Ipo5 (importin 5) - Rat Genome Database

Name: Ipo5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ipo5 (importin 5) Rattus norvegicus

Analyze

Symbol:

Ipo5

Name:

importin 5

RGD ID:

1308715

Description:

Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in several processes, including cytoplasmic pattern recognition receptor signaling pathway; positive regulation of protein import into nucleus; and protein import into nucleus. Predicted to be located in Golgi apparatus; cytosol; and nucleus. Predicted to be active in cytoplasm and nucleus. Orthologous to human IPO5 (importin 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

importin-5; karyopherin (importin) beta 3; Kpnb3; LOC306182; RAN binding protein 5; Ranbp5; similar to RAN binding protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	IPO5 (importin 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ipo5 (importin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ipo5 (importin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	IPO5 (importin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	IPO5 (importin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ipo5 (importin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	IPO5 (importin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	IPO5 (importin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ipo5 (importin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ipo5 (importin 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	IPO5 (importin 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kpnb3 (karyopherin (importin) beta 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PSE1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Karybeta3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	imb-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ipo5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	104,397,626 - 104,447,985 (+)	NCBI		GRCr8
mRatBN7.2	15	97,990,755 - 98,041,074 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	98,005,299 - 98,041,126 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	106,243,110 - 106,293,326 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	106,257,650 - 106,292,112 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	109,639,020 - 109,689,209 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	105,944,155 - 106,021,407 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	105,983,354 - 106,037,884 (+)	NCBI
Celera	15	96,799,493 - 96,849,477 (+)	NCBI		Celera
Cytogenetic Map	15	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anal Atresia, Hypospadias, and Penoscrotal Inversion (ISO)

Animal Disease Models (ISO)

holoprosencephaly 5 (ISO)

lung adenocarcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-amino-14,16-dimethyloctadecan-3-ol (ISO)

2-methoxyethanol (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antimycin A (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

calcitriol (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

clofibrate (ISO)

cobalt dichloride (EXP,ISO)

coumarin (ISO)

decabromodiphenyl ether (EXP)

deguelin (ISO)

dicrotophos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

ethanol (ISO)

fenpyroximate (ISO)

fenvalerate (EXP)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

inulin (ISO)

ivermectin (ISO)

ketoconazole (ISO)

lovastatin (ISO)

mercury dichloride (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

miconazole (ISO)

nefazodone (EXP)

nimesulide (EXP)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

paraquat (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

tamibarotene (ISO)

tebufenpyrad (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thifluzamide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

warfarin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to amino acid stimulus (ISO)

cytoplasmic pattern recognition receptor signaling pathway (ISO)

NLS-bearing protein import into nucleus (ISO)

positive regulation of protein import into nucleus (ISO)

protein import into nucleus (IBA,ISO)

ribosomal protein import into nucleus (ISO)

Cellular Component

cytoplasm (IBA,ISO)

cytosol (IEA,ISO)

Golgi apparatus (IEA,ISO)

nuclear membrane (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

Molecular Function

nuclear import signal receptor activity (IBA,ISO)

nuclear localization sequence binding (IBA)

protein binding (ISO)

small GTPase binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9687515	PMID:17143267	PMID:18504258	PMID:19946888	PMID:22681889	PMID:22730302

Genomics

Comparative Map Data

Ipo5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	104,397,626 - 104,447,985 (+)	NCBI		GRCr8
mRatBN7.2	15	97,990,755 - 98,041,074 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	98,005,299 - 98,041,126 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	106,243,110 - 106,293,326 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	106,257,650 - 106,292,112 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	109,639,020 - 109,689,209 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	105,944,155 - 106,021,407 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	105,983,354 - 106,037,884 (+)	NCBI
Celera	15	96,799,493 - 96,849,477 (+)	NCBI		Celera
Cytogenetic Map	15	q24	NCBI

IPO5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	97,953,675 - 98,024,296 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	97,953,658 - 98,024,296 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	98,605,929 - 98,676,550 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	97,403,930 - 97,474,551 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	13	79,453,341 - 79,523,964 (+)	NCBI		Celera
Cytogenetic Map	13	q32.2	NCBI
HuRef	13	79,203,817 - 79,274,125 (+)	NCBI		HuRef
CHM1_1	13	98,576,302 - 98,646,937 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	97,160,508 - 97,231,138 (+)	NCBI		T2T-CHM13v2.0

Ipo5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	121,134,271 - 121,185,451 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	121,148,636 - 121,185,411 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	120,896,840 - 120,948,046 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	120,911,224 - 120,947,999 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	121,310,416 - 121,347,268 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	120,046,431 - 120,083,179 (+)	NCBI		MGSCv36	mm8
Celera	14	119,467,218 - 119,497,933 (+)	NCBI		Celera
Cytogenetic Map	14	E4- E5	NCBI
cM Map	14	64.81	NCBI

Ipo5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	12,416,755 - 12,459,452 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955404	12,416,755 - 12,480,281 (-)	NCBI	ChiLan1.0	ChiLan1.0

IPO5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	99,471,672 - 99,541,033 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	98,140,454 - 98,209,817 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	79,115,320 - 79,185,598 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	98,295,472 - 98,336,707 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	98,294,766 - 98,336,700 (+)	Ensembl	panpan1.1		panPan2

IPO5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	48,126,053 - 48,182,897 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	48,136,242 - 48,180,495 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	47,906,269 - 47,965,065 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	48,566,642 - 48,625,469 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	48,566,671 - 48,625,439 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	48,215,943 - 48,274,722 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	48,249,947 - 48,308,738 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	48,285,886 - 48,344,697 (+)	NCBI		UU_Cfam_GSD_1.0

Ipo5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	183,675,492 - 183,720,213 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	12,229,922 - 12,271,964 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	12,231,970 - 12,271,639 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IPO5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	67,004,109 - 67,060,551 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	67,019,299 - 67,059,375 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	74,138,179 - 74,173,295 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IPO5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	76,644,113 - 76,690,718 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	76,644,131 - 76,692,146 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	33,103,550 - 33,150,436 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ipo5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	12,969,459 - 13,004,139 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	12,971,397 - 13,004,126 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ipo5
146 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	596
Count of miRNA genes:	199
Interacting mature miRNAs:	238
Transcripts:	ENSRNOT00000014859, ENSRNOT00000072538
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70155	Gcs1	Gastric cancer susceptibility QTL1	3.8		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	15	76306099	101769107	Rat
631655	Bp126	Blood pressure QTL 126	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	58156477	101769107	Rat
731177	Uae26	Urinary albumin excretion QTL 26	2.4	0.025	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	15	67588667	101769107	Rat
1300118	Bp190	Blood pressure QTL 190	2.94		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	15	82262520	98288169	Rat
1300120	Kidm7	Kidney mass QTL 7	3.55		kidney mass (VT:0002707)	left kidney wet weight to body weight ratio (CMO:0001954)	15	82262520	98288169	Rat
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	40631268	98288169	Rat
1549844	Bss7	Bone structure and strength QTL 7	6.4		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	15	75788062	101769107	Rat
1641889	Colcr6	Colorectal carcinoma resistance QTL 6	2.9	0.0126	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	15	73690518	99794247	Rat
1576315	Schws6	Schwannoma susceptibility QTL 6		0.0069	nervous system integrity trait (VT:0010566)	post-insult time of death (CMO:0002005)	15	53806152	98806152	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat
2300326	Plaw1	Placental weight QTL 1	15	0.005	placenta mass (VT:0004257)	placenta wet weight (CMO:0002088)	15	68327165	100062518	Rat
2317055	Aia10	Adjuvant induced arthritis QTL 10	3.41		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	75788062	101769107	Rat

Markers in Region

RH130384

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	12,037,710 - 12,037,891 (-)	MAPPER	mRatBN7.2
mRatBN7.2	15	98,039,233 - 98,039,872 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	106,291,486 - 106,292,124	NCBI	Rnor6.0
Rnor_6.0	18	15,440,311 - 15,440,491	NCBI	Rnor6.0
Rnor_5.0	18	15,219,000 - 15,219,180	UniSTS	Rnor5.0
Rnor_5.0	15	109,687,385 - 109,688,023	UniSTS	Rnor5.0
RGSC_v3.4	18	12,501,618 - 12,501,798	UniSTS	RGSC3.4
RGSC_v3.4	15	106,020,163 - 106,020,801	UniSTS	RGSC3.4
Celera	15	96,847,637 - 96,848,275	UniSTS
Celera	18	12,045,603 - 12,045,783	UniSTS
Cytogenetic Map	15	q24	UniSTS

RH133768

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	98,040,273 - 98,040,459 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	106,292,526 - 106,292,711	NCBI	Rnor6.0
Rnor_5.0	15	109,688,425 - 109,688,610	UniSTS	Rnor5.0
RGSC_v3.4	15	106,021,203 - 106,021,388	UniSTS	RGSC3.4
Celera	15	96,848,677 - 96,848,862	UniSTS
Celera	15	93,556,470 - 93,556,654	UniSTS
RH 3.4 Map	15	644.7	UniSTS
Cytogenetic Map	15	q24	UniSTS

RH140893

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	98,040,776 - 98,040,976 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	106,293,029 - 106,293,228	NCBI	Rnor6.0
Rnor_5.0	15	109,688,928 - 109,689,127	UniSTS	Rnor5.0
RGSC_v3.4	15	106,021,706 - 106,021,905	UniSTS	RGSC3.4
Celera	15	96,849,180 - 96,849,379	UniSTS
RH 3.4 Map	15	687.7	UniSTS
Cytogenetic Map	15	q24	UniSTS

C76941

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	12,037,856 - 12,038,058 (-)	MAPPER	mRatBN7.2
mRatBN7.2	15	98,037,637 - 98,039,268 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	106,289,890 - 106,291,520	NCBI	Rnor6.0
Rnor_6.0	18	15,440,144 - 15,440,345	NCBI	Rnor6.0
Rnor_5.0	18	15,218,833 - 15,219,034	UniSTS	Rnor5.0
Rnor_5.0	15	109,685,789 - 109,687,419	UniSTS	Rnor5.0
RGSC_v3.4	18	12,501,764 - 12,501,965	UniSTS	RGSC3.4
RGSC_v3.4	15	106,018,567 - 106,020,197	UniSTS	RGSC3.4
Celera	15	96,846,041 - 96,847,671	UniSTS
Celera	18	12,045,749 - 12,045,950	UniSTS
Cytogenetic Map	15	q24	UniSTS

RH126066

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	98,039,208 - 98,039,909 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	106,291,461 - 106,292,161	NCBI	Rnor6.0
Rnor_5.0	15	109,687,360 - 109,688,060	UniSTS	Rnor5.0
RGSC_v3.4	15	106,020,138 - 106,020,838	UniSTS	RGSC3.4
Celera	15	96,847,612 - 96,848,312	UniSTS
Cytogenetic Map	15	q24	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High											5
Medium	3	43	57	41	19	41	8	11	74	35	36	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001075101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_224534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	FQ214398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000014859 ⟹ ENSRNOP00000014859

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	98,005,299 - 98,041,126 (+)	Ensembl
Rnor_6.0 Ensembl	15	106,257,650 - 106,292,112 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000072538 ⟹ ENSRNOP00000066802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	98,005,789 - 98,041,126 (+)	Ensembl
Rnor_6.0 Ensembl	15	106,257,650 - 106,292,112 (+)	Ensembl

RefSeq Acc Id:

NM_001427143 ⟹ NP_001414072

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	104,412,248 - 104,447,985 (+)	NCBI

RefSeq Acc Id:

XM_017599929 ⟹ XP_017455418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	104,397,626 - 104,447,356 (+)	NCBI
mRatBN7.2	15	97,990,755 - 98,041,074 (+)	NCBI
Rnor_6.0	15	106,243,110 - 106,292,172 (+)	NCBI

Sequence:

show sequence

GTCTCCATGGTGACCTCTTTGAGCTGTGAGGTCAGAACTGTGGGGTTAGTGCCATCCTATGACC
GAAGCAAGCATAGGGCTGAGAACAGCCTTGACTACTCAGGGAAAGGAAATTCCTAAGCAAGGAA
CACCGCTCAGAAAGTGTTGTGCCATGCCTCCAAATCCCTGAGAATCAAGTCGAAAAACTGGGAG
CAACAGAAAACACTCGCAATGGCGGCGGCCGCGGCGGAGCAGCAACAGTTCTACCTGCTCCTGG
GAAACCTGCTCAGCCCCGACAATGTGGTCCGGAAACAGGCGGAGGAAACCTATGAGAATATCCC
AGGCCGGTCCAAGATCACATTCCTCCTACAAGCCATCAGAAACACCACAGCCGCTGAGGAGGCT
AGACAAATGGCCGCTGTTCTCCTAAGACGTCTTTTGTCCTCTGCATTTGATGAAGTCTATCCAG
CTCTTCCATCAGATGTCCAGACCGCCATCAAGAGTGAATTGCTGATGATCATTCAGATGGAAAC
ACAGTCCAGCATGAGGAAGAAAATCTGTGATATTGCTGCAGAATTGGCCAGGAATTTAATAGAT
GAGGATGGCAACAACCAGTGGCCTGAAGGTTTGAAGTTCCTCTTTGATTCAGTCAGCTCACAAA
ACATGGGACTCCGGGAAGCTGCCCTTCACATATTTTGGAACTTTCCTGGCATTTTTGGGAACCA
GCAACAGCACTATTTGGACGTCATCAAACGGATGTTAGTTCAGTGTATGCAAGATCAGGAACAT
CCTTCGATCCGGACACTGTCTGCCCGAGCTACAGCTGCCTTTATCCTTGCTAACGAGCACAACG
TCGCTCTGTTCAAACACTTCGCAGACCTGCTGCCTGGGTTCCTACAGGCTGTCAACGACTCATG
CTACCAGAATGATGATTCGGTCCTAAAATCCCTTGTTGAGATTGCAGATACGGTGCCAAAGTAT
TTGCGCCCTCACTTAGAAGCAACTCTACAGTTAAGTCTAAAGTTGTGTGGAGACACTAACCTCA
ATAACATGCAGCGCCAGCTTGCCCTGGAAGTGATCGTGACGCTGTCGGAGACCGCAGCTGCTAT
GCTAAGAAAGCACACCAATATTATCGCACAGACCATTCCTCAGATGTTGGCAATGATGGTTGAC
CTAGAAGAAGACGAGGACTGGGCAAATGCTGATGAGCTAGAAGATGATGATTTCGATAGCAATG
CAGTTGCTGGTGAGAGCGCATTGGACCGAATGGCCTGTGGACTGGGTGGGAAGCTCGTCCTGCC
AATGATTAAGGAACACATTATGCAAATGCTTCAAAACGCTGATTGGAAATACCGGCATGCGGGA
TTAATGGCCTTGTCCGCCATTGGTGAAGGATGCCACCAGCAGATGGAAGGAATTCTCAATGAGA
TTGTAAATTTCGTCTTGCTTTTCCTCCAGGATCCTCACCCAAGAGTCCGGTACGCAGCCTGCAA
TGCCGTGGGTCAGATGGCTACAGATTTCGCACCTGGTTTTCAAAAGAAATTTCATGAGAAGGTG
ATTGCAGCTTTGCTTCAGACCATGGAAGACCAAGGCAACCAACGGGTGCAGGCCCACGCAGCAG
CTGCCCTCATTAACTTCACGGAAGACTGTCCCAAGTCACTGCTTATTCCCTACTTGGATAACTT
GGTGAAGCATCTGCATTCCATTATGGTGCTCAAGCTTCAGGAGCTGATTCAGAAAGGCACCAAG
TTAGTTTTGGAACAAGTTGTGACATCCATTGCATCAGTTGCAGATACTGCAGAAGAAAAGTTTG
TCCCCTACTATGACTTATTCATGCCTTCACTGAAGCACATTGTTGAGAATGCAGTCCAGAAGGA
GCTGAGACTGCTGAGAGGGAAGACCATCGAGTGCATCAGCCTCATTGGTCTGGCCGTCGGGAAG
GAGAAGTTCATGCAGGACGCTTCGGATGTCATGCAGCTGTTGTTGAAGACGCAGACCGACTTCA
ATGACATGGAAGATGACGACCCTCAGATTTCTTACATGATCTCAGCGTGGGCCAGGATGTGCAA
AATCCTTGGGAAAGAATTCCAGCAGTACCTTCCTGTGGTTATGGGGCCACTGATGAAGACCGCT
TCAATTAAGCCTGAAGTGGCCCTTCTAGACACCCAGGACATGGAGAATATGAGTGACGACGATG
GTTGGGAATTTGTAAACCTTGGAGATCAGCAGAGTTTTGGTATTAAAACTGCAGGACTGGAGGA
GAAGTCAACGGCTTGCCAGATGCTGGTTTGTTATGCTAAGGAATTAAAGGAAGGTTTCGTGGAA
TACACTGAACAGGTTGTCAAACTGATGGTCCCACTGCTGAAATTTTATTTCCATGATGGGGTTC
GAGTGGCAGCAGCAGAGTCCATGCCTCTTCTGCTGGAGTGTGCAAGAGTCCGGGGTCCCGAGTA
CCTTACACAGATGTGGCACTTCATGTGCGATGCTCTCATCAAGGCCATTGGCACGGAGCCTGAC
TCAGACGTCCTCTCGGAAATAATGCACTCCTTTGCTAAGTGCATTGAAGTGATGGGAGATGGGT
GTCTCAACAATGAACACTTCGAGGAACTGGGAGGTATACTGAAGGCGAAGCTCGAGGAACATTT
CAAAAATCAAGAGTTGCGGCAAGTTAAAAGACAAGATGAAGACTACGACGAACAGGTTGAAGAG
TCGCTACAAGATGAAGATGATAATGATGTTTATATACTGACTAAAGTCTCAGATATTTTACACT
CAATATTCAGTAGCTACAAAGAAAAGGTGTTGCCGTGGTTTGAACAGCTGCTCCCATTAATTGT
CAACCTGATTTGTCCACATAGACCCTGGCCAGACAGACAATGGGGATTGTGCATCTTCGATGAT
ATCATAGAACACTGTAGTCCAGCTTCATTTAAGTATGCAGAATATTTCTTAAGGCCAATGCTCC
AGTATGTATGTGACAACAGCCCGGAAGTCAGGCAAGCTGCAGCATATGGCCTTGGCGTCATGGC
GCAGTACGGTGGAGATAACTACCGCCCCTTCTGTACAGAAGCACTCCCGCTGCTTGTAAGAGTC
ATTCAGTCTGCAGATTCTAAGACCAAAGAAAATGTCAATGCCACAGAGAACTGCATCTCAGCAG
TGGGAAAGATCATGAAGTTCAAGCCTGACTGCGTGAATGTGGAGGAGGTCTTACCACACTGGCT
GTCGTGGCTCCCCCTACATGAAGATAAAGAAGAAGCTGTCCAGACCTTCAGTTACCTGTGTGAC
CTGATTGAAAGTAATCATCCAATTGTTCTTGGCCCAAATAATACCAATCTACCGAAAATATTCA
GTATAATTGCAGAAGGAGAAATGCATGAGGCCATCAAACATGAAGACCCCTGTGCCAAACGCCT
GGCCAATGTAGTTCGCCAAGTACAGACTTCTGGAGGATTGTGGACTGAATGCATAGCTCAACTC
AGTCCGGAGCAGCAGGCAGCCATACAGGAGCTCCTGAACTCTGCCTGAAGGGCCTTAATACCAC
CTGCCAGAAGACTAACTCCAAATAAACGTTTACCCTTTTGTTTA

hide sequence

RefSeq Acc Id:

XM_039093991 ⟹ XP_038949919

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	104,397,626 - 104,447,356 (+)	NCBI
mRatBN7.2	15	97,990,755 - 98,041,074 (+)	NCBI

RefSeq Acc Id:

XM_063274353 ⟹ XP_063130423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	104,397,690 - 104,447,356 (+)	NCBI

RefSeq Acc Id:

XM_063274354 ⟹ XP_063130424

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	104,398,040 - 104,447,356 (+)	NCBI

RefSeq Acc Id:

XM_063274355 ⟹ XP_063130425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	104,412,664 - 104,447,356 (+)	NCBI

RefSeq Acc Id:

XM_224534 ⟹ XP_224534

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	104,397,690 - 104,447,356 (+)	NCBI
mRatBN7.2	15	97,991,169 - 98,041,074 (+)	NCBI
Rnor_6.0	15	106,243,145 - 106,293,326 (+)	NCBI
Rnor_5.0	15	109,639,020 - 109,689,209 (+)	NCBI
RGSC_v3.4	15	105,944,155 - 106,021,407 (+)	RGD

Sequence:

show sequence

AACTGTGGGGTTAGTGCCATCCTATGACCGAAGCAAGCATAGGGCTGAGAACAGCCTTGACTAC
TGTGGTTCCGGGGAGAAACCTTGCCAGGGCCCATGTGTGAGCACAGCCACTTTTCTTGACCGGG
ATCTTTGCGTCACCAGCAGGGAAAGGAAATTCCTAAGCAAGGAACACCGCTCAGAAAGTGTTGT
GCCATGCCTCCAAATCCCTGAGAATCAAGTCGAAAAACTGGGAGCAACAGAAAACACTGTACGC
GCAATGGCGGCGGCCGCGGCGGAGCAGCAACAGTTCTACCTGCTCCTGGGAAACCTGCTCAGCC
CCGACAATGTGGTCCGGAAACAGGCGGAGGAAACCTATGAGAATATCCCAGGCCGGTCCAAGAT
CACATTCCTCCTACAAGCCATCAGAAACACCACAGCCGCTGAGGAGGCTAGACAAATGGCCGCT
GTTCTCCTAAGACGTCTTTTGTCCTCTGCATTTGATGAAGTCTATCCAGCTCTTCCATCAGATG
TCCAGACCGCCATCAAGAGTGAATTGCTGATGATCATTCAGATGGAAACACAGTCCAGCATGAG
GAAGAAAATCTGTGATATTGCTGCAGAATTGGCCAGGAATTTAATAGATGAGGATGGCAACAAC
CAGTGGCCTGAAGGTTTGAAGTTCCTCTTTGATTCAGTCAGCTCACAAAACATGGGACTCCGGG
AAGCTGCCCTTCACATATTTTGGAACTTTCCTGGCATTTTTGGGAACCAGCAACAGCACTATTT
GGACGTCATCAAACGGATGTTAGTTCAGTGTATGCAAGATCAGGAACATCCTTCGATCCGGACA
CTGTCTGCCCGAGCTACAGCTGCCTTTATCCTTGCTAACGAGCACAACGTCGCTCTGTTCAAAC
ACTTCGCAGACCTGCTGCCTGGGTTCCTACAGGCTGTCAACGACTCATGCTACCAGAATGATGA
TTCGGTCCTAAAATCCCTTGTTGAGATTGCAGATACGGTGCCAAAGTATTTGCGCCCTCACTTA
GAAGCAACTCTACAGTTAAGTCTAAAGTTGTGTGGAGACACTAACCTCAATAACATGCAGCGCC
AGCTTGCCCTGGAAGTGATCGTGACGCTGTCGGAGACCGCAGCTGCTATGCTAAGAAAGCACAC
CAATATTATCGCACAGACCATTCCTCAGATGTTGGCAATGATGGTTGACCTAGAAGAAGACGAG
GACTGGGCAAATGCTGATGAGCTAGAAGATGATGATTTCGATAGCAATGCAGTTGCTGGTGAGA
GCGCATTGGACCGAATGGCCTGTGGACTGGGTGGGAAGCTCGTCCTGCCAATGATTAAGGAACA
CATTATGCAAATGCTTCAAAACGCTGATTGGAAATACCGGCATGCGGGATTAATGGCCTTGTCC
GCCATTGGTGAAGGATGCCACCAGCAGATGGAAGGAATTCTCAATGAGATTGTAAATTTCGTCT
TGCTTTTCCTCCAGGATCCTCACCCAAGAGTCCGGTACGCAGCCTGCAATGCCGTGGGTCAGAT
GGCTACAGATTTCGCACCTGGTTTTCAAAAGAAATTTCATGAGAAGGTGATTGCAGCTTTGCTT
CAGACCATGGAAGACCAAGGCAACCAACGGGTGCAGGCCCACGCAGCAGCTGCCCTCATTAACT
TCACGGAAGACTGTCCCAAGTCACTGCTTATTCCCTACTTGGATAACTTGGTGAAGCATCTGCA
TTCCATTATGGTGCTCAAGCTTCAGGAGCTGATTCAGAAAGGCACCAAGTTAGTTTTGGAACAA
GTTGTGACATCCATTGCATCAGