Stk38 (serine/threonine kinase 38) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Stk38 (serine/threonine kinase 38) Rattus norvegicus
Analyze
Symbol: Stk38
Name: serine/threonine kinase 38
RGD ID: 1309455
Description: Predicted to enable several functions, including ATP binding activity; UFM1-modified protein reader activity; and histone reader activity. Involved in postsynapse organization. Is active in glutamatergic synapse. Orthologous to human STK38 (serine/threonine kinase 38); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361813; MGC109574; serine/threonine-protein kinase 38
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,035,923 - 7,070,657 (-)NCBIGRCr8
mRatBN7.2207,034,245 - 7,067,803 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,034,242 - 7,068,198 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,746,129 - 7,779,641 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,107,989 - 7,141,501 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,582,947 - 7,616,454 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,224,300 - 6,257,613 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,224,296 - 6,257,604 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0208,472,801 - 8,506,196 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,257,546 - 7,264,441 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1207,257,777 - 7,264,668 (-)NCBI
Celera208,585,884 - 8,592,779 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
bucladesine  (ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP,ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hydralazine  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
iron dichloride  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
medroxyprogesterone acetate  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
testosterone enanthate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
7. Chemical genetic identification of NDR1/2 kinase substrates AAK1 and Rabin8 Uncovers their roles in dendrite arborization and spine development. Ultanir SK, etal., Neuron. 2012 Mar 22;73(6):1127-42. doi: 10.1016/j.neuron.2012.01.019. Epub 2012 Mar 21.
Additional References at PubMed
PMID:7761441   PMID:12493777   PMID:17906693   PMID:25468996  


Genomics

Comparative Map Data
Stk38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,035,923 - 7,070,657 (-)NCBIGRCr8
mRatBN7.2207,034,245 - 7,067,803 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,034,242 - 7,068,198 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,746,129 - 7,779,641 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,107,989 - 7,141,501 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,582,947 - 7,616,454 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,224,300 - 6,257,613 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,224,296 - 6,257,604 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0208,472,801 - 8,506,196 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,257,546 - 7,264,441 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1207,257,777 - 7,264,668 (-)NCBI
Celera208,585,884 - 8,592,779 (-)NCBICelera
Cytogenetic Map20p12NCBI
STK38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,493,892 - 36,547,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,493,892 - 36,547,479 (-)EnsemblGRCh38hg38GRCh38
GRCh37636,461,669 - 36,515,256 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,569,647 - 36,623,225 (-)NCBINCBI36Build 36hg18NCBI36
Build 34636,569,647 - 36,623,225NCBI
Celera638,016,709 - 38,070,290 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef636,180,534 - 36,234,118 (-)NCBIHuRef
CHM1_1636,463,467 - 36,517,045 (-)NCBICHM1_1
T2T-CHM13v2.0636,314,555 - 36,368,143 (-)NCBIT2T-CHM13v2.0
Stk38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,189,854 - 29,226,979 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,189,854 - 29,226,969 (-)EnsemblGRCm39 Ensembl
GRCm381728,970,880 - 29,008,010 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,970,880 - 29,007,995 (-)EnsemblGRCm38mm10GRCm38
MGSCv371729,107,830 - 29,144,882 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,698,474 - 28,735,604 (-)NCBIMGSCv36mm8
Celera1729,526,832 - 29,564,008 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.03NCBI
Stk38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554374,142,285 - 4,186,373 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554374,142,285 - 4,186,376 (-)NCBIChiLan1.0ChiLan1.0
STK38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2550,963,053 - 51,016,986 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1646,832,690 - 46,886,644 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,056,585 - 36,110,531 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,255,183 - 37,308,102 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,255,183 - 37,308,102 (-)Ensemblpanpan1.1panPan2
STK38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,594,090 - 5,636,581 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,595,840 - 5,636,692 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha125,613,974 - 5,655,643 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,942,106 - 5,984,662 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,942,112 - 5,984,782 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,597,466 - 5,640,022 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,675,922 - 5,718,477 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,775,775 - 5,817,428 (-)NCBIUU_Cfam_GSD_1.0
Stk38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,069,180 - 41,117,761 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647622,842,477 - 22,891,057 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647622,842,477 - 22,891,057 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STK38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,206,541 - 32,253,624 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1732,206,532 - 32,253,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,107,044 - 37,154,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STK38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11735,587,246 - 35,641,555 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1735,587,256 - 35,642,279 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604436,437,565 - 36,491,888 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stk38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,227,417 - 21,271,964 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475421,220,121 - 21,271,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stk38
150 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:279
Count of miRNA genes:174
Interacting mature miRNAs:213
Transcripts:ENSRNOT00000059194
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20669170617489458Rat

