Tfdp2 (transcription factor Dp-2) - Rat Genome Database

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Gene: Tfdp2 (transcription factor Dp-2) Rattus norvegicus
Analyze
Symbol: Tfdp2
Name: transcription factor Dp-2
RGD ID: 1305814
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and protein domain specific binding activity. Predicted to contribute to DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in heart development. Predicted to be part of RNA polymerase II transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TFDP2 (transcription factor Dp-2); PARTICIPATES IN cell cycle pathway, mitotic; INTERACTS WITH 6-propyl-2-thiouracil; acetamide; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC300947; Tcfdp2; transcription factor Dp 2; transcription factor Dp-2 (E2F dimerization partner 2)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Tfdp2em2Mcwi ; Tfdp2em5Mcwi ; Tfdp2em6Mcwi
Genetic Models: SS-Tfdp2em6Mcwi ; SS-Tfdp2em5Mcwi ; SS-Tfdp2em2Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88105,640,018 - 105,781,026 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8105,640,033 - 105,781,001 (+)EnsemblGRCr8
mRatBN7.2896,760,459 - 96,901,466 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl896,760,504 - 96,896,682 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8102,492,141 - 102,561,853 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08100,691,381 - 100,761,102 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0898,530,341 - 98,600,062 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08104,040,795 - 104,181,228 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,040,934 - 104,176,446 (+)Ensemblrn6Rnor6.0
Rnor_5.08103,489,105 - 103,629,520 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48101,256,112 - 101,392,512 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera896,270,697 - 96,340,157 (+)NCBICelera
RGSC_v3.18101,310,838 - 101,410,858 (+)NCBI
Cytogenetic Map8q31NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-butoxyethanol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphotericin B  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper(II) chloride  (ISO)
cordycepin  (ISO)
crocidolite asbestos  (ISO)
diallyl disulfide  (EXP)
diazinon  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dieldrin  (EXP)
diethylstilbestrol  (EXP,ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
isoprenaline  (ISO)
isotretinoin  (ISO)
ketoconazole  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
N(6)-dimethylallyladenine  (ISO)
naled  (ISO)
nickel atom  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
p-menthan-3-ol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silver(1+) nitrate  (ISO)
sodium arsenate  (ISO)
Soman  (EXP)
succimer  (ISO)
sulfadimethoxine  (EXP)
tamibarotene  (ISO)
tamoxifen  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
tremolite asbestos  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
triptonide  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Inhibition of E2F abrogates the development of cardiac myocyte hypertrophy. Vara D, etal., J Biol Chem. 2003 Jun 13;278(24):21388-94. Epub 2003 Apr 6.
Additional References at PubMed
PMID:7739537   PMID:9501179   PMID:11591818   PMID:12477932   PMID:16360038   PMID:20176812  


Genomics

Comparative Map Data
Tfdp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88105,640,018 - 105,781,026 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8105,640,033 - 105,781,001 (+)EnsemblGRCr8
mRatBN7.2896,760,459 - 96,901,466 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl896,760,504 - 96,896,682 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8102,492,141 - 102,561,853 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08100,691,381 - 100,761,102 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0898,530,341 - 98,600,062 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08104,040,795 - 104,181,228 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,040,934 - 104,176,446 (+)Ensemblrn6Rnor6.0
Rnor_5.08103,489,105 - 103,629,520 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48101,256,112 - 101,392,512 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera896,270,697 - 96,340,157 (+)NCBICelera
RGSC_v3.18101,310,838 - 101,410,858 (+)NCBI
Cytogenetic Map8q31NCBI
TFDP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383141,944,428 - 142,149,544 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3141,944,428 - 142,149,544 (-)Ensemblhg38GRCh38
GRCh373141,663,270 - 141,868,386 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363143,154,018 - 143,207,067 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343143,153,041 - 143,230,148NCBI
Celera3140,087,011 - 140,291,943 (-)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3139,036,150 - 139,241,398 (-)NCBIHuRef
CHM1_13141,626,317 - 141,831,403 (-)NCBICHM1_1
T2T-CHM13v2.03144,691,750 - 144,896,866 (-)NCBIT2T-CHM13v2.0
Tfdp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39996,078,348 - 96,205,699 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl996,078,328 - 96,205,699 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38996,196,246 - 96,323,646 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl996,196,275 - 96,323,646 (+)Ensemblmm10GRCm38
MGSCv37996,096,694 - 96,224,065 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36996,005,700 - 96,128,333 (+)NCBIMGSCv36mm8
Celera995,752,654 - 95,877,737 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.31NCBI
Tfdp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555083,722,503 - 3,844,340 (+)Ensembl
ChiLan1.0NW_0049555083,722,412 - 3,844,340 (+)NCBIChiLan1.0ChiLan1.0
TFDP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,849,611 - 140,056,827 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13139,854,436 - 140,061,515 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03138,972,438 - 139,179,062 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13146,574,214 - 146,773,839 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3146,575,213 - 146,719,400 (-)EnsemblpanPan2panpan1.1
TFDP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12337,757,858 - 37,871,632 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2337,757,685 - 37,871,612 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2337,749,799 - 37,910,958 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02338,289,181 - 38,450,907 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2338,289,888 - 38,450,992 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12337,971,241 - 38,132,891 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02338,048,196 - 38,209,979 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02338,291,679 - 38,454,047 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tfdp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560276,914,010 - 77,081,051 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365403,658,774 - 3,820,894 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365403,659,082 - 3,784,794 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFDP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1382,752,458 - 82,937,668 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11382,752,446 - 82,937,790 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TFDP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11548,483,326 - 48,691,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1548,508,217 - 48,675,608 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604121,418,229 - 21,601,969 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tfdp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473018,563,987 - 18,763,227 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tfdp2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1887,629,477 - 87,763,412 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tfdp2
1129 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:287
Count of miRNA genes:183
Interacting mature miRNAs:225
Transcripts:ENSRNOT00000015015
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)863404444108404444Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
RH142076  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2896,895,335 - 96,895,770 (+)MAPPERmRatBN7.2
Rnor_6.08104,175,098 - 104,175,532NCBIRnor6.0
Rnor_5.08103,623,390 - 103,623,824UniSTSRnor5.0
RGSC_v3.48101,390,943 - 101,391,377UniSTSRGSC3.4
Celera896,338,809 - 96,339,243UniSTS
RH 3.4 Map81052.2UniSTS
Cytogenetic Map8q31UniSTS


Genetic Models
This gene Tfdp2 is modified in the following models/strains:
SS-Tfdp2em6Mcwi     SS-Tfdp2em5Mcwi     SS-Tfdp2em2Mcwi    


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 169 91 90 59 122 59 6 386 222 12 148 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000015015   ⟹   ENSRNOP00000015014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8105,706,478 - 105,776,363 (+)Ensembl
mRatBN7.2 Ensembl896,826,858 - 96,896,682 (+)Ensembl
Rnor_6.0 Ensembl8104,106,740 - 104,176,446 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081204   ⟹   ENSRNOP00000070243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8105,728,268 - 105,775,375 (+)Ensembl
mRatBN7.2 Ensembl896,760,504 - 96,895,823 (+)Ensembl
Rnor_6.0 Ensembl8104,040,934 - 104,175,882 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107228   ⟹   ENSRNOP00000079538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8105,684,376 - 105,776,363 (+)Ensembl
mRatBN7.2 Ensembl896,865,637 - 96,896,682 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108693   ⟹   ENSRNOP00000089626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8105,640,033 - 105,776,239 (+)Ensembl
