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Gene-Chemical Interaction Annotations
Gene-Chemical Interaction AnnotationsTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 17alpha-ethynylestradiol | multiple interactions | ISO | RGD:1316108 | 6480464 | [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NDUFS2 mRNA | CTD | PMID:17942748 | 2,2,2-tetramine | multiple interactions | ISO | RGD:1307109 | 6480464 | Trientine inhibits the reaction [Streptozocin results in increased expression of NDUFS2 protein] | CTD | PMID:19634143 | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | ISO | RGD:1316108 | 6480464 | [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NDUFS2 mRNA | CTD | PMID:17942748 | 2,3,7,8-tetrachlorodibenzodioxine | decreases expression | EXP | | 6480464 | Tetrachlorodibenzodioxin results in decreased expression of NDUFS2 mRNA | CTD | PMID:23152189 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:1316108 | 6480464 | Tetrachlorodibenzodioxin affects the expression of NDUFS2 mRNA | CTD | PMID:21570461 | 2,3,7,8-tetrachlorodibenzodioxine | decreases expression | ISO | RGD:1307109 | 6480464 | Tetrachlorodibenzodioxin results in decreased expression of NDUFS2 mRNA | CTD | PMID:21215274 | 2,3,7,8-tetrachlorodibenzodioxine | increases expression | ISO | RGD:1316108 | 6480464 | Tetrachlorodibenzodioxin results in increased expression of NDUFS2 mRNA | CTD | PMID:20399798 | 4,4'-diaminodiphenylmethane | increases expression | ISO | RGD:1316108 | 6480464 | 4,4'-diaminodiphenylmethane results in increased expression of NDUFS2 mRNA | CTD | PMID:18648102 | arsenic atom | increases methylation | EXP | | 6480464 | Arsenic results in increased methylation of NDUFS2 promoter | CTD | PMID:21291286 | benzo[a]pyrene | increases expression | ISO | RGD:1316108 | 6480464 | Benzo(a)pyrene results in increased expression of NDUFS2 mRNA | CTD | PMID:22228805 | clofibrate | decreases expression | ISO | RGD:1316108 | 6480464 | Clofibrate results in decreased expression of NDUFS2 mRNA | CTD | PMID:17585979 | cocaine | affects expression | EXP | | 6480464 | Cocaine affects the expression of NDUFS2 protein | CTD | PMID:19393250 | copper(2+) sulfate | decreases expression | EXP | | 6480464 | Copper Sulfate results in decreased expression of NDUFS2 mRNA | CTD | PMID:19549813 | cyclophosphamide | decreases expression | ISO | RGD:1316108 | 6480464 | Cyclophosphamide results in decreased expression of NDUFS2 mRNA | CTD | PMID:15331540 | cyclosporin A | decreases expression | EXP | | 6480464 | Cyclosporine results in decreased expression of NDUFS2 mRNA | CTD | PMID:20106945 | diarsenic trioxide | increases expression | EXP | | 6480464 | arsenic trioxide results in increased expression of NDUFS2 mRNA | CTD | PMID:22521957 | hypochlorous acid | decreases expression | ISO | RGD:1316108 | 6480464 | Hypochlorous Acid results in decreased expression of NDUFS2 mRNA | CTD | PMID:19376150 | lead(0) | decreases expression | EXP | | 6480464 | Lead results in decreased expression of NDUFS2 mRNA | CTD | PMID:19921347 | menadione | affects expression | EXP | | 6480464 | Vitamin K 3 affects the expression of NDUFS2 mRNA | CTD | PMID:20044591 | mercury atom | decreases expression | EXP | | 6480464 | Mercury results in decreased expression of NDUFS2 mRNA | CTD | PMID:16823088 | mercury(0) | decreases expression | EXP | | 6480464 | Mercury results in decreased expression of NDUFS2 mRNA | CTD | PMID:16823088 | paracetamol | affects expression | ISO | RGD:1316108 | 6480464 | Acetaminophen affects the expression of NDUFS2 mRNA | CTD | PMID:17562736 | rosiglitazone | affects expression | ISO | RGD:1316108 | 6480464 | rosiglitazone affects the expression of NDUFS2 mRNA | CTD | PMID:22013433 | sodium fluoride | increases expression | ISO | RGD:1316108 | 6480464 | Sodium Fluoride results in increased expression of NDUFS2 mRNA | CTD | PMID:21340527 | streptozocin | multiple interactions | ISO | RGD:1307109 | 6480464 | Trientine inhibits the reaction [Streptozocin results in increased expression of NDUFS2 protein] | CTD | PMID:19634143 | streptozocin | increases expression | ISO | RGD:1307109 | 6480464 | Streptozocin results in increased expression of NDUFS2 protein | CTD | PMID:19634143 | zidovudine | decreases expression | EXP | | 6480464 | Zidovudine results in decreased expression of NDUFS2 mRNA | CTD | PMID:16894629 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Molecular Pathway Annotations| External Database Links | |
| KEGG Pathway | Alzheimer's disease |
| Huntington's disease | |
| Metabolic pathways | |
