSRNOP00000055224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1386,186,870 - 86,203,608 (-)Ensembl
mRatBN7.2 Ensembl1383,654,406 - 83,671,420 (-)Ensembl
Rnor_6.0 Ensembl1389,606,840 - 89,619,398 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094027   ⟹   ENSRNOP00000090418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1386,186,870 - 86,199,403 (-)Ensembl
mRatBN7.2 Ensembl1383,654,406 - 83,671,420 (-)Ensembl
RefSeq Acc Id: NM_001011907   ⟹   NP_001011907
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,186,867 - 86,199,403 (-)NCBI
mRatBN7.21383,654,407 - 83,666,945 (-)NCBI
Rnor_6.01389,606,853 - 89,619,388 (-)NCBI
Rnor_5.01395,769,663 - 95,770,563 (-)NCBI
RGSC_v3.41387,124,431 - 87,137,497 (-)RGD
Celera1383,285,589 - 83,298,039 (-)RGD
Sequence:
RefSeq Acc Id: XM_063272123   ⟹   XP_063128193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,186,867 - 86,203,573 (-)NCBI
RefSeq Acc Id: XM_063272124   ⟹   XP_063128194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,186,867 - 86,200,289 (-)NCBI
RefSeq Acc Id: XM_063272125   ⟹   XP_063128195
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,186,867 - 86,203,913 (-)NCBI
RefSeq Acc Id: XM_063272126   ⟹   XP_063128196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,186,867 - 86,203,914 (-)NCBI
RefSeq Acc Id: XM_063272127   ⟹   XP_063128197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,186,867 - 86,203,571 (-)NCBI
RefSeq Acc Id: NP_001011907   ⟸   NM_001011907
- Peptide Label: precursor
- UniProtKB: Q641Y2 (UniProtKB/Swiss-Prot),   A0A8I6ABR8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000055224   ⟸   ENSRNOT00000058423
Ensembl Acc Id: ENSRNOP00000090418   ⟸   ENSRNOT00000094027
RefSeq Acc Id: XP_063128196   ⟸   XM_063272126
- Peptide Label: isoform X1
- UniProtKB: Q641Y2 (UniProtKB/Swiss-Prot),   A0A8I6ABR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128195   ⟸   XM_063272125
- Peptide Label: isoform X1
- UniProtKB: Q641Y2 (UniProtKB/Swiss-Prot),   A0A8I6ABR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128193   ⟸   XM_063272123
- Peptide Label: isoform X1
- UniProtKB: Q641Y2 (UniProtKB/Swiss-Prot),   A0A8I6ABR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128197   ⟸   XM_063272127
- Peptide Label: isoform X1
- UniProtKB: Q641Y2 (UniProtKB/Swiss-Prot),   A0A8I6ABR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128194   ⟸   XM_063272124
- Peptide Label: isoform X1
- UniProtKB: Q641Y2 (UniProtKB/Swiss-Prot),   A0A8I6ABR8 (UniProtKB/TrEMBL)
Protein Domains
NADH-quinone oxidoreductase subunit D

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q641Y2-F1-model_v2 AlphaFold Q641Y2 1-463 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698998
Promoter ID:EPDNEW_R9523
Type:multiple initiation site
Name:Ndufs2_1
Description:NADH:ubiquinone oxidoreductase core subunit S2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01389,619,409 - 89,619,469EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307109 AgrOrtholog
BioCyc Gene G2FUF-17381 BioCyc
BioCyc Pathway PWY-3781 [aerobic respiration I (cytochrome c)] BioCyc
BioCyc Pathway Image PWY-3781 BioCyc
Ensembl Genes ENSRNOG00000038372 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000058423 ENTREZGENE
  ENSRNOT00000058423.5 UniProtKB/Swiss-Prot
  ENSRNOT00000094027 ENTREZGENE
Gene3D-CATH 1.10.645.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7132777 IMAGE-MGC_LOAD
InterPro NADH_Q_OxRdtase_suD UniProtKB/Swiss-Prot
  NADH_UbQ_OxRdtase_49kDa_CS UniProtKB/Swiss-Prot
  NDH1_su_D/H UniProtKB/Swiss-Prot
  NiFe-Hase_large UniProtKB/Swiss-Prot
KEGG Report rno:289218 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95229 IMAGE-MGC_LOAD
NCBI Gene 289218 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 2, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR11993 UniProtKB/Swiss-Prot
Pfam Complex1_49kDa UniProtKB/Swiss-Prot
PhenoGen Ndufs2 PhenoGen
PROSITE COMPLEX1_49K UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000038372 RatGTEx
Superfamily-SCOP SSF56762 UniProtKB/Swiss-Prot
UniProt A0A8I6ABR8 ENTREZGENE, UniProtKB/TrEMBL
  NDUS2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ndufs2  NADH:ubiquinone oxidoreductase core subunit S2  LOC103690046  NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial-like  Data merged from RGD:9076367 737654 PROVISIONAL
2017-03-29 Ndufs2  NADH:ubiquinone oxidoreductase core subunit S2  Ndufs2  NADH dehydrogenase (ubiquinone) Fe-S protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103690046  NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Ndufs2  NADH dehydrogenase (ubiquinone) Fe-S protein 2  Ndufs2_predicted  NADH dehydrogenase (ubiquinone) Fe-S protein 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ndufs2_predicted  NADH dehydrogenase (ubiquinone) Fe-S protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED