Smarcc1 (SWI/SNF related BAF chromatin remodeling complex subunit C1) - Rat Genome Database

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Gene: Smarcc1 (SWI/SNF related BAF chromatin remodeling complex subunit C1) Rattus norvegicus
Analyze
Symbol: Smarcc1
Name: SWI/SNF related BAF chromatin remodeling complex subunit C1 (Ensembl:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1)
RGD ID: 1304850
Description: Predicted to enable chromatin binding activity and histone binding activity. Involved in prostate gland development. Predicted to be located in XY body; cytoplasm; and male germ cell nucleus. Predicted to be part of SWI/SNF complex; nBAF complex; and npBAF complex. Human ortholog(s) of this gene implicated in hydrocephalus. Orthologous to human SMARCC1 (SWI/SNF related BAF chromatin remodeling complex subunit C1); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC301020; SWI/SNF complex subunit SMARCC1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,986,917 - 119,093,161 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8118,989,516 - 119,093,152 (+)EnsemblGRCr8
mRatBN7.28110,111,097 - 110,214,734 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,111,122 - 110,214,720 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8115,726,774 - 115,826,192 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,925,963 - 114,025,381 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,768,732 - 111,868,168 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08118,206,678 - 118,326,264 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8118,206,698 - 118,325,537 (+)Ensemblrn6Rnor6.0
Rnor_5.08117,561,593 - 117,677,011 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48114,484,491 - 114,609,850 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8109,398,958 - 109,497,187 (+)NCBICelera
RGSC_v3.18114,503,969 - 114,628,505 (+)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetazolamide  (ISO)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
caffeine  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
DDE  (ISO)
deguelin  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dimethyl sulfoxide  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folpet  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glyphosate  (ISO)
hydralazine  (ISO)
ketoconazole  (ISO)
Lasiocarpine  (ISO)
lead(0)  (ISO)
monocrotaline  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodimethylamine  (EXP)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
riddelliine  (ISO)
selenium atom  (ISO)
sodium fluoride  (ISO)
tamibarotene  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)
cytoplasm  (IEA,ISO)
nBAF complex  (IBA,IEA,ISO)
npBAF complex  (IBA,IEA,ISO)
nuclear lumen  (IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)
SWI/SNF complex  (IBA,IEA,ISO)
XY body  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. CircRNA SMARCC1 Sponges MiR-140-3p to Regulate Cell Progression in Colorectal Cancer. Chen MS, etal., Cancer Manag Res. 2020 Jun 23;12:4899-4910. doi: 10.2147/CMAR.S254185. eCollection 2020.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
5. Modulation of androgen receptor transactivation by the SWI3-related gene product (SRG3) in multiple ways. Hong CY, etal., Mol Cell Biol. 2005 Jun;25(12):4841-52.
6. MicroRNA-202-5p functions as a tumor suppressor in colorectal carcinoma by directly targeting SMARCC1. Ke SB, etal., Gene. 2018 Nov 15;676:329-335. doi: 10.1016/j.gene.2018.08.064. Epub 2018 Aug 23.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. The spectrum of SWI/SNF mutations, ubiquitous in human cancers. Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.
12. Solid-type poorly differentiated adenocarcinoma of the stomach: Deficiency of mismatch repair and SWI/SNF complex. Tsuruta S, etal., Cancer Sci. 2020 Mar;111(3):1008-1019. doi: 10.1111/cas.14301. Epub 2020 Jan 28.
13. SMARCC1 expression is positively correlated with pathological grade and good prognosis in renal cell carcinoma. Wang G, etal., Transl Androl Urol. 2021 Jan;10(1):236-242. doi: 10.21037/tau-20-935.
14. Enhanced SMARCD1, a subunit of the SWI/SNF complex, promotes liver cancer growth through the mTOR pathway. Zhou Y, etal., Clin Sci (Lond). 2020 Jun 26;134(12):1457-1472. doi: 10.1042/CS20200244.
