Ppp2r5d (protein phosphatase 2, regulatory subunit B', delta) - Rat Genome Database

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Gene: Ppp2r5d (protein phosphatase 2, regulatory subunit B', delta) Rattus norvegicus
Analyze
Symbol: Ppp2r5d
Name: protein phosphatase 2, regulatory subunit B', delta
RGD ID: 1306666
Description: Predicted to enable protein phosphatase activator activity. Predicted to be involved in meiotic sister chromatid cohesion. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 35. Orthologous to human PPP2R5D (protein phosphatase 2 regulatory subunit B'delta); PARTICIPATES IN dopamine signaling pathway; interleukin-2 signaling pathway; mRNA decay pathway; INTERACTS WITH 2,6-dinitrotoluene; aconitine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100909464; LOC363193; protein phosphatase 2, regulatory subunit B (B56), delta isoform; protein phosphatase 2, regulatory subunit B', delta isoform; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8921,767,963 - 21,797,997 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl921,767,688 - 21,797,996 (+)EnsemblGRCr8
mRatBN7.2914,270,364 - 14,300,396 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,268,745 - 14,300,400 (+)EnsemblmRatBN7.2
Rnor_6.0916,580,995 - 16,610,425 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,586,803 - 16,609,631 (+)Ensemblrn6Rnor6.0
Rnor_5.0915,487,588 - 15,516,365 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4910,054,005 - 10,078,501 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera912,018,838 - 12,048,685 (+)NCBICelera
RGSC_v3.1910,052,322 - 10,075,842 (-)NCBI
Cytogenetic Map9q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA)
protein phosphatase type 2A complex  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Protein kinase A activates protein phosphatase 2A by phosphorylation of the B56delta subunit. Ahn JH, etal., Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2979-84. doi: 10.1073/pnas.0611532104. Epub 2007 Feb 14.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Mice lacking phosphatase PP2A subunit PR61/B'delta (Ppp2r5d) develop spatially restricted tauopathy by deregulation of CDK5 and GSK3beta. Louis JV, etal., Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):6957-62. doi: 10.1073/pnas.1018777108. Epub 2011 Apr 11.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13. DARPP-32, Jack of All Trades... Master of Which? Yger M and Girault JA, Front Behav Neurosci. 2011 Sep 8;5:56. doi: 10.3389/fnbeh.2011.00056. eCollection 2011.
Additional References at PubMed
PMID:18496528   PMID:19029245   PMID:24157919   PMID:29294329  


Genomics

Comparative Map Data
Ppp2r5d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8921,767,963 - 21,797,997 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl921,767,688 - 21,797,996 (+)EnsemblGRCr8
mRatBN7.2914,270,364 - 14,300,396 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,268,745 - 14,300,400 (+)EnsemblmRatBN7.2
Rnor_6.0916,580,995 - 16,610,425 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,586,803 - 16,609,631 (+)Ensemblrn6Rnor6.0
Rnor_5.0915,487,588 - 15,516,365 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4910,054,005 - 10,078,501 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera912,018,838 - 12,048,685 (+)NCBICelera
RGSC_v3.1910,052,322 - 10,075,842 (-)NCBI
Cytogenetic Map9q12NCBI
PPP2R5D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38642,984,570 - 43,012,342 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl642,984,538 - 43,012,346 (+)Ensemblhg38GRCh38
GRCh37642,952,308 - 42,980,080 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,060,308 - 43,088,058 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34643,060,307 - 43,088,056NCBI
Celera644,504,572 - 44,532,321 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef642,669,485 - 42,697,406 (+)NCBIHuRef
CHM1_1642,954,714 - 42,982,536 (+)NCBICHM1_1
T2T-CHM13v2.0642,813,692 - 42,841,440 (+)NCBIT2T-CHM13v2.0
Ppp2r5d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,993,917 - 47,015,952 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,993,917 - 47,016,037 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381746,682,991 - 46,705,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,682,991 - 46,705,111 (-)Ensemblmm10GRCm38
MGSCv371746,819,940 - 46,841,951 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361746,146,183 - 46,168,138 (-)NCBIMGSCv36mm8
Celera1750,118,859 - 50,140,684 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Ppp2r5d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,968,565 - 8,986,654 (+)Ensembl
ChiLan1.0NW_0049554378,968,517 - 8,987,680 (+)NCBIChiLan1.0ChiLan1.0
PPP2R5D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2557,484,522 - 57,512,462 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,354,769 - 53,382,702 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0642,576,759 - 42,604,609 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1643,871,939 - 43,899,183 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl643,871,915 - 43,899,183 (+)EnsemblpanPan2panpan1.1
PPP2R5D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,519,194 - 11,540,658 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,519,092 - 11,540,109 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1211,546,203 - 11,567,685 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01212,000,391 - 12,022,031 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,000,402 - 12,022,025 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11211,528,808 - 11,550,658 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01211,613,067 - 11,634,732 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01211,707,145 - 11,728,788 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ppp2r5d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,015,621 - 47,037,998 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,923,254 - 16,941,430 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,922,204 - 16,945,400 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP2R5D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,055,753 - 38,079,006 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1738,055,589 - 38,078,429 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,503,956 - 43,526,797 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP2R5D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11729,147,560 - 29,175,700 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1729,145,918 - 29,174,997 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604443,047,236 - 43,075,295 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp2r5d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,487,712 - 16,507,430 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475416,487,275 - 16,507,539 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ppp2r5d
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1483,159,402 - 83,181,829 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ppp2r5d
322 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:275
Count of miRNA genes:161
Interacting mature miRNAs:197
Transcripts:ENSRNOT00000022862
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9671488829567695Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)92103143049025574Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat

Markers in Region
UniSTS:143850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,349 - 14,300,580 (+)MAPPERmRatBN7.2
mRatBN7.21339,620,792 - 39,620,946 (+)MAPPERmRatBN7.2
Rnor_6.01344,837,513 - 44,837,666NCBIRnor6.0
Rnor_6.0916,610,379 - 16,610,609NCBIRnor6.0
Rnor_5.01349,922,685 - 49,922,838UniSTSRnor5.0
Rnor_5.0915,516,994 - 15,517,224UniSTSRnor5.0
RGSC_v3.41340,828,931 - 40,829,084UniSTSRGSC3.4
RGSC_v3.4910,053,825 - 10,054,055UniSTSRGSC3.4
Celera912,048,639 - 12,048,870UniSTS
Celera1339,994,958 - 39,995,111UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map13q12UniSTS
RH127839  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,319 - 14,300,530 (+)MAPPERmRatBN7.2
mRatBN7.21092,232,586 - 92,232,928 (+)MAPPERmRatBN7.2
Rnor_6.01095,502,312 - 95,502,653NCBIRnor6.0
Rnor_6.0916,610,349 - 16,610,559NCBIRnor6.0
Rnor_5.01095,237,195 - 95,237,536UniSTSRnor5.0
Rnor_5.0915,516,964 - 15,517,174UniSTSRnor5.0
RGSC_v3.41096,661,306 - 96,661,647UniSTSRGSC3.4
RGSC_v3.4910,053,875 - 10,054,085UniSTSRGSC3.4
Celera912,048,609 - 12,048,820UniSTS
Celera1090,898,167 - 90,898,508UniSTS
RH 3.4 Map953.1UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map10q32.1UniSTS
RH129717  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,100 - 14,300,315 (+)MAPPERmRatBN7.2
Rnor_6.0916,610,130 - 16,610,344NCBIRnor6.0
Rnor_5.0915,516,745 - 15,516,959UniSTSRnor5.0
RGSC_v3.4910,054,090 - 10,054,304UniSTSRGSC3.4
Celera912,048,390 - 12,048,604UniSTS
RH 3.4 Map955.0UniSTS
Cytogenetic Map9q12UniSTS
RH144000  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8921,793,018 - 21,793,345 (+)Marker Load Pipeline
mRatBN7.2914,295,417 - 14,295,744 (-)MAPPERmRatBN7.2
mRatBN7.2914,295,417 - 14,295,744 (+)MAPPERmRatBN7.2
Rnor_6.0916,605,447 - 16,605,773NCBIRnor6.0
Rnor_6.09605,596 - 605,922NCBIRnor6.0
Rnor_5.09589,873 - 590,199UniSTSRnor5.0
Rnor_5.0915,512,062 - 15,512,388UniSTSRnor5.0
RGSC_v3.4910,058,661 - 10,058,987UniSTSRGSC3.4
Celera912,043,707 - 12,044,033UniSTS
Cytogenetic Map9q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000022862   ⟹   ENSRNOP00000022862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl921,767,688 - 21,797,996 (+)Ensembl
mRatBN7.2 Ensembl914,276,176 - 14,300,336 (+)Ensembl
Rnor_6.0 Ensembl916,586,803 - 16,609,631 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108773   ⟹   ENSRNOP00000086619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl921,767,955 - 21,797,996 (+)Ensembl
mRatBN7.2 Ensembl914,268,745 - 14,300,400 (+)Ensembl
RefSeq Acc Id: NM_001427099   ⟹   NP_001414028
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,773,753 - 21,797,997 (+)NCBI
RefSeq Acc Id: XM_001062510   ⟹   XP_001062510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,767,968 - 21,797,997 (+)NCBI
mRatBN7.2914,270,371 - 14,300,396 (+)NCBI
Rnor_6.0916,581,003 - 16,610,425 (+)NCBI
Rnor_5.0915,487,588 - 15,516,365 (+)NCBI
RGSC_v3.4910,054,005 - 10,078,501 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244570   ⟹   XP_006244632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,767,976 - 21,797,997 (+)NCBI
mRatBN7.2914,270,375 - 14,300,396 (+)NCBI
Rnor_6.0916,581,003 - 16,610,425 (+)NCBI
Rnor_5.0915,487,588 - 15,516,365 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596731   ⟹   XP_017452220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,767,967 - 21,797,997 (+)NCBI
mRatBN7.2914,270,364 - 14,300,396 (+)NCBI
Rnor_6.0916,580,995 - 16,610,425 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063267359   ⟹   XP_063123429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,767,963 - 21,797,997 (+)NCBI
RefSeq Acc Id: XP_001062510   ⟸   XM_001062510
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A6K6 (UniProtKB/TrEMBL),   Q499R1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244632   ⟸   XM_006244570
- Peptide Label: isoform X1
- UniProtKB: Q499R1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452220   ⟸   XM_017596731
- Peptide Label: isoform X1
- UniProtKB: Q499R1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022862   ⟸   ENSRNOT00000022862
Ensembl Acc Id: ENSRNOP00000086619   ⟸   ENSRNOT00000108773
RefSeq Acc Id: XP_063123429   ⟸   XM_063267359
- Peptide Label: isoform X2
- UniProtKB: Q499R1 (UniProtKB/TrEMBL),   A0A8I6A6K6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414028   ⟸   NM_001427099
- UniProtKB: F1MAA3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAA3-F1-model_v2 AlphaFold F1MAA3 1-595 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696512
Promoter ID:EPDNEW_R7032
Type:initiation region
Name:Ppp2r5d_1
Description:protein phosphatase 2, regulatory subunit B', delta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0916,586,796 - 16,586,856EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306666 AgrOrtholog
BioCyc Gene G2FUF-28240 BioCyc
Ensembl Genes ENSRNOG00000016849 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022862 ENTREZGENE
  ENSRNOT00000022862.8 UniProtKB/TrEMBL
  ENSRNOT00000108773 ENTREZGENE
  ENSRNOT00000108773.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7936565 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  PP2A_B56 UniProtKB/TrEMBL
MGC_CLONE MGC:124849 IMAGE-MGC_LOAD
NCBI Gene 363193 ENTREZGENE
PANTHER B56 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 56 KDA REGULATORY SUBUNIT DELTA ISOFORM UniProtKB/TrEMBL
Pfam B56 UniProtKB/TrEMBL
PhenoGen Ppp2r5d PhenoGen
PIRSF PP2A_B56 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016849 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6A6K6 ENTREZGENE, UniProtKB/TrEMBL
  F1MAA3 ENTREZGENE, UniProtKB/TrEMBL
  Q499R1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ppp2r5d  protein phosphatase 2, regulatory subunit B', delta  LOC100909464  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like  Data merged from RGD:6503701 737654 PROVISIONAL
2012-07-05 LOC100909464  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2011-08-02 Ppp2r5d  protein phosphatase 2, regulatory subunit B', delta  Ppp2r5d  protein phosphatase 2, regulatory subunit B', delta isoform  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-15 Ppp2r5d  protein phosphatase 2, regulatory subunit B', delta isoform  Ppp2r5d  protein phosphatase 2, regulatory subunit B (B56), delta isoform  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Ppp2r5d  protein phosphatase 2, regulatory subunit B (B56), delta isoform  Ppp2r5d_predicted  protein phosphatase 2, regulatory subunit B (B56), delta isoform (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ppp2r5d_predicted  protein phosphatase 2, regulatory subunit B (B56), delta isoform (predicted)      Symbol and Name status set to approved 70820 APPROVED