mRatBN7.2 Ensembl896,760,544 - 96,895,792 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112993   ⟹   ENSRNOP00000085683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8105,706,977 - 105,776,239 (+)Ensembl
mRatBN7.2 Ensembl896,819,812 - 96,896,682 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000133684   ⟹   ENSRNOP00000105970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8105,707,493 - 105,781,001 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156907   ⟹   ENSRNOP00000110225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8105,640,033 - 105,781,001 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000159108   ⟹   ENSRNOP00000105570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8105,640,033 - 105,781,001 (+)Ensembl
RefSeq Acc Id: NM_001106847   ⟹   NP_001100317
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,706,533 - 105,776,244 (+)NCBI
mRatBN7.2896,826,969 - 96,896,684 (+)NCBI
Rnor_6.08104,106,740 - 104,176,446 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
RGSC_v3.48101,256,112 - 101,392,512 (+)RGD
Celera896,270,697 - 96,340,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243556   ⟹   XP_006243618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,640,041 - 105,781,026 (+)NCBI
mRatBN7.2896,760,460 - 96,901,466 (+)NCBI
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243561   ⟹   XP_006243623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,706,423 - 105,781,026 (+)NCBI
mRatBN7.2896,826,912 - 96,901,466 (+)NCBI
Rnor_6.08104,105,232 - 104,181,228 (+)NCBI
Rnor_5.08103,489,105 - 103,629,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595582   ⟹   XP_017451071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,640,066 - 105,781,026 (+)NCBI
mRatBN7.2896,760,460 - 96,901,466 (+)NCBI
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595583   ⟹   XP_017451072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,640,031 - 105,781,026 (+)NCBI
mRatBN7.2896,760,460 - 96,901,466 (+)NCBI
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595584   ⟹   XP_017451073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,640,018 - 105,781,026 (+)NCBI
mRatBN7.2896,760,460 - 96,901,466 (+)NCBI
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595585   ⟹   XP_017451074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,640,041 - 105,781,026 (+)NCBI
mRatBN7.2896,760,459 - 96,901,466 (+)NCBI
Rnor_6.08104,040,795 - 104,181,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081174   ⟹   XP_038937102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,672,119 - 105,781,026 (+)NCBI
mRatBN7.2896,792,943 - 96,901,466 (+)NCBI
RefSeq Acc Id: XM_039081176   ⟹   XP_038937104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,640,070 - 105,781,026 (+)NCBI
mRatBN7.2896,760,460 - 96,901,466 (+)NCBI
RefSeq Acc Id: XM_039081178   ⟹   XP_038937106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,640,070 - 105,781,026 (+)NCBI
mRatBN7.2896,760,460 - 96,901,466 (+)NCBI
RefSeq Acc Id: XM_039081179   ⟹   XP_038937107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,730,523 - 105,781,026 (+)NCBI
mRatBN7.2896,850,961 - 96,901,466 (+)NCBI
RefSeq Acc Id: XM_039081180   ⟹   XP_038937108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,699,581 - 105,781,026 (+)NCBI
mRatBN7.2896,820,015 - 96,901,466 (+)NCBI
RefSeq Acc Id: XM_039081183   ⟹   XP_038937111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,675,332 - 105,781,026 (+)NCBI
mRatBN7.2896,760,460 - 96,901,466 (+)NCBI
RefSeq Acc Id: XM_039081184   ⟹   XP_038937112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,717,669 - 105,781,026 (+)NCBI
mRatBN7.2896,838,109 - 96,901,466 (+)NCBI
RefSeq Acc Id: XM_039081185   ⟹   XP_038937113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,706,467 - 105,781,026 (+)NCBI
mRatBN7.2896,826,906 - 96,901,466 (+)NCBI
RefSeq Acc Id: XM_039081186   ⟹   XP_038937114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,706,464 - 105,781,026 (+)NCBI
mRatBN7.2896,826,902 - 96,901,466 (+)NCBI
RefSeq Acc Id: XM_039081187   ⟹   XP_038937115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,706,893 - 105,781,026 (+)NCBI
mRatBN7.2896,827,326 - 96,901,466 (+)NCBI
RefSeq Acc Id: XM_063265213   ⟹   XP_063121283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,640,052 - 105,781,026 (+)NCBI
RefSeq Acc Id: XM_063265215   ⟹   XP_063121285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,672,119 - 105,781,026 (+)NCBI
RefSeq Acc Id: XM_063265216   ⟹   XP_063121286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,640,041 - 105,781,026 (+)NCBI
RefSeq Acc Id: XM_063265217   ⟹   XP_063121287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,706,420 - 105,781,026 (+)NCBI
RefSeq Acc Id: XM_063265218   ⟹   XP_063121288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,706,423 - 105,781,026 (+)NCBI
RefSeq Acc Id: XM_063265219   ⟹   XP_063121289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,706,423 - 105,781,026 (+)NCBI
RefSeq Acc Id: XM_063265220   ⟹   XP_063121290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,675,332 - 105,781,026 (+)NCBI
RefSeq Acc Id: XM_063265221   ⟹   XP_063121291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,707,282 - 105,781,026 (+)NCBI
RefSeq Acc Id: XM_063265222   ⟹   XP_063121292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88105,675,332 - 105,781,026 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100317 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420224 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420225 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420226 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420227 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420228 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420229 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420230 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420231 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420232 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420233 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420234 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420235 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243618 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243623 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451071 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451072 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451073 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451074 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937102 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937104 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937106 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937107 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937108 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937111 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937112 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937113 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937114 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937115 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121283 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121285 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121286 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121287 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121288 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121289 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121290 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121291 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121292 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI68961 (Get FASTA)   NCBI Sequence Viewer  
  EDL77504 (Get FASTA)   NCBI Sequence Viewer  
  EDL77505 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015014
  ENSRNOP00000015014.7
  ENSRNOP00000070243.3
  ENSRNOP00000079538
  ENSRNOP00000079538.2
  ENSRNOP00000085683
  ENSRNOP00000085683.2
  ENSRNOP00000089626
  ENSRNOP00000089626.2
  ENSRNOP00000105570
  ENSRNOP00000105570.1
  ENSRNOP00000105970
  ENSRNOP00000105970.1
  ENSRNOP00000110225
  ENSRNOP00000110225.1
RefSeq Acc Id: NP_001100317   ⟸   NM_001106847
- UniProtKB: B5DF82 (UniProtKB/TrEMBL),   A0A8I5ZNQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243618   ⟸   XM_006243556
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006243623   ⟸   XM_006243561
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017451071   ⟸   XM_017595582
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXE8 (UniProtKB/TrEMBL),   A0A8I5ZNQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451072   ⟸   XM_017595583
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017451074   ⟸   XM_017595585
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451073   ⟸   XM_017595584
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000070243   ⟸   ENSRNOT00000081204
Ensembl Acc Id: ENSRNOP00000015014   ⟸   ENSRNOT00000015015
RefSeq Acc Id: XP_038937111   ⟸   XM_039081183
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937104   ⟸   XM_039081176
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A268 (UniProtKB/TrEMBL),   A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937106   ⟸   XM_039081178
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A268 (UniProtKB/TrEMBL),   A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937102   ⟸   XM_039081174
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXE8 (UniProtKB/TrEMBL),   A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937108   ⟸   XM_039081180
- Peptide Label: isoform X10
- UniProtKB: A0A8I6A8L4 (UniProtKB/TrEMBL),   A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937114   ⟸   XM_039081186
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937113   ⟸   XM_039081185
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937115   ⟸   XM_039081187
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937112   ⟸   XM_039081184
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937107   ⟸   XM_039081179
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A268 (UniProtKB/TrEMBL),   A0A8I5ZNQ2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085683   ⟸   ENSRNOT00000112993
Ensembl Acc Id: ENSRNOP00000079538   ⟸   ENSRNOT00000107228
Ensembl Acc Id: ENSRNOP00000089626   ⟸   ENSRNOT00000108693
RefSeq Acc Id: XP_063121286   ⟸   XM_063265216
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121283   ⟸   XM_063265213
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL),   A0A0G2JXE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121285   ⟸   XM_063265215
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121290   ⟸   XM_063265220
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL),   A0A8I6A268 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121292   ⟸   XM_063265222
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121287   ⟸   XM_063265217
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063121288   ⟸   XM_063265218
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121289   ⟸   XM_063265219
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121291   ⟸   XM_063265221
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZNQ2 (UniProtKB/TrEMBL),   A0A8I6A8L4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110225   ⟸   ENSRNOT00000156907
Ensembl Acc Id: ENSRNOP00000105570   ⟸   ENSRNOT00000159108
Ensembl Acc Id: ENSRNOP00000105970   ⟸   ENSRNOT00000133684
Protein Domains
E2F/DP family winged-helix DNA-binding   Transcription factor DP C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXE8-F1-model_v2 AlphaFold A0A0G2JXE8 1-430 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696190
Promoter ID:EPDNEW_R6715
Type:single initiation site
Name:Tfdp2_1
Description:transcription factor Dp-2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08104,106,659 - 104,106,719EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305814 AgrOrtholog
BioCyc Gene G2FUF-29466 BioCyc
Ensembl Genes ENSRNOG00000011241 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015015 ENTREZGENE
  ENSRNOT00000015015.8 UniProtKB/TrEMBL
  ENSRNOT00000081204.3 UniProtKB/TrEMBL
  ENSRNOT00000107228 ENTREZGENE
  ENSRNOT00000107228.2 UniProtKB/TrEMBL
  ENSRNOT00000108693 ENTREZGENE
  ENSRNOT00000108693.2 UniProtKB/TrEMBL
  ENSRNOT00000112993 ENTREZGENE
  ENSRNOT00000112993.2 UniProtKB/TrEMBL
  ENSRNOT00000133684 ENTREZGENE
  ENSRNOT00000133684.1 UniProtKB/TrEMBL
  ENSRNOT00000156907 ENTREZGENE
  ENSRNOT00000156907.1 UniProtKB/TrEMBL
  ENSRNOT00000159108 ENTREZGENE
  ENSRNOT00000159108.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  1.20.140.80 UniProtKB/TrEMBL
InterPro E2F-DP_heterodim UniProtKB/TrEMBL
  E2F_TDP UniProtKB/TrEMBL
  TF_DP_C_sf UniProtKB/TrEMBL
  Transc_factor_DP_C UniProtKB/TrEMBL
  Transcrpt_fac_DP UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:300947 UniProtKB/TrEMBL
NCBI Gene 300947 ENTREZGENE
PANTHER PTHR12548 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR DP-2 UniProtKB/TrEMBL
Pfam E2F_TDP UniProtKB/TrEMBL
  PF08781 UniProtKB/TrEMBL
PhenoGen Tfdp2 PhenoGen
PIRSF Transcription_factor_DP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011241 RatGTEx
SMART E2F_TDP UniProtKB/TrEMBL
  SM01138 UniProtKB/TrEMBL
Superfamily-SCOP SSF144074 UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
UniProt A0A0G2JXE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A268 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8L4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L6G7_RAT UniProtKB/TrEMBL
  A0ABK0LN42_RAT UniProtKB/TrEMBL
  A0ABK0LX68_RAT UniProtKB/TrEMBL
  B5DF82 ENTREZGENE, UniProtKB/TrEMBL
  F7EWM8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-24 Tfdp2  transcription factor Dp-2 (E2F dimerization partner 2)  Tfdp2  transcription factor Dp 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-16 Tfdp2  transcription factor Dp 2  Tfdp2  transcription factor Dp-2 (E2F dimerization partner 2)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Tfdp2  transcription factor Dp-2 (E2F dimerization partner 2)  Tcfdp2_predicted  transcription factor Dp 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Tcfdp2_predicted  transcription factor Dp 2 (predicted)  Tfdp2_predicted  transcription factor Dp-2 (E2F dimerization partner 2) (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Tfdp2_predicted  transcription factor Dp-2 (E2F dimerization partner 2) (predicted)      Symbol and Name status set to approved 70820 APPROVED