Olr1096 (olfactory receptor 1096) - Rat Genome Database

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Gene: Olr1096 (olfactory receptor 1096) Rattus norvegicus
Analyze
Symbol: Olr1096
Name: olfactory receptor 1096
RGD ID: 1334055
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be active in plasma membrane. Orthologous to human OR2Z1 (olfactory receptor family 2 subfamily Z member 1); INTERACTS WITH acrylamide; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor gene Olr1096; olfactory receptor Olr1096
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,509,409 - 15,510,359 (-)NCBIGRCr8
mRatBN7.2714,774,197 - 14,775,147 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx717,821,606 - 17,822,556 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,676,142 - 19,677,092 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0717,566,077 - 17,567,027 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.041,841,447 - 1,843,062 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl41,841,955 - 1,843,031 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.041,901,035 - 1,902,111 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4716,550,153 - 16,551,103 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1716,550,152 - 16,551,103 (-)NCBI
Celera713,692,993 - 13,693,943 (-)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Olr1096
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,509,409 - 15,510,359 (-)NCBIGRCr8
mRatBN7.2714,774,197 - 14,775,147 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx717,821,606 - 17,822,556 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,676,142 - 19,677,092 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0717,566,077 - 17,567,027 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.041,841,447 - 1,843,062 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl41,841,955 - 1,843,031 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.041,901,035 - 1,902,111 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4716,550,153 - 16,551,103 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1716,550,152 - 16,551,103 (-)NCBI
Celera713,692,993 - 13,693,943 (-)NCBICelera
Cytogenetic Map7q13NCBI
OR2Z1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,721,634 - 8,732,160 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl198,721,634 - 8,732,160 (+)EnsemblGRCh38hg38GRCh38
GRCh37198,831,998 - 8,842,522 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36198,702,391 - 8,703,335 (+)NCBINCBI36Build 36hg18NCBI36
Build 34198,702,390 - 8,703,335NCBI
Celera198,660,485 - 8,661,429 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,457,891 - 8,458,835 (+)NCBIHuRef
CHM1_1198,841,039 - 8,841,983 (+)NCBICHM1_1
T2T-CHM13v2.0198,717,287 - 8,727,813 (+)NCBIT2T-CHM13v2.0
Or2z9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,853,606 - 72,854,550 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,837,021 - 72,856,928 (+)EnsemblGRCm39 Ensembl
GRCm38872,099,762 - 72,100,706 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,083,177 - 72,103,084 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,623,661 - 74,624,605 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,028,751 - 75,029,836 (+)NCBIMGSCv36mm8
Celera876,455,441 - 76,456,385 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.78NCBI
LOC102012695
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955563779,884 - 780,825 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955563779,884 - 780,825 (-)NCBIChiLan1.0ChiLan1.0
LOC100969587
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22013,399,812 - 13,410,910 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11912,517,309 - 12,528,365 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0198,027,916 - 8,029,403 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1198,872,611 - 8,873,654 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl198,872,680 - 8,873,624 (+)Ensemblpanpan1.1panPan2
OR2Z1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,193,396 - 53,196,036 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,994,381 - 52,995,322 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02053,721,708 - 53,722,649 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,721,708 - 53,722,649 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,921,747 - 52,922,686 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,369,697 - 53,370,638 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,600,682 - 53,601,624 (+)NCBIUU_Cfam_GSD_1.0
LOC101964876
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118212,402,210 - 212,403,188 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365885,431,595 - 5,432,539 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365885,431,595 - 5,432,539 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100737385
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,637,292 - 70,638,221 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,637,292 - 70,638,221 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,047,593 - 71,048,522 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Olr1096
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:32
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000019271
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat

Markers in Region
D7Got204  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0719,244,001 - 19,244,271NCBIRnor5.0
RGSC_v3.4716,552,723 - 16,552,990UniSTSRGSC3.4
Celera713,695,563 - 13,695,830UniSTS
Cytogenetic Map7q13UniSTS
Cytogenetic Map7q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hemolymphoid system hepatobiliary system nervous system reproductive system
High
Medium
Low 8 4
Below cutoff 3 3 1 3 3 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000019271   ⟹   ENSRNOP00000019271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl41,841,955 - 1,843,031 (+)Ensembl
RefSeq Acc Id: NM_001000485   ⟹   NP_001000485
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8715,509,409 - 15,510,359 (-)NCBI
mRatBN7.2714,774,197 - 14,775,147 (-)NCBI
Rnor_6.041,841,955 - 1,843,031 (+)NCBI
Rnor_5.041,901,035 - 1,902,111 (+)NCBI
RGSC_v3.4716,550,153 - 16,551,103 (-)RGD
Celera713,692,993 - 13,693,943 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000485 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001000485   ⟸   NM_001000485
- UniProtKB: D4ACL1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000019271   ⟸   ENSRNOT00000019271

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ACL1-F1-model_v2 AlphaFold D4ACL1 1-316 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1334055 AgrOrtholog
BioCyc Gene G2FUF-34703 BioCyc
Ensembl Genes ENSRNOG00000014386 Ensembl
NCBI Gene 302027 ENTREZGENE
PhenoGen Olr1096 PhenoGen
RatGTEx ENSRNOG00000014386 RatGTEx
UniProt D4ACL1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Olr1096  olfactory receptor 1096   Olr1096_predicted  olfactory receptor 1096 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1096_predicted  olfactory receptor 1096 (predicted)      Symbol and Name status set to approved 70820 APPROVED