Markers in Region
RH130240  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2207,034,454 - 7,034,644 (+)MAPPERmRatBN7.2
Rnor_6.0206,224,509 - 6,224,698NCBIRnor6.0
Rnor_5.0208,473,011 - 8,473,200UniSTSRnor5.0
RGSC_v3.4207,257,754 - 7,257,943UniSTSRGSC3.4
Celera208,586,092 - 8,586,281UniSTS
RH 3.4 Map2077.2UniSTS
Cytogenetic Map20p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 32 57 41 19 41 2 5 74 35 39 11 2
Low 11 6 6 2 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000059194   ⟹   ENSRNOP00000055967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl207,034,244 - 7,068,198 (-)Ensembl
Rnor_6.0 Ensembl206,225,800 - 6,251,634 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl206,227,289 - 6,229,232 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl206,229,246 - 6,229,634 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl207,034,242 - 7,042,381 (-)Ensembl
Rnor_6.0 Ensembl206,224,301 - 6,231,196 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl206,234,677 - 6,235,612 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092453   ⟹   ENSRNOP00000075822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl206,227,760 - 6,234,703 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092489   ⟹   ENSRNOP00000075924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl207,034,244 - 7,068,198 (-)Ensembl
Rnor_6.0 Ensembl206,224,296 - 6,257,604 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl206,227,913 - 6,228,561 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl206,236,382 - 6,236,878 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104223   ⟹   ENSRNOP00000078786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl207,034,244 - 7,062,892 (-)Ensembl
RefSeq Acc Id: NM_001398991   ⟹   NP_001385920
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,035,923 - 7,069,439 (-)NCBI
mRatBN7.2207,034,247 - 7,067,773 (-)NCBI
RefSeq Acc Id: XM_006256139   ⟹   XP_006256201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,035,923 - 7,070,657 (-)NCBI
mRatBN7.2207,034,245 - 7,067,803 (-)NCBI
Rnor_6.0206,224,301 - 6,257,613 (-)NCBI
Rnor_5.0208,472,801 - 8,506,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063279223   ⟹   XP_063135293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,035,923 - 7,070,657 (-)NCBI
RefSeq Acc Id: XM_063279224   ⟹   XP_063135294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,035,923 - 7,070,657 (-)NCBI
RefSeq Acc Id: XM_063279225   ⟹   XP_063135295
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,035,923 - 7,070,657 (-)NCBI
RefSeq Acc Id: XM_063279226   ⟹   XP_063135296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,035,923 - 7,064,454 (-)NCBI
RefSeq Acc Id: XM_063279227   ⟹   XP_063135297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,035,923 - 7,064,559 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006256201   ⟸   XM_006256139
- Peptide Label: isoform X4
- UniProtKB: G3V9Q4 (UniProtKB/TrEMBL),   Q5BJM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075924   ⟸   ENSRNOT00000092489
RefSeq Acc Id: ENSRNOP00000075822   ⟸   ENSRNOT00000092453
RefSeq Acc Id: ENSRNOP00000055967   ⟸   ENSRNOT00000059194
RefSeq Acc Id: ENSRNOP00000078786   ⟸   ENSRNOT00000104223
RefSeq Acc Id: NP_001385920   ⟸   NM_001398991
- UniProtKB: A6JJT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135294   ⟸   XM_063279224
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063135295   ⟸   XM_063279225
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063135293   ⟸   XM_063279223
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063135297   ⟸   XM_063279227
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063135296   ⟸   XM_063279226
- Peptide Label: isoform X5
Protein Domains
AGC-kinase C-terminal   Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9Q4-F1-model_v2 AlphaFold G3V9Q4 1-465 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701441
Promoter ID:EPDNEW_R11962
Type:multiple initiation site
Name:Stk38_1
Description:serine/threonine kinase 38
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0206,257,595 - 6,257,655EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309455 AgrOrtholog
BioCyc Gene G2FUF-4397 BioCyc
Ensembl Genes ENSRNOG00000000519 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059194.5 UniProtKB/TrEMBL
  ENSRNOT00000092400.2 UniProtKB/TrEMBL
  ENSRNOT00000092489 ENTREZGENE
  ENSRNOT00000092489.2 UniProtKB/TrEMBL
  ENSRNOT00000104223.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7365181 IMAGE-MGC_LOAD
InterPro AGC-kinase_C UniProtKB/TrEMBL
  Kinase-like_dom UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report rno:361813 UniProtKB/TrEMBL
MGC_CLONE MGC:109574 IMAGE-MGC_LOAD
NCBI Gene 361813 ENTREZGENE
PANTHER MYOTONIC DYSTROPHY S/T KINASE-RELATED UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE 38 UniProtKB/TrEMBL
  SPRY DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
PharmGKB STK38 RGD
PhenoGen Stk38 PhenoGen
PROSITE AGC_KINASE_CTER UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000519 RatGTEx
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP Kinase_like UniProtKB/TrEMBL
UniProt A0A0G2QBZ7_RAT UniProtKB/TrEMBL
  A0A0U1RS40_RAT UniProtKB/TrEMBL
  A0A8I5ZLY4_RAT UniProtKB/TrEMBL
  A0A8I6GKQ3_RAT UniProtKB/TrEMBL
  A6JJT1 ENTREZGENE, UniProtKB/TrEMBL
  G3V9Q4 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJM9 ENTREZGENE
UniProt Secondary Q5BJM9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Stk38  serine/threonine kinase 38  Stk38_predicted  serine/threonine kinase 38 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Stk38_predicted  serine/threonine kinase 38 (predicted)      Symbol and Name status set to approved 70820 APPROVED