Zfp84 (zinc finger protein 84) - Rat Genome Database

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Gene: Zfp84 (zinc finger protein 84) Rattus norvegicus
Analyze
Symbol: Zfp84 (Ensembl: Zfp790)
Name: zinc finger protein 84 (Ensembl:zinc finger protein 790)
RGD ID: 1309815
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to several human genes including ZFP30 (ZFP30 zinc finger protein); INTERACTS WITH bisphenol A; cobalt dichloride; fipronil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AABR07002868.1; LOC308482; ZFP30 zinc finger protein; Zfp790; zinc finger protein 30; zinc finger protein 570; zinc finger protein 790; Znf30
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,114,782 - 94,144,057 (+)NCBIGRCr8
mRatBN7.2184,987,352 - 85,015,478 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,987,377 - 85,002,370 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl185,004,920 - 85,015,478 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx190,398,737 - 90,413,731 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0198,863,184 - 98,878,161 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,156,978 - 92,171,973 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0187,647,051 - 87,662,033 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0188,824,173 - 88,839,114 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,777,391 - 84,792,946 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,785,080 - 84,866,954 (+)NCBI
Celera179,363,772 - 79,378,760 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zfp84
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,114,782 - 94,144,057 (+)NCBIGRCr8
mRatBN7.2184,987,352 - 85,015,478 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,987,377 - 85,002,370 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl185,004,920 - 85,015,478 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx190,398,737 - 90,413,731 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0198,863,184 - 98,878,161 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,156,978 - 92,171,973 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0187,647,051 - 87,662,033 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0188,824,173 - 88,839,114 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,777,391 - 84,792,946 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,785,080 - 84,866,954 (+)NCBI
Celera179,363,772 - 79,378,760 (+)NCBICelera
Cytogenetic Map1q21NCBI
ZNF565
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381936,182,060 - 36,245,928 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1936,182,276 - 36,246,257 (-)EnsemblGRCh38hg38GRCh38
GRCh371936,672,962 - 36,736,830 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361941,365,027 - 41,397,826 (-)NCBINCBI36Build 36hg18NCBI36
Build 341941,360,359 - 41,397,397NCBI
Celera1933,388,355 - 33,421,149 (-)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1933,177,820 - 33,211,581 (-)NCBIHuRef
CHM1_11936,675,206 - 36,707,999 (-)NCBICHM1_1
T2T-CHM13v2.01938,727,556 - 38,794,343 (-)NCBIT2T-CHM13v2.0
Zfp84
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39729,467,977 - 29,480,844 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl729,467,977 - 29,479,246 (+)EnsemblGRCm39 Ensembl
GRCm38729,768,552 - 29,781,419 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl729,768,552 - 29,779,821 (+)EnsemblGRCm38mm10GRCm38
MGSCv37730,553,571 - 30,566,438 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36729,477,418 - 29,487,509 (+)NCBIMGSCv36mm8
Celera724,323,949 - 24,336,842 (+)NCBICelera
Cytogenetic Map7B1NCBI
cM Map717.25NCBI
Znf565
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,412,889 - 2,431,321 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,409,858 - 2,428,153 (+)NCBIChiLan1.0ChiLan1.0
ZNF790
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22042,939,749 - 42,993,059 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11944,824,868 - 44,877,788 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01933,762,837 - 33,811,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11942,956,493 - 43,004,721 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1942,980,457 - 42,988,373 (+)Ensemblpanpan1.1panPan2
ZNF790
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11115,694,742 - 115,722,622 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1115,702,397 - 115,721,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1115,104,560 - 115,132,877 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01116,299,197 - 116,327,580 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1116,307,099 - 116,326,959 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11115,869,444 - 115,897,764 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01115,488,344 - 115,516,662 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01116,538,941 - 116,567,287 (+)NCBIUU_Cfam_GSD_1.0
Znf565
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,408,297 - 11,423,559 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936922178,163 - 186,800 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936922178,959 - 193,620 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF565
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,542,285 - 45,576,887 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,543,071 - 45,576,966 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2641,044,080 - 41,056,112 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF790
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1631,658,741 - 31,686,601 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl631,658,883 - 31,664,367 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660739,578,950 - 9,607,473 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf565
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479410,410,610 - 10,428,516 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479410,408,775 - 10,462,544 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp84
270 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1000
Count of miRNA genes:341
Interacting mature miRNAs:457
Transcripts:ENSRNOT00000035994
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat

Markers in Region
RH129422  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2184,999,791 - 84,999,974 (+)MAPPERmRatBN7.2
Rnor_6.0187,659,455 - 87,659,637NCBIRnor6.0
Rnor_5.0188,836,536 - 88,836,718UniSTSRnor5.0
RGSC_v3.4184,790,368 - 84,790,550UniSTSRGSC3.4
Celera179,376,182 - 79,376,364UniSTS
RH 3.4 Map1850.2UniSTS
Cytogenetic Map1q21UniSTS
RH144387  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2185,001,818 - 85,002,004 (+)MAPPERmRatBN7.2
Rnor_6.0187,661,482 - 87,661,667NCBIRnor6.0
Rnor_5.0188,838,563 - 88,838,748UniSTSRnor5.0
RGSC_v3.4184,792,395 - 84,792,580UniSTSRGSC3.4
Celera179,378,209 - 79,378,394UniSTS
RH 3.4 Map1848.2UniSTS
Cytogenetic Map1q21UniSTS
BF395871  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2184,978,522 - 84,978,710 (+)MAPPERmRatBN7.2
Rnor_6.0187,638,201 - 87,638,388NCBIRnor6.0
Rnor_5.0188,815,282 - 88,815,469UniSTSRnor5.0
RGSC_v3.4184,768,500 - 84,768,687UniSTSRGSC3.4
Celera179,355,020 - 79,355,207UniSTS
RH 3.4 Map1850.2UniSTS
Cytogenetic Map1q21UniSTS
RH140809  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2185,000,504 - 85,000,649 (+)MAPPERmRatBN7.2
Rnor_6.0187,660,168 - 87,660,312NCBIRnor6.0
Rnor_5.0188,837,249 - 88,837,393UniSTSRnor5.0
RGSC_v3.4184,791,081 - 84,791,225UniSTSRGSC3.4
Celera179,376,895 - 79,377,039UniSTS
RH 3.4 Map1848.0UniSTS
Cytogenetic Map1q21UniSTS
RH140964  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2184,989,143 - 84,989,352 (+)MAPPERmRatBN7.2
Rnor_6.0187,648,807 - 87,649,015NCBIRnor6.0
Rnor_5.0188,825,888 - 88,826,096UniSTSRnor5.0
RGSC_v3.4184,779,720 - 84,779,928UniSTSRGSC3.4
Celera179,365,534 - 79,365,742UniSTS
RH 3.4 Map1848.8UniSTS
Cytogenetic Map1q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2
Low 3 43 57 41 19 41 8 11 72 35 38 11 8
Below cutoff 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000028158   ⟹   ENSRNOP00000028158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl187,697,005 - 87,710,500 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000035994   ⟹   ENSRNOP00000029398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl184,987,379 - 85,002,370 (+)Ensembl
Rnor_6.0 Ensembl187,655,618 - 87,662,040 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000072762   ⟹   ENSRNOP00000066106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,207,579 - 85,257,505 (+)Ensembl
Rnor_6.0 Ensembl188,324,339 - 88,336,407 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000073521   ⟹   ENSRNOP00000066294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl187,655,732 - 87,911,299 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000074299   ⟹   ENSRNOP00000064170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl187,903,783 - 87,915,794 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077161   ⟹   ENSRNOP00000074660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl187,650,207 - 87,657,930 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088772   ⟹   ENSRNOP00000071787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,004,920 - 85,015,478 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099040   ⟹   ENSRNOP00000077226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl184,987,377 - 85,002,370 (+)Ensembl
RefSeq Acc Id: NM_001107500   ⟹   NP_001100970
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,114,823 - 94,129,813 (+)NCBI
mRatBN7.2184,987,379 - 85,002,370 (+)NCBI
Rnor_6.0187,647,051 - 87,662,033 (+)NCBI
Rnor_5.0188,824,173 - 88,839,114 (+)NCBI
RGSC_v3.4184,777,391 - 84,792,946 (+)RGD
Celera179,363,772 - 79,378,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006228698   ⟹   XP_006228760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,128,018 - 94,144,057 (+)NCBI
mRatBN7.2185,004,872 - 85,015,478 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111584   ⟹   XP_038967512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,128,018 - 94,144,057 (+)NCBI
mRatBN7.2185,004,872 - 85,015,478 (+)NCBI
RefSeq Acc Id: XM_039111585   ⟹   XP_038967513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,114,782 - 94,144,057 (+)NCBI
mRatBN7.2184,987,352 - 85,015,478 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001100970   ⟸   NM_001107500
- UniProtKB: D3ZD53 (UniProtKB/TrEMBL),   A6J9R4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000028158   ⟸   ENSRNOT00000028158
RefSeq Acc Id: ENSRNOP00000074660   ⟸   ENSRNOT00000077161
RefSeq Acc Id: ENSRNOP00000066106   ⟸   ENSRNOT00000072762
RefSeq Acc Id: ENSRNOP00000029398   ⟸   ENSRNOT00000035994
RefSeq Acc Id: ENSRNOP00000066294   ⟸   ENSRNOT00000073521
RefSeq Acc Id: ENSRNOP00000064170   ⟸   ENSRNOT00000074299
RefSeq Acc Id: XP_038967513   ⟸   XM_039111585
- Peptide Label: isoform X3
RefSeq Acc Id: XP_006228760   ⟸   XM_006228698
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K1C5 (UniProtKB/TrEMBL),   A6J9R5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038967512   ⟸   XM_039111584
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000077226   ⟸   ENSRNOT00000099040
RefSeq Acc Id: ENSRNOP00000071787   ⟸   ENSRNOT00000088772
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K1C5-F1-model_v2 AlphaFold A0A0G2K1C5 1-467 view protein structure
AF-D4A8J5-F1-model_v2 AlphaFold D4A8J5 1-813 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309815 AgrOrtholog
BioCyc Gene G2FUF-60172 BioCyc
Ensembl Genes ENSRNOG00000029043 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000046652 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000055519 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035994 ENTREZGENE
  ENSRNOT00000035994.7 UniProtKB/TrEMBL
  ENSRNOT00000072762.4 UniProtKB/TrEMBL
  ENSRNOT00000088772.2 UniProtKB/TrEMBL
  ENSRNOT00000099040.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:308482 UniProtKB/TrEMBL
NCBI Gene 308482 ENTREZGENE
PANTHER PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  RCG54037 UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 345-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 582 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 711 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_4 UniProtKB/TrEMBL
PhenoGen Zfp84 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029043 RatGTEx
  ENSRNOG00000046652 RatGTEx
  ENSRNOG00000055519 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2K1C5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y620_RAT UniProtKB/TrEMBL
  A6J9R4 ENTREZGENE, UniProtKB/TrEMBL
  A6J9R5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZD53 ENTREZGENE, UniProtKB/TrEMBL
  M0R9D8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-02-24 Zfp84  zinc finger protein 84  Zfp790  zinc finger protein 790  Name and Symbol changed 629549 APPROVED
2022-06-02 Zfp790  zinc finger protein 790  AABR07002868.1    Data merged from RGD:15009524 737654 PROVISIONAL
2021-06-07 Zfp790  zinc finger protein 790  Znf30  zinc finger protein 30  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-06-01 Znf30  zinc finger protein 30  Zfp84  zinc finger protein 84  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-06-01 Zfp84  zinc finger protein 84  Zfp30  ZFP30 zinc finger protein  Data merged from RGD:6500781 737654 PROVISIONAL
2019-11-08 AABR07002868.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2014-07-25 Zfp30  ZFP30 zinc finger protein  LOC100910007  zinc finger protein 30-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100910007  zinc finger protein 30-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Zfp84  zinc finger protein 84   Zfp84_predicted  zinc finger protein 84 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zfp84_predicted  zinc finger protein 84 (predicted)      Symbol and Name status set to approved 70820 APPROVED