Smarcc1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1) - Rat Genome Database

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Gene: Smarcc1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1) Mus musculus
Analyze
Symbol: Smarcc1
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
RGD ID: 1312525
MGI Page MGI
Description: Enables chromatin binding activity. Acts upstream of or within several processes, including insulin receptor signaling pathway; negative regulation of proteasomal ubiquitin-dependent protein catabolic process; and positive regulation of transcription by RNA polymerase II. Located in XY body and male germ cell nucleus. Part of SWI/SNF complex; nBAF complex; and npBAF complex. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; hemolymphoid system gland; and sensory organ. Human ortholog(s) of this gene implicated in hydrocephalus. Orthologous to human SMARCC1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI115498; BAF15; BAF155; BRG1-associated factor 155; ms; msp3; Rsc8; SR; SRG3; SWI/SNF complex 155 kDa subunit; SWI/SNF complex subunit SMARCC1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1; SWI3-related protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm7004  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399109,961,129 - 110,069,773 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9109,946,776 - 110,069,246 (+)EnsemblGRCm39 Ensembl
GRCm389110,132,024 - 110,240,178 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,117,708 - 110,240,178 (+)EnsemblGRCm38mm10GRCm38
MGSCv379110,034,528 - 110,142,682 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369109,977,231 - 110,084,487 (+)NCBIMGSCv36mm8
Celera9109,860,346 - 109,968,637 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.87NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
brahma complex  (NAS)
chromatin  (NAS)
cytoplasm  (ISO)
GBAF complex  (NAS)
kinetochore  (NAS)
male germ cell nucleus  (IDA)
nBAF complex  (IBA,IDA,NAS)
npBAF complex  (IBA,IDA,NAS)
nuclear matrix  (NAS)
nucleoplasm  (ISO)
nucleus  (IDA,ISO)
RSC-type complex  (NAS)
SWI/SNF complex  (IBA,IDA,ISO,NAS,TAS)
XY body  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. CircRNA SMARCC1 Sponges MiR-140-3p to Regulate Cell Progression in Colorectal Cancer. Chen MS, etal., Cancer Manag Res. 2020 Jun 23;12:4899-4910. doi: 10.2147/CMAR.S254185. eCollection 2020.
2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
3. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
4. MicroRNA-202-5p functions as a tumor suppressor in colorectal carcinoma by directly targeting SMARCC1. Ke SB, etal., Gene. 2018 Nov 15;676:329-335. doi: 10.1016/j.gene.2018.08.064. Epub 2018 Aug 23.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Altered control of cellular proliferation in the absence of mammalian brahma (SNF2alpha). Reyes JC, etal., EMBO J 1998 Dec 1;17(23):6979-91.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. The spectrum of SWI/SNF mutations, ubiquitous in human cancers. Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.
13. Solid-type poorly differentiated adenocarcinoma of the stomach: Deficiency of mismatch repair and SWI/SNF complex. Tsuruta S, etal., Cancer Sci. 2020 Mar;111(3):1008-1019. doi: 10.1111/cas.14301. Epub 2020 Jan 28.
14. SMARCC1 expression is positively correlated with pathological grade and good prognosis in renal cell carcinoma. Wang G, etal., Transl Androl Urol. 2021 Jan;10(1):236-242. doi: 10.21037/tau-20-935.
15. Enhanced SMARCD1, a subunit of the SWI/SNF complex, promotes liver cancer growth through the mTOR pathway. Zhou Y, etal., Clin Sci (Lond). 2020 Jun 26;134(12):1457-1472. doi: 10.1042/CS20200244.
Additional References at PubMed
PMID:8804307   PMID:9128241   PMID:9151708   PMID:10078207   PMID:10204490   PMID:10349636   PMID:10778858   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11078522   PMID:11175787  
PMID:11217851   PMID:11263494   PMID:11504912   PMID:11544199   PMID:11604513   PMID:11790558   PMID:12110891   PMID:12192000   PMID:12215535   PMID:12368262   PMID:12477932   PMID:12520002  
PMID:12904583   PMID:14610273   PMID:15016814   PMID:15016815   PMID:15187086   PMID:15489334   PMID:15525990   PMID:15741177   PMID:15782199   PMID:15923603   PMID:15985610   PMID:16141072  
PMID:16141073   PMID:16287714   PMID:16288722   PMID:16787967   PMID:16932743   PMID:17074803   PMID:17093407   PMID:17255092   PMID:17255939   PMID:17340523   PMID:17526739   PMID:17640523  
PMID:17920018   PMID:18206867   PMID:18287559   PMID:18773073   PMID:18799693   PMID:18809673   PMID:19279218   PMID:19279220   PMID:19379700   PMID:19741146   PMID:19785031   PMID:19910461  
PMID:20362541   PMID:20362542   PMID:20412781   PMID:20935679   PMID:21095589   PMID:21525287   PMID:21677750   PMID:21873635   PMID:22083510   PMID:22245845   PMID:22285184   PMID:22325351  
PMID:22427636   PMID:22513373   PMID:22770845   PMID:22922362   PMID:22988430   PMID:23540691   PMID:23643363   PMID:23698369   PMID:23785148   PMID:23933087   PMID:23937658   PMID:23974113  
PMID:24025402   PMID:24170322   PMID:24335282   PMID:24365151   PMID:24421395   PMID:24434208   PMID:25066234   PMID:25646472   PMID:26147219   PMID:26365490   PMID:26496610   PMID:26655900  
PMID:26952987   PMID:26959361   PMID:26986003   PMID:27480037   PMID:27611684   PMID:28369036   PMID:28378742   PMID:28671696   PMID:28737171   PMID:29374058   PMID:29983323   PMID:30196744  
PMID:30240734   PMID:30510198   PMID:30550785   PMID:31020615   PMID:31077711   PMID:31162944   PMID:31971251   PMID:32434140   PMID:32504627   PMID:32640256   PMID:32848249   PMID:33207205  
PMID:33602870   PMID:33723076   PMID:33750945   PMID:33809795   PMID:34161765   PMID:34220450   PMID:34336815   PMID:34524839   PMID:34716243   PMID:35020876   PMID:35173232   PMID:36263009  
PMID:36335117   PMID:36800290   PMID:37478146   PMID:37522516   PMID:37805104   PMID:38266080  


Genomics

Comparative Map Data
Smarcc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399109,961,129 - 110,069,773 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9109,946,776 - 110,069,246 (+)EnsemblGRCm39 Ensembl
GRCm389110,132,024 - 110,240,178 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,117,708 - 110,240,178 (+)EnsemblGRCm38mm10GRCm38
MGSCv379110,034,528 - 110,142,682 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369109,977,231 - 110,084,487 (+)NCBIMGSCv36mm8
Celera9109,860,346 - 109,968,637 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.87NCBI
SMARCC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38347,585,269 - 47,781,893 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl347,585,269 - 47,782,106 (-)EnsemblGRCh38hg38GRCh38
GRCh37347,626,759 - 47,823,383 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36347,602,391 - 47,798,410 (-)NCBINCBI36Build 36hg18NCBI36
Build 34347,602,390 - 47,798,410NCBI
Celera347,569,167 - 47,765,120 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef347,673,262 - 47,870,748 (-)NCBIHuRef
CHM1_1347,577,371 - 47,773,509 (-)NCBICHM1_1
T2T-CHM13v2.0347,604,348 - 47,801,082 (-)NCBIT2T-CHM13v2.0
Smarcc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,986,917 - 119,093,161 (+)NCBIGRCr8
mRatBN7.28110,111,097 - 110,214,734 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,111,122 - 110,214,720 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8115,726,774 - 115,826,192 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,925,963 - 114,025,381 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,768,732 - 111,868,168 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08118,206,678 - 118,326,264 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8118,206,698 - 118,325,537 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08117,561,593 - 117,677,011 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48114,484,491 - 114,609,850 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18114,503,969 - 114,628,505 (+)NCBI
Celera8109,398,958 - 109,497,187 (+)NCBICelera
Cytogenetic Map8q32NCBI
Smarcc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542024,593,830 - 24,729,108 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542024,594,057 - 24,729,108 (+)NCBIChiLan1.0ChiLan1.0
SMARCC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2247,544,150 - 47,739,357 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1347,548,917 - 47,744,126 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0347,487,948 - 47,683,623 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1348,587,903 - 48,781,325 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl348,590,221 - 48,781,248 (-)Ensemblpanpan1.1panPan2
SMARCC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12041,165,593 - 41,337,237 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2041,165,522 - 41,335,917 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2041,082,515 - 41,253,825 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02041,648,770 - 41,820,697 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2041,648,442 - 41,819,332 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12040,890,912 - 41,062,805 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02041,292,573 - 41,463,274 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02041,572,012 - 41,744,003 (+)NCBIUU_Cfam_GSD_1.0
Smarcc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118201,708,506 - 201,858,219 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365961,255,054 - 1,408,038 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365961,257,723 - 1,407,358 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1330,409,983 - 30,601,441 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11330,409,979 - 30,576,270 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SMARCC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,987,936 - 9,167,689 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl228,987,012 - 9,134,946 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041157,946,014 - 158,135,854 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarcc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473073,696,749 - 73,856,082 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473073,696,734 - 73,856,082 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Smarcc1
3241 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1752
Count of miRNA genes:609
Interacting mature miRNAs:718
Transcripts:ENSMUST00000035057, ENSMUST00000088716, ENSMUST00000111966, ENSMUST00000111968, ENSMUST00000111969
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse
13515058Adip20d_madiposity 20d (mouse)9108744078118744078Mouse

Markers in Region
RH135873  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,238,368 - 110,238,537UniSTSGRCm38
MGSCv379110,140,872 - 110,141,041UniSTSGRCm37
Celera9109,966,831 - 109,967,000UniSTS
Cytogenetic Map9F2UniSTS
UniSTS:236257  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,182,471 - 110,182,785UniSTSGRCm38
MGSCv379110,084,975 - 110,085,289UniSTSGRCm37
Celera9109,910,937 - 109,911,251UniSTS
Cytogenetic Map9F2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001413569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02060691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI447890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ163551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U85614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000088716   ⟹   ENSMUSP00000086094
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,961,048 - 110,069,246 (+)Ensembl
GRCm38.p6 Ensembl9110,131,980 - 110,240,178 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098355   ⟹   ENSMUSP00000095958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,946,776 - 109,976,126 (+)Ensembl
GRCm38.p6 Ensembl9110,117,708 - 110,147,058 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197480   ⟹   ENSMUSP00000142629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,961,105 - 110,013,371 (+)Ensembl
GRCm38.p6 Ensembl9110,132,037 - 110,184,303 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197984   ⟹   ENSMUSP00000142611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,961,105 - 110,064,359 (+)Ensembl
GRCm38.p6 Ensembl9110,132,037 - 110,235,291 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198211   ⟹   ENSMUSP00000143199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,063,976 - 110,066,468 (+)Ensembl
GRCm38.p6 Ensembl9110,234,908 - 110,237,400 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198667
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,014,800 - 110,035,221 (+)Ensembl
GRCm38.p6 Ensembl9110,185,732 - 110,206,153 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199896   ⟹   ENSMUSP00000143550
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,961,105 - 110,069,246 (+)Ensembl
GRCm38.p6 Ensembl9110,132,037 - 110,240,178 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9109,961,105 - 110,042,931 (+)Ensembl
GRCm38.p6 Ensembl9110,132,037 - 110,213,863 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200426
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,065,462 - 110,066,459 (+)Ensembl
GRCm38.p6 Ensembl9110,236,394 - 110,237,391 (+)Ensembl
RefSeq Acc Id: NM_001413569   ⟹   NP_001400498
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,961,129 - 110,069,773 (+)NCBI
RefSeq Acc Id: NM_001413570   ⟹   NP_001400499
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,961,129 - 110,069,773 (+)NCBI
RefSeq Acc Id: NM_001413571   ⟹   NP_001400500
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,961,129 - 110,069,773 (+)NCBI
RefSeq Acc Id: NM_001413572   ⟹   NP_001400501
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,961,129 - 110,069,773 (+)NCBI
RefSeq Acc Id: NM_009211   ⟹   NP_033237
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399109,961,129 - 110,069,773 (+)NCBI
GRCm389110,132,024 - 110,240,178 (+)ENTREZGENE
MGSCv379110,034,528 - 110,142,682 (+)RGD
Celera9109,860,346 - 109,968,637 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033237   ⟸   NM_009211
- UniProtKB: Q7TS80 (UniProtKB/Swiss-Prot),   Q7TT29 (UniProtKB/Swiss-Prot),   P97496 (UniProtKB/Swiss-Prot),   Q3UPK0 (UniProtKB/TrEMBL),   Q3UMX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000143199   ⟸   ENSMUST00000198211
RefSeq Acc Id: ENSMUSP00000142629   ⟸   ENSMUST00000197480
RefSeq Acc Id: ENSMUSP00000142611   ⟸   ENSMUST00000197984
RefSeq Acc Id: ENSMUSP00000086094   ⟸   ENSMUST00000088716
RefSeq Acc Id: ENSMUSP00000143550   ⟸   ENSMUST00000199896
RefSeq Acc Id: ENSMUSP00000095958   ⟸   ENSMUST00000098355
RefSeq Acc Id: NP_001400498   ⟸   NM_001413569
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001400501   ⟸   NM_001413572
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001400499   ⟸   NM_001413570
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001400500   ⟸   NM_001413571
- Peptide Label: isoform 4
Protein Domains
BRCT   Chromo   MarR-like   Myb-like   SANT   SWIRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97496-F1-model_v2 AlphaFold P97496 1-1104 view protein structure

Promoters
RGD ID:6845184
Promoter ID:MM_KWN:58899
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000035057,   ENSMUST00000111971,   NM_009211,   UC009RTM.1,   UC009RTN.1,   UC009RTO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369110,033,836 - 110,034,667 (+)MPROMDB
RGD ID:8670986
Promoter ID:EPDNEW_M13524
Type:initiation region
Name:Smarcc1_1
Description:Mus musculus SWI/SNF related, matrix associated, actin dependentregulator of chromatin, subfamily c, member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389110,132,061 - 110,132,121EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1203524 AgrOrtholog
Ensembl Genes ENSMUSG00000032481 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000088716 ENTREZGENE
  ENSMUST00000088716.12 UniProtKB/Swiss-Prot
  ENSMUST00000098355.6 UniProtKB/TrEMBL
  ENSMUST00000197480.5 UniProtKB/TrEMBL
  ENSMUST00000197984.5 UniProtKB/Swiss-Prot
  ENSMUST00000198211.2 UniProtKB/TrEMBL
  ENSMUST00000199896.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BRCT_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT/Myb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMARCC_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMARCC_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWIRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWIRM-assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20588 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1203524 ENTREZGENE
NCBI Gene 20588 ENTREZGENE
PANTHER PTHR12802:SF9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWI/SNF COMPLEX-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Myb_DNA-binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWIRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWIRM-assoc_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWIRM-assoc_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWIRM-assoc_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Smarcc1 PhenoGen
PROSITE MARR_BRCT_CHROMO UniProtKB/Swiss-Prot
  MYB_LIKE UniProtKB/TrEMBL
  SANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWIRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CHROMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JFJ8_MOUSE UniProtKB/TrEMBL
  F6SKR9_MOUSE UniProtKB/TrEMBL
  P97496 ENTREZGENE
  Q3UMX0 ENTREZGENE, UniProtKB/TrEMBL
  Q3UNN4_MOUSE UniProtKB/TrEMBL
  Q3UPK0 ENTREZGENE, UniProtKB/TrEMBL
  Q3UZD0_MOUSE UniProtKB/TrEMBL
  Q7TS80 ENTREZGENE
  Q7TT29 ENTREZGENE
  SMRC1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q7TS80 UniProtKB/Swiss-Prot
  Q7TT29 UniProtKB/Swiss-Prot