Additional References at PubMed
PMID:8804307   PMID:8895581   PMID:10078207   PMID:11018012   PMID:11078522   PMID:11604513   PMID:11726552   PMID:12368262   PMID:12917342   PMID:16217013   PMID:16287714   PMID:16787967  
PMID:17074803   PMID:17640523   PMID:22285184   PMID:23643363   PMID:23785148   PMID:24335282   PMID:28753627   PMID:29374058   PMID:37946128  


Genomics

Comparative Map Data
Smarcc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,986,917 - 119,093,161 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8118,989,516 - 119,093,152 (+)EnsemblGRCr8
mRatBN7.28110,111,097 - 110,214,734 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,111,122 - 110,214,720 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8115,726,774 - 115,826,192 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,925,963 - 114,025,381 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,768,732 - 111,868,168 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08118,206,678 - 118,326,264 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8118,206,698 - 118,325,537 (+)Ensemblrn6Rnor6.0
Rnor_5.08117,561,593 - 117,677,011 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48114,484,491 - 114,609,850 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8109,398,958 - 109,497,187 (+)NCBICelera
RGSC_v3.18114,503,969 - 114,628,505 (+)NCBI
Cytogenetic Map8q32NCBI
SMARCC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38347,585,269 - 47,781,893 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl347,585,269 - 47,782,106 (-)Ensemblhg38GRCh38
GRCh37347,626,759 - 47,823,383 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36347,602,391 - 47,798,410 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34347,602,390 - 47,798,410NCBI
Celera347,569,167 - 47,765,120 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef347,673,262 - 47,870,748 (-)NCBIHuRef
CHM1_1347,577,371 - 47,773,509 (-)NCBICHM1_1
T2T-CHM13v2.0347,604,348 - 47,801,082 (-)NCBIT2T-CHM13v2.0
Smarcc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399109,961,129 - 110,069,773 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9109,946,776 - 110,069,246 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389110,132,024 - 110,240,178 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,117,708 - 110,240,178 (+)Ensemblmm10GRCm38
MGSCv379110,034,528 - 110,142,682 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369109,977,231 - 110,084,487 (+)NCBIMGSCv36mm8
Celera9109,860,346 - 109,968,637 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.87NCBI
Smarcc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542024,593,830 - 24,729,108 (+)Ensembl
ChiLan1.0NW_00495542024,594,057 - 24,729,108 (+)NCBIChiLan1.0ChiLan1.0
SMARCC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2247,544,150 - 47,739,357 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1347,548,917 - 47,744,126 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0347,487,948 - 47,683,623 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1348,587,903 - 48,781,325 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl348,590,221 - 48,781,248 (-)EnsemblpanPan2panpan1.1
SMARCC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12041,165,593 - 41,337,237 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2041,165,522 - 41,335,917 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2041,082,515 - 41,253,825 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02041,648,770 - 41,820,697 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2041,648,442 - 41,819,332 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12040,890,912 - 41,062,805 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02041,292,573 - 41,463,274 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02041,572,012 - 41,744,003 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Smarcc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118201,708,506 - 201,858,219 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365961,255,054 - 1,408,038 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365961,257,723 - 1,407,358 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1330,409,983 - 30,576,327 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11330,409,979 - 30,576,270 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SMARCC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,987,936 - 9,167,689 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl228,987,012 - 9,134,946 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041157,946,014 - 158,135,854 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarcc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473073,696,749 - 73,856,082 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473073,696,734 - 73,856,082 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Smarcc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v18100,732,149 - 100,833,651 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Smarcc1
506 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:49
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000064140
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
RH133628  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28110,210,227 - 110,210,414 (+)MAPPERmRatBN7.2
Rnor_6.08118,323,742 - 118,323,928NCBIRnor6.0
Rnor_5.08117,674,567 - 117,674,753UniSTSRnor5.0
RGSC_v3.48114,609,404 - 114,609,590UniSTSRGSC3.4
Celera8109,496,741 - 109,496,927UniSTS
RH 3.4 Map81191.9UniSTS
Cytogenetic Map8q32UniSTS
RH129646  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28110,209,661 - 110,209,845 (+)MAPPERmRatBN7.2
Rnor_6.08118,323,176 - 118,323,359NCBIRnor6.0
Rnor_5.08117,674,001 - 117,674,184UniSTSRnor5.0
RGSC_v3.48114,608,838 - 114,609,021UniSTSRGSC3.4
Celera8109,496,175 - 109,496,358UniSTS
Cytogenetic Map8q32UniSTS
AA957396  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera8109,492,930 - 109,493,166UniSTS
RH 3.4 Map81191.8UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000064140   ⟹   ENSRNOP00000060434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8110,111,122 - 110,210,674 (+)Ensembl
Rnor_6.0 Ensembl8118,206,703 - 118,324,188 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082607   ⟹   ENSRNOP00000074957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8118,989,516 - 119,090,415 (+)Ensembl
mRatBN7.2 Ensembl8110,111,158 - 110,211,995 (+)Ensembl
Rnor_6.0 Ensembl8118,206,698 - 118,325,537 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112135   ⟹   ENSRNOP00000079862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8110,113,998 - 110,214,720 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115679   ⟹   ENSRNOP00000094509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8118,989,516 - 119,093,152 (+)Ensembl
mRatBN7.2 Ensembl8110,111,155 - 110,214,720 (+)Ensembl
RefSeq Acc Id: NM_001413573   ⟹   NP_001400502
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,989,556 - 119,093,161 (+)NCBI
mRatBN7.28110,111,121 - 110,214,734 (+)NCBI
RefSeq Acc Id: XM_006243771   ⟹   XP_006243833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,986,917 - 119,090,424 (+)NCBI
mRatBN7.28110,111,097 - 110,211,995 (+)NCBI
Rnor_6.08118,206,679 - 118,325,509 (+)NCBI
Rnor_5.08117,561,593 - 117,677,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243772   ⟹   XP_006243834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,986,917 - 119,090,269 (+)NCBI
mRatBN7.28110,111,097 - 110,211,834 (+)NCBI
Rnor_6.08118,206,679 - 118,325,509 (+)NCBI
Rnor_5.08117,561,593 - 117,677,011 (+)NCBI
Sequence:
RefSeq Acc Id: XP_006243833   ⟸   XM_006243771
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9D6 (UniProtKB/TrEMBL),   A6I3D6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243834   ⟸   XM_006243772
- Peptide Label: isoform X2
- UniProtKB: A6I3D6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074957   ⟸   ENSRNOT00000082607
Ensembl Acc Id: ENSRNOP00000060434   ⟸   ENSRNOT00000064140
Ensembl Acc Id: ENSRNOP00000094509   ⟸   ENSRNOT00000115679
Ensembl Acc Id: ENSRNOP00000079862   ⟸   ENSRNOT00000112135
RefSeq Acc Id: NP_001400502   ⟸   NM_001413573
- UniProtKB: A6I3D6 (UniProtKB/TrEMBL),   A0A8I6AMA8 (UniProtKB/TrEMBL),   A6I3D4 (UniProtKB/TrEMBL)
Protein Domains
Chromo   Myb-like   SANT   SWIRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K9D6-F1-model_v2 AlphaFold A0A0G2K9D6 1-1083 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696326
Promoter ID:EPDNEW_R6850
Type:initiation region
Name:Smarcc1_1
Description:SWI/SNF related, matrix associated, actin dependent regulatorof chromatin, subfamily c, member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08118,206,697 - 118,206,757EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304850 AgrOrtholog
BioCyc Gene G2FUF-29079 BioCyc
Ensembl Genes ENSRNOG00000020804 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082607 ENTREZGENE
  ENSRNOT00000082607.3 UniProtKB/TrEMBL
  ENSRNOT00000115679 ENTREZGENE
  ENSRNOT00000115679.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro BRCT_dom_sf UniProtKB/TrEMBL
  Chromodomain UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  MARR_BRCT_CHROMO UniProtKB/TrEMBL
  SANT_DNA-bd UniProtKB/TrEMBL
  SANT_eukarya UniProtKB/TrEMBL
  SMARCC_C UniProtKB/TrEMBL
  SMARCC_N UniProtKB/TrEMBL
  SWIRM UniProtKB/TrEMBL
  SWIRM-assoc UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene 301020 ENTREZGENE
PANTHER CHONDROITIN SULFATE PROTEOGLYCAN 5 UniProtKB/TrEMBL
  CHONDROITIN SULFATE PROTEOGLYCAN 5 -RELATED UniProtKB/TrEMBL
Pfam Myb_DNA-binding UniProtKB/TrEMBL
  SWIRM UniProtKB/TrEMBL
  SWIRM-assoc_1 UniProtKB/TrEMBL
  SWIRM-assoc_2 UniProtKB/TrEMBL
  SWIRM-assoc_3 UniProtKB/TrEMBL
PhenoGen Smarcc1 PhenoGen
PROSITE MARR_BRCT_CHROMO UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
  SWIRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020804 RatGTEx
SMART CHROMO UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
Superfamily-SCOP BRCT UniProtKB/TrEMBL
  Homeodomain_like UniProtKB/TrEMBL
UniProt A0A0G2K9D6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMA8 ENTREZGENE, UniProtKB/TrEMBL
  A6I3D4 ENTREZGENE, UniProtKB/TrEMBL
  A6I3D6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-08 Smarcc1  SWI/SNF related BAF chromatin remodeling complex subunit C1  Smarcc1  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Smarcc1  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1   Smarcc1_predicted  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (predicted)  'predicted' is removed 2292626 APPROVED
2008-01-09 Smarcc1_predicted  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (predicted)  LOC686453  similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155) (SWI3-related protein)  Data merged from RGD:1597631 1643240 APPROVED
2006-11-20 LOC686453  similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155) (SWI3-related protein)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Smarcc1_predicted  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED