Asb13 (ankyrin repeat and SOCS box-containing 13)

Gene: Asb13 (ankyrin repeat and SOCS box-containing 13) Rattus norvegicus

Analyze

Symbol:

Asb13

Name:

ankyrin repeat and SOCS box-containing 13

RGD ID:

1310387

Description:

Predicted to be involved in intracellular signal transduction and protein ubiquitination. Orthologous to human ASB13 (ankyrin repeat and SOCS box containing 13); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ankyrin repeat and SOCS box protein 13; ankyrin repeat and SOCS box-containing protein 13; LOC361268

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	71,474,531 - 71,493,238 (-)	NCBI		GRCr8
mRatBN7.2	17	66,564,653 - 66,583,365 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	66,562,434 - 66,583,337 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	70,052,202 - 70,068,804 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	73,881,014 - 73,897,618 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	67,924,020 - 67,940,624 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	70,215,401 - 70,234,103 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	70,215,401 - 70,234,103 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	71,918,385 - 71,937,087 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	77,759,058 - 77,777,760 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	77,770,217 - 77,788,536 (-)	NCBI
Celera	17	66,069,839 - 66,088,432 (-)	NCBI		Celera
Cytogenetic Map	17	q12.2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hypoparathyroidism-deafness-renal disease syndrome (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amitrole (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bilirubin IXalpha (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

carbamazepine (ISO)

chlorpyrifos (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

iron dichloride (ISO)

L-methionine (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

ochratoxin A (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

raloxifene (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

testosterone (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

triclosan (ISO)

triptonide (ISO)

vinclozolin (EXP)

XL147 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular signal transduction (IEA)

protein ubiquitination (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Asb13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	71,474,531 - 71,493,238 (-)	NCBI		GRCr8
mRatBN7.2	17	66,564,653 - 66,583,365 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	66,562,434 - 66,583,337 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	70,052,202 - 70,068,804 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	73,881,014 - 73,897,618 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	67,924,020 - 67,940,624 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	70,215,401 - 70,234,103 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	70,215,401 - 70,234,103 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	71,918,385 - 71,937,087 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	77,759,058 - 77,777,760 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	77,770,217 - 77,788,536 (-)	NCBI
Celera	17	66,069,839 - 66,088,432 (-)	NCBI		Celera
Cytogenetic Map	17	q12.2	NCBI

ASB13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	5,638,867 - 5,666,595 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	5,638,867 - 5,666,595 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	5,680,830 - 5,708,558 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	5,720,837 - 5,748,547 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	5,720,836 - 5,748,547	NCBI
Celera	10	5,611,177 - 5,638,957 (-)	NCBI		Celera
Cytogenetic Map	10	p15.1	NCBI
HuRef	10	5,611,116 - 5,638,700 (-)	NCBI		HuRef
CHM1_1	10	5,680,794 - 5,708,499 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	5,642,670 - 5,670,391 (-)	NCBI		T2T-CHM13v2.0

Asb13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	3,683,589 - 3,703,822 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	3,684,032 - 3,703,822 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	3,633,589 - 3,653,822 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	3,634,032 - 3,653,822 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	3,633,322 - 3,651,025 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	3,633,322 - 3,651,025 (+)	NCBI		MGSCv36	mm8
Celera	13	3,623,459 - 3,641,171 (+)	NCBI		Celera
Cytogenetic Map	13	A1	NCBI
cM Map	13	2.03	NCBI

Asb13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	22,327,523 - 22,349,641 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955421	22,328,393 - 22,380,656 (-)	NCBI	ChiLan1.0	ChiLan1.0

ASB13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	18,192,818 - 18,223,299 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	18,198,143 - 18,228,626 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	5,680,437 - 5,708,159 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	5,665,422 - 5,679,328 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	5,665,422 - 5,680,363 (-)	Ensembl	panpan1.1		panPan2

ASB13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	30,244,619 - 30,314,314 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	30,293,451 - 30,311,817 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	27,323,161 - 27,344,242 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	30,673,926 - 30,695,015 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	2	27,770,902 - 27,791,970 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	28,607,703 - 28,628,724 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	29,325,581 - 29,346,667 (+)	NCBI		UU_Cfam_GSD_1.0

Asb13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	32,690,238 - 32,708,742 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	8,855,399 - 8,875,018 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	8,855,456 - 8,873,940 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ASB13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	65,275,532 - 65,303,223 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	65,274,476 - 65,302,345 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	71,390,060 - 71,416,926 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ASB13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	5,749,487 - 5,778,241 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666051	11,049,553 - 11,079,556 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Asb13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	499,426 - 514,934 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624775	497,711 - 514,963 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Asb13
130 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	519
Count of miRNA genes:	247
Interacting mature miRNAs:	307
Transcripts:	ENSRNOT00000024200
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	28409147	73409147	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	28409147	73409147	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	31368391	73951021	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	34550843	73951021	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	35837085	69599340	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	0.00000071	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	17	42073160	69599340	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	42073160	69599340	Rat
7411575	Bw140	Body weight QTL 140	30.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
8694181	Bw151	Body weight QTL 151	4.36	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	49920154	86533673	Rat
2303580	Gluco49	Glucose level QTL 49	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	50040271	86533673	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	50909099	86022412	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	53498828	82479847	Rat
70210	Cm15	Cardiac mass QTL 15	6.5		heart right ventricle mass (VT:0007033)	heart right ventricle wet weight (CMO:0000072)	17	57246723	70156904	Rat
1600398	Edcs5	Endometrial carcinoma susceptibility QTL 5	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	17	57246723	70852846	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	57246843	82046127	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	59005649	77910000	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	60781426	86533673	Rat
7411577	Bw141	Body weight QTL 141		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	62619516	86533673	Rat
1300131	Bp193	Blood pressure QTL 193	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	63640009	73951021	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	65703580	81153923	Rat

Markers in Region

BE113707

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	107,577,282 - 107,577,441 (-)	MAPPER	mRatBN7.2
mRatBN7.2	2	107,577,282 - 107,577,441 (+)	MAPPER	mRatBN7.2
mRatBN7.2	17	66,565,013 - 66,565,171 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	70,215,762 - 70,215,919	NCBI	Rnor6.0
Rnor_6.0	2	110,363,966 - 110,364,124	NCBI	Rnor6.0
Rnor_5.0	17	71,918,746 - 71,918,903	UniSTS	Rnor5.0
Rnor_5.0	2	130,081,759 - 130,081,917	UniSTS	Rnor5.0
RGSC_v3.4	2	110,420,185 - 110,420,343	UniSTS	RGSC3.4
RGSC_v3.4	17	77,759,419 - 77,759,576	UniSTS	RGSC3.4
Celera	17	66,070,200 - 66,070,357	UniSTS
Celera	2	102,843,548 - 102,843,706	UniSTS
RH 3.4 Map	17	635.5	UniSTS
Cytogenetic Map	2	q24	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BE106817

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	66,582,071 - 66,582,243 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	70,232,808 - 70,232,979	NCBI	Rnor6.0
Rnor_5.0	17	71,935,792 - 71,935,963	UniSTS	Rnor5.0
RGSC_v3.4	17	77,776,465 - 77,776,636	UniSTS	RGSC3.4
Celera	17	66,087,137 - 66,087,308	UniSTS
RH 3.4 Map	17	638.1	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	2	24	12	19	12			52	27	28	5
Low		41	33	29		29	8	11	22	8	13	6	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000024200 ⟹ ENSRNOP00000024200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	66,562,434 - 66,583,337 (-)	Ensembl
Rnor_6.0 Ensembl	17	70,215,401 - 70,234,103 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103759 ⟹ ENSRNOP00000082449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	66,562,434 - 66,576,211 (-)	Ensembl

RefSeq Acc Id:

NM_001108420 ⟹ NP_001101890

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	71,474,531 - 71,493,238 (-)	NCBI
mRatBN7.2	17	66,564,653 - 66,583,365 (-)	NCBI
Rnor_6.0	17	70,215,401 - 70,234,103 (-)	NCBI
Rnor_5.0	17	71,918,385 - 71,937,087 (-)	NCBI
RGSC_v3.4	17	77,759,058 - 77,777,760 (-)	RGD
Celera	17	66,069,839 - 66,088,432 (-)	RGD

Sequence:

show sequence

CTCAGGTCCGGGCTTTGGTCCCGGCTTTGGTCCCGGCTTAGGTCCGGGCTCAGGTCCCAGCGCT
CAGAGTGACAAGGCCGGTAGGCAGGGGCGCCCAGCCAGCGAGCCGCATGGAGCCGCGCGCCGGG
GACCGCTGCTTCCTGGGAGATGTGGGTTTCTGGGTGGAGCGCACCCCCGTGCATGAGGCCGCTC
AGCGGGGCGAGAGTCTACAGCTTCAGCAGCTGATCAACAGTGGAGCATGTGTTAACCAAGTCAC
TGTGGACTCCATCACGCCCCTTCATGCAGCGAGTCTGCAGGGCCAGGCCCAGTGTGTGCAGCTG
CTGCTGGCTGCTGGCGCCCAGGTGGATGCACGCAACATTGACGGCAGCACCCCACTTTGTGATG
CCTGCGCCTCAGGCAACGTTGAGTGTGTGAAGCTCTTGCTGTCCTATGGGGCGAAAGTCAACCC
TCCTTTGTACACGGCATCCCCGCTACATGAGGCCTGCATGAGTGGGAATTCTGATTGCGTGAGG
CTTCTCATTGATGTTGGGGCCAACCTGGAAGCCCACGATTGCCATTTCGGGACGCCTCTACATG
TTGCCTGTGCACGGGAGCATTTGGACTGTGTCAAAGTGTTGCTCAATGCAGGGGCCAACGTGAA
TGCAGCCAAACTTCACGAGACGGCGCTCCATCATGCGGCCAAGGTAAAGAATGTGGACCTCATC
GTGATGCTCATAGAGTTTGGTGGCAACATCTATGCCCGGGACAACAGGGGCAAGAAGCCCTCGG
ACTACACGTGGAGCAGCAGCGCCCCAGCCAAGTGCTTTGAGTACTATGAAAAGACACCTCTCAC
CCTCTCACAGCTCTGCAGGGTGACCTTGAGGAAGGCCACTGGTGTTCGAGGGCTAGAGAAAGTC
GCCAAGTTGAACATCCCTCCCCGGCTCATCGACTACCTTTCCTACAACTGAGCTGCAGGCAGGA
GGATGGAAAGGCTGGTGACTGGCCCTGTTGTCACCTTGCTATGCCTAGCCCTGGGGTTTAAAGA
CTTCTGCCTGTTTCTCTGAAACACCATCATTGCTGTAGATAGGTTGATGCTCCTTCGTTGATGG
TTGATAGGTTGATGCTTTTCGGTTGTCCTTTTCGATGTCTCCTTCTAAACCCCAGAGGAGGTCT
CTGAAGCACCAGGAGGCCAGTGCGTGACATCACAGCTGTGGATGTAACCCTTGTTATTCCTCTG
GAACTAATGCTGTCAGTCTGAGATGGGCTCAGTTCTCCATGTTTCTCTCTTCGCCGACCACCCT
CAACTAGAGAGACAGTTCAAGGTGGACAGGGAATCCTGGGGACTCAGAACGCTCATGTTGATTG
TCCTCTATCTGGGTGCCATGACACAGAAGCATGAGGTTCCAAGCACTTGACCCTGTGGACTGGA
ATACCACTTTGCTGGCATCTTGCCACTTGGATCGTTTTTCTGGGGCAGCAGCTGACACTTTGCG
AGGTCTAACCTGCACCCAGGCATATCACTCAGGGGCTTTACAGTTCAGAGTGGGGAAGGGCTCA
GACTTTGTACCCCCACAGCAAGCAATGTGTTTTGGGATGACTGTTGTTGCGGCAAATTCCTAAA
AATATTTTTGAGCCTTTTATATCCCGTGCTTGTGCCGGCACCCAGAGCACCCAGAGTGCCCACA
CAGCACTGCGGGGTACTTTTATCTCAGCGGCTCTATGCTGCTCCCAAGTACTCTCAGGCCCAGG
CGGCCCGCAAGCCATTCCAGCGTGGCACCTTGCCATGCTGCTCCCTAGTGTGAGTTCCGGCACT
GGAGGGCCATATGGAACTAGCTATAATTTATCTCTGGTTAGTGTCTCTCCCAGCGGCTCTCTGC
TAGCCGAGAACTCTCTGGTTCCAGATACCTGGTAAAATCAGGGCTCTAGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101890	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78583	(Get FASTA)	NCBI Sequence Viewer
	EDL78584	(Get FASTA)	NCBI Sequence Viewer
	EDL78585	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024200
	ENSRNOP00000024200.2
	ENSRNOP00000082449.1

RefSeq Acc Id:

NP_001101890 ⟸ NM_001108420

- UniProtKB:

D3ZEJ6 (UniProtKB/TrEMBL), A6JLQ6 (UniProtKB/TrEMBL), A0A8I5ZVB3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEPRAGDRCFLGDVGFWVERTPVHEAAQRGESLQLQQLINSGACVNQVTVDSITPLHAASLQGQ
AQCVQLLLAAGAQVDARNIDGSTPLCDACASGNVECVKLLLSYGAKVNPPLYTASPLHEACMSG
NSDCVRLLIDVGANLEAHDCHFGTPLHVACAREHLDCVKVLLNAGANVNAAKLHETALHHAAKV
KNVDLIVMLIEFGGNIYARDNRGKKPSDYTWSSSAPAKCFEYYEKTPLTLSQLCRVTLRKATGV
RGLEKVAKLNIPPRLIDYLSYN

hide sequence

RefSeq Acc Id:

ENSRNOP00000024200 ⟸ ENSRNOT00000024200

RefSeq Acc Id:

ENSRNOP00000082449 ⟸ ENSRNOT00000103759

Protein Domains

SOCS box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZEJ6-F1-model_v2	AlphaFold	D3ZEJ6	1-278	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700552

Promoter ID:

EPDNEW_R11076

Type:

initiation region

Name:

Asb13_1

Description:

ankyrin repeat and SOCS box-containing 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	70,234,038 - 70,234,098	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310387	AgrOrtholog
BioCyc Gene	G2FUF-8814	BioCyc
Ensembl Genes	ENSRNOG00000017967	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024200	ENTREZGENE
	ENSRNOT00000024200.4	UniProtKB/TrEMBL
	ENSRNOT00000103759.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
	SOCS box	UniProtKB/TrEMBL
InterPro	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
	ASB13_SOCS	UniProtKB/TrEMBL
	SOCS_box_dom_like	UniProtKB/TrEMBL
	SOCS_C	UniProtKB/TrEMBL
KEGG Report	rno:361268	UniProtKB/TrEMBL
NCBI Gene	361268	ENTREZGENE
PANTHER	ANKYRIN REPEAT AND SOCS BOX CONTAINING 13	UniProtKB/TrEMBL
	SOWAH (DROSOPHILA) HOMOLOG	UniProtKB/TrEMBL
Pfam	Ank_2	UniProtKB/TrEMBL
	Ank_4	UniProtKB/TrEMBL
	SOCS_box	UniProtKB/TrEMBL
PhenoGen	Asb13	PhenoGen
PRINTS	ANKYRIN	UniProtKB/TrEMBL
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
	SOCS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017967	RatGTEx
SMART	ANK	UniProtKB/TrEMBL
	SOCS_box	UniProtKB/TrEMBL
Superfamily-SCOP	ANK	UniProtKB/TrEMBL
	SSF158235	UniProtKB/TrEMBL
UniProt	A0A8I5ZVB3	ENTREZGENE, UniProtKB/TrEMBL
	A6JLQ6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZEJ6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-25	Asb13	ankyrin repeat and SOCS box-containing 13	Asb13	ankyrin repeat and SOCS box-containing protein 13	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-03	Asb13	ankyrin repeat and SOCS box-containing protein 13	Asb13_predicted	ankyrin repeat and SOCS box-containing 13 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Asb13_predicted	ankyrin repeat and SOCS box-containing 13 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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