Efna5 (ephrin A5) - Rat Genome Database

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Gene: Efna5 (ephrin A5) Rattus norvegicus
Analyze
Symbol: Efna5
Name: ephrin A5
RGD ID: 620391
Description: Enables ephrin receptor binding activity. Predicted to be involved in several processes, including axonogenesis; positive regulation of nervous system development; and regulation of cytoskeleton organization. Predicted to act upstream of or within several processes, including cellular response to follicle-stimulating hormone stimulus; cellular response to forskolin; and negative regulation of substrate adhesion-dependent cell spreading. Predicted to be located in adherens junction and basement membrane. Predicted to be active in GABA-ergic synapse and external side of plasma membrane. Orthologous to human EFNA5 (ephrin A5); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AL-1; eph-related receptor tyrosine kinase ligand 7; ephrin-A5; LERK-7; Lerk7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89109,763,786 - 110,042,396 (-)NCBIGRCr8
mRatBN7.29102,316,753 - 102,595,480 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9102,320,295 - 102,597,413 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9110,731,253 - 111,005,043 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09115,846,837 - 116,120,820 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09114,197,132 - 114,470,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09110,054,002 - 110,329,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9110,057,155 - 110,225,486 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09109,624,143 - 109,898,215 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49101,227,615 - 101,532,696 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19101,437,094 - 101,742,176 (-)NCBI
Celera999,743,743 - 100,016,279 (-)NCBICelera
Cytogenetic Map9q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (ISO)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
cocaine  (EXP)
Cuprizon  (EXP)
decabromodiphenyl ether  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furosemide  (EXP)
gentamycin  (EXP)
glyphosate  (EXP)
indole-3-methanol  (EXP)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
melphalan  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
nickel sulfate  (ISO)
ozone  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
PD 0325901  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
rimonabant  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Ephrin-A5 and EphA5 interaction induces synaptogenesis during early hippocampal development. Akaneya Y, etal., PLoS One. 2010 Aug 31;5(8):e12486. doi: 10.1371/journal.pone.0012486.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Cloning of AL-1, a ligand for an Eph-related tyrosine kinase receptor involved in axon bundle formation. Winslow JW, etal., Neuron 1995 May;14(5):973-81.
Additional References at PubMed
PMID:9053851   PMID:9614241   PMID:11089974   PMID:11222144   PMID:11870224   PMID:15777695   PMID:15996548   PMID:16510508   PMID:17328773   PMID:17448994   PMID:19036963   PMID:22275477  
PMID:23242526   PMID:23274893   PMID:24222347   PMID:29237529   PMID:29762250   PMID:32396496  


Genomics

Comparative Map Data
Efna5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89109,763,786 - 110,042,396 (-)NCBIGRCr8
mRatBN7.29102,316,753 - 102,595,480 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9102,320,295 - 102,597,413 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9110,731,253 - 111,005,043 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09115,846,837 - 116,120,820 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09114,197,132 - 114,470,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09110,054,002 - 110,329,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9110,057,155 - 110,225,486 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09109,624,143 - 109,898,215 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49101,227,615 - 101,532,696 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19101,437,094 - 101,742,176 (-)NCBI
Celera999,743,743 - 100,016,279 (-)NCBICelera
Cytogenetic Map9q37NCBI
EFNA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385107,376,894 - 107,670,937 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5107,376,894 - 107,670,937 (-)EnsemblGRCh38hg38GRCh38
GRCh375106,712,595 - 107,006,638 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365106,744,250 - 107,034,495 (-)NCBINCBI36Build 36hg18NCBI36
Build 345106,744,249 - 107,034,495NCBI
Celera5102,652,515 - 102,946,033 (-)NCBICelera
Cytogenetic Map5q21.3NCBI
HuRef5101,885,499 - 102,179,416 (-)NCBIHuRef
CHM1_15106,145,383 - 106,439,350 (-)NCBICHM1_1
T2T-CHM13v2.05107,879,857 - 108,173,778 (-)NCBIT2T-CHM13v2.0
Efna5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391762,909,949 - 63,188,431 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1762,911,179 - 63,188,312 (-)EnsemblGRCm39 Ensembl
GRCm381762,602,957 - 62,881,317 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1762,604,184 - 62,881,317 (-)EnsemblGRCm38mm10GRCm38
MGSCv371762,952,306 - 63,230,666 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361762,290,210 - 62,566,779 (-)NCBIMGSCv36mm8
Celera1766,941,186 - 67,218,870 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1732.57NCBI
Efna5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554186,920,919 - 7,185,478 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554186,919,270 - 7,188,561 (+)NCBIChiLan1.0ChiLan1.0
EFNA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24102,656,917 - 102,958,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15100,810,566 - 101,112,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05102,732,268 - 103,026,746 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15108,548,927 - 108,842,729 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5108,548,927 - 108,598,942 (-)Ensemblpanpan1.1panPan2
EFNA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.134,272,138 - 4,546,527 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl34,272,518 - 4,542,049 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha35,666,868 - 5,947,210 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.034,163,164 - 4,443,229 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl34,169,390 - 4,439,740 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.134,102,672 - 4,382,928 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.034,131,173 - 4,411,046 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.034,274,587 - 4,554,692 (+)NCBIUU_Cfam_GSD_1.0
Efna5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213159,344,414 - 159,394,038 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365312,217,368 - 2,300,794 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365312,217,467 - 2,267,265 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFNA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2112,534,949 - 112,815,827 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12112,533,124 - 112,821,293 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22117,052,889 - 117,095,595 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFNA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12310,823,243 - 11,115,175 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2310,823,261 - 10,873,666 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660363,139,584 - 3,432,471 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efna5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474325,341,132 - 25,611,564 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474325,336,851 - 25,611,698 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Efna5
1631 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:80
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000045096
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat

Markers in Region
D9Got218  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29102,402,586 - 102,402,860 (+)MAPPERmRatBN7.2
Rnor_6.09110,137,737 - 110,138,010NCBIRnor6.0
Rnor_5.09109,706,023 - 109,706,296UniSTSRnor5.0
RGSC_v3.49101,330,236 - 101,330,509UniSTSRGSC3.4
Celera999,824,712 - 99,824,985UniSTS
Cytogenetic Map9q37UniSTS
RH141288  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29102,572,174 - 102,572,370 (+)MAPPERmRatBN7.2
Rnor_6.09110,306,729 - 110,306,924NCBIRnor6.0
Rnor_5.09109,874,892 - 109,875,087UniSTSRnor5.0
RGSC_v3.49101,509,739 - 101,509,934UniSTSRGSC3.4
Celera999,993,388 - 99,993,583UniSTS
Cytogenetic Map9q37UniSTS
EFNA5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29102,321,143 - 102,321,341 (+)MAPPERmRatBN7.2
Rnor_6.09110,057,076 - 110,057,273NCBIRnor6.0
Rnor_5.09109,627,376 - 109,627,573UniSTSRnor5.0
RGSC_v3.49101,227,582 - 101,227,779UniSTSRGSC3.4
Celera999,743,710 - 99,743,907UniSTS
Cytogenetic Map9q37UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 12 11 11 11 62 27 29 4
Low 3 21 37 22 13 22 1 1 12 8 11 7 1
Below cutoff 7 9 8 5 8 4 5 1 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000045096   ⟹   ENSRNOP00000039406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9102,321,177 - 102,367,963 (-)Ensembl
Rnor_6.0 Ensembl9110,057,155 - 110,225,486 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096180   ⟹   ENSRNOP00000096410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9102,320,295 - 102,597,413 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096857   ⟹   ENSRNOP00000086477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9102,321,177 - 102,597,413 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116684   ⟹   ENSRNOP00000092647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9102,321,177 - 102,520,068 (-)Ensembl
RefSeq Acc Id: NM_053903   ⟹   NP_446355
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89109,768,210 - 110,042,187 (-)NCBI
mRatBN7.29102,321,177 - 102,595,134 (-)NCBI
Rnor_6.09110,057,109 - 110,329,687 (-)NCBI
Rnor_5.09109,624,143 - 109,898,215 (-)NCBI
RGSC_v3.49101,227,615 - 101,532,696 (-)RGD
Celera999,743,743 - 100,016,279 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245593   ⟹   XP_006245655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89109,763,786 - 110,042,396 (-)NCBI
mRatBN7.29102,316,753 - 102,595,480 (-)NCBI
Rnor_6.09110,054,002 - 110,329,878 (-)NCBI
Rnor_5.09109,624,143 - 109,898,215 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063266541   ⟹   XP_063122611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89109,763,786 - 110,041,777 (-)NCBI
RefSeq Acc Id: XM_063266542   ⟹   XP_063122612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89109,763,786 - 110,041,777 (-)NCBI
RefSeq Acc Id: XM_063266543   ⟹   XP_063122613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89109,763,786 - 109,822,823 (-)NCBI
RefSeq Acc Id: XM_063266544   ⟹   XP_063122614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89109,763,786 - 110,041,964 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_446355   ⟸   NM_053903
- Peptide Label: precursor
- UniProtKB: P97605 (UniProtKB/Swiss-Prot),   A0A8I6AFY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245655   ⟸   XM_006245593
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GLK9 (UniProtKB/TrEMBL),   A6JR96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000039406   ⟸   ENSRNOT00000045096
RefSeq Acc Id: ENSRNOP00000086477   ⟸   ENSRNOT00000096857
RefSeq Acc Id: ENSRNOP00000092647   ⟸   ENSRNOT00000116684
RefSeq Acc Id: ENSRNOP00000096410   ⟸   ENSRNOT00000096180
RefSeq Acc Id: XP_063122614   ⟸   XM_063266544
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063122612   ⟸   XM_063266542
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063122611   ⟸   XM_063266541
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063122613   ⟸   XM_063266543
- Peptide Label: isoform X4
Protein Domains
Ephrin RBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97605-F1-model_v2 AlphaFold P97605 1-228 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620391 AgrOrtholog
BioCyc Gene G2FUF-26540 BioCyc
Ensembl Genes ENSRNOG00000034177 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045096.3 UniProtKB/TrEMBL
  ENSRNOT00000096180.1 UniProtKB/TrEMBL
  ENSRNOT00000096857 ENTREZGENE
  ENSRNOT00000096857.1 UniProtKB/TrEMBL
  ENSRNOT00000116684.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.420 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cupredoxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin-A_Ecto UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin_RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:116683 UniProtKB/Swiss-Prot
NCBI Gene 116683 ENTREZGENE
PANTHER EPHRIN-A5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11304 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ephrin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Efna5 PhenoGen
PRINTS EPHRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EPHRIN_RBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EPHRIN_RBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000034177 RatGTEx
Superfamily-SCOP SSF49503 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A627_RAT UniProtKB/TrEMBL
  A0A8I6AFY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GLK9 ENTREZGENE, UniProtKB/TrEMBL
  A6JR96 ENTREZGENE, UniProtKB/TrEMBL
  A6JR97_RAT UniProtKB/TrEMBL
  EFNA5_RAT UniProtKB/Swiss-Prot
  G3V989_RAT UniProtKB/TrEMBL
  P97605 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Efna5  ephrin A5    eph-related receptor tyrosine kinase ligand 7  Name updated 1299863 APPROVED
2002-08-07 Efna5  eph-related receptor tyrosine kinase ligand 7      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression mRNA expressed exclusively in nervous system, predominantly in hippocampus and cortex 728210
gene_process may be important for neuronal pathfinding 728210
gene_product member of the ephrin gene family, an emerging ligand family for the Eph receptor tyrosine kinases 728210