| Oxidative phosphorylation | |
| Parkinson's disease | |
| Pathway Interaction Database | p73 transcription factor network (PID:200017) |
Disease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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| External Database Links | |
| KEGG Pathway | Alzheimer's disease |
| Huntington's disease | |
| Metabolic pathways | |
| Oxidative phosphorylation | |
| Parkinson's disease | |
| Pathway Interaction Database | p73 transcription factor network (PID:200017) |
References - curated| 1. |
Akude E, etal., Diabetes. 2011 Jan;60(1):288-97. Epub 2010 Sep 28. |
| 2. |
Ban M, etal., PLoS One. 2008 Aug 6;3(8):e2891. |
| 3. |
GOA_HUMAN data from the GO Consortium |
| 4. |
KEGG |
| 5. |
Loeffen J, etal., Ann Neurol. 2001 Feb;49(2):195-201. |
| 6. |
Pipeline to import KEGG annotations from KEGG into RGD Pathway Ontology |
| 7. |
RGD automated import pipeline for gene-chemical interactions |
| 8. |
RGD Automated Pipelines |
| 9. |
Tuppen HA, etal., Brain. 2010 Oct;133(10):2952-63. Epub 2010 Sep 6. |
References - uncurated| PubMed | 11112787 |
| 12477932 | |
| 12611891 | |
| 12857734 | |
| 14749350 | |
| 15250827 | |
| 15489334 | |
| 16806233 | |
| 17209039 | |
| 17314511 | |
| 17601350 | |
| 17725712 | |
| 1832859 | |
| 18977241 | |
| 19064571 | |
| 19423540 | |
| 19463981 | |
| 19615732 | |
| 19688755 | |
| 19913121 | |
| 20186120 | |
| 20237496 | |
| 20406964 | |
| 20438785 | |
| 20628086 | |
| 20877624 | |
| 21139048 | |
| 21145461 | |
| 21832049 | |
| 21900206 | |
| 21906983 | |
| 22036843 | |
| 22797925 | |
| 22939629 | |
| 8125298 | |
| 8889548 | |
| 9585441 | |
| 9647766 | |
| 9878551 |
RGD Disease Portals| NDUFS2 has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| NDUFS2 (Homo sapiens) |
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| Ndufs2 (Mus musculus) |
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| Ndufs2 (Rattus norvegicus) |
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Position Markers| RH119317 |
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| RH70304 |
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QTLs in Region (Human Genome Assembly GRCh37)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NG_013352 | (Get FASTA) | Search GEO for Microarray Profiles |
| NM_001166159 | (Get FASTA) | Search GEO for Microarray Profiles | |
| NM_004550 | (Get FASTA) | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | ABBA01016596 | (Get FASTA) | Search GEO for Microarray Profiles |
| AF013160 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF050640 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF183172 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF183173 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK222618 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK301641 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK309871 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK314807 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK315977 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL590714 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AMYH01001457 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC000170 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC001456 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC008868 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CA312786 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH471121 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_004550 | |||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_004541 | |||||||||||||||||||||||||
| Peptide Label: | isoform 1 precursor | |||||||||||||||||||||||||
| Position: |
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| RefSeq Acc Id: | NM_001166159 | ||||||||||||||||||||
| RefSeq Status: | REVIEWED | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Protein Acc Id: | NP_001159631 | ||||||||||||||||||||
| Peptide Label: | isoform 2 precursor | ||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_001159631 | (Get FASTA) |
| NP_004541 | (Get FASTA) | |
| GenBank Protein | AAC27453 | (Get FASTA) |
| AAC34362 | (Get FASTA) | |
| AAG13808 | (Get FASTA) | |
| AAG13809 | (Get FASTA) | |
| AAH00170 | (Get FASTA) | |
| AAH01456 | (Get FASTA) | |
| AAH08868 | (Get FASTA) | |
| ABM85013 | (Get FASTA) | |
| BAD96338 | (Get FASTA) | |
| BAH13528 | (Get FASTA) | |
| BAH14348 | (Get FASTA) | |
| EAW52625 | (Get FASTA) | |
| EAW52626 | (Get FASTA) | |
| O75306 | (Get FASTA) |
Promoters| RGD ID: | 6855248 | ||||||||||
| Promoter ID: | EPDNEW_H789 | ||||||||||
| Type: | initiation region | ||||||||||
| Name: | CCDC30_1 | ||||||||||
| Description: | coiled-coil domain containing 30 | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||||
| Position: |
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| RGD ID: | 6784557 | ||||||||||
| Promoter ID: | HG_KWN:5833 | ||||||||||
| Type: | CpG-Island | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | HeLa_S3, K562 | ||||||||||
| Transcripts: | OTTHUMT00000083015, OTTHUMT00000083066, UC001FYU.2 | ||||||||||
| Position: |
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| RGD ID: | 6785303 | ||||||||||
| Promoter ID: | HG_KWN:5834 | ||||||||||
| Type: | CpG-Island | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4 | ||||||||||
| Transcripts: | ENST00000392179, NM_001166159, OTTHUMT00000083018, OTTHUMT00000083019, OTTHUMT00000083021, OTTHUMT00000083022, UC001FYX.1 | ||||||||||
| Position: |
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| RGD ID: | 6851540 | ||||||||||
| Promoter ID: | EP73571 | ||||||||||
| Type: | initiation region | ||||||||||
| Name: | HS_NDUFS2 | ||||||||||
| Description: | NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa(NADH-coenzyme Q reductase). | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||||
| Experiment Methods: | NEDO full length human cDNA sequencing project.; Oligo-capping | ||||||||||
| Position: |
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| RGD ID: | 6786115 | ||||||||||
| Promoter ID: | HG_KWN:5836 | ||||||||||
| Type: | Non-CpG | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | Lymphoblastoid | ||||||||||
| Transcripts: | OTTHUMT00000083020 | ||||||||||
| Position: |
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| RGD ID: | 6786117 | ||||||||||
| Promoter ID: | HG_KWN:5837 | ||||||||||
| Type: | Non-CpG | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | CD4+TCell_12Hour, Lymphoblastoid | ||||||||||
| Transcripts: | OTTHUMT00000083023, OTTHUMT00000083025, OTTHUMT00000083028 | ||||||||||
| Position: |
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| RGD ID: | 6786116 | ||||||||||
| Promoter ID: | HG_KWN:5838 | ||||||||||
| Type: | Non-CpG | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | CD4+TCell, Lymphoblastoid | ||||||||||
| Transcripts: | OTTHUMT00000083024 | ||||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| COSMIC | NDUFS2 | COSMIC |
| Ensembl Genes | ENSG00000158864 | ENTREZGENE |
| Ensembl Protein | ENSP00000356972 | ENTREZGENE |
| ENSP00000376018 | ENTREZGENE | |
| Ensembl Transcript | ENST00000367993 | ENTREZGENE |
| ENST00000392179 | ENTREZGENE | |
| Entrez Gene | 4720 | ENTREZGENE |
| Germonline | ENSG00000158864 | |
| HGNC ID | 7708 | ENTREZGENE |
| HomoloGene Group ID | 56659 | ENTREZGENE |
| HPRD ID | 04285 | ENTREZGENE |
| InterPro | NADH_Q_OxRdtase_suD | UniProtKB/Swiss-Prot |
| NADH_UbQ_OxRdtase_49kDa_CS | UniProtKB/Swiss-Prot | |
| NDH1_su_D/H | UniProtKB/Swiss-Prot | |
| IPI | IPI00025239 | UniProtKB/Swiss-Prot |
| IPI00946334 | UniProtKB/TrEMBL | |
| IPI01014460 | UniProtKB/TrEMBL | |
| KEGG Report | hsa:4720 | ENTREZGENE, UniProtKB/Swiss-Prot |
| OMIM | 252010 | OMIM |
| 602985 | OMIM | |
| Pfam | Complex1_49kDa | UniProtKB/Swiss-Prot |
| PharmGKB | PA31519 | PharmGKB |
| PROSITE | COMPLEX1_49K | UniProtKB/Swiss-Prot |
| TIGRFAMs | NuoD | UniProtKB/Swiss-Prot |
| UniGene | Hs.173611 | ENTREZGENE |
| UniProt | B7Z792_HUMAN | UniProtKB/TrEMBL |
| B7Z9L2_HUMAN | UniProtKB/TrEMBL | |
| NDUS2_HUMAN | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2011-08-17 | NDUFS2 | NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) | NDUFS2 | NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) | Symbol and/or name change | 39860 | APPROVED |
| 2011-07-27 | NDUFS2 | NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) | NDUFS2 | NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) | Symbol and/or name change | 39860 | APPROVED |
| More on NDUFS2 | |||
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Entrez Gene | ||
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Ensembl Gene | ||
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HGNC Report | ||
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NCBI Map Viewer | ||
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Vista | ||
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Vista + UCSC | ||
| RGD Object Information | |
| RGD ID: | 1316107 |
| Created: | 2005-01-12 |
| Species: | Homo sapiens |
| Last Modified: | 2013-03-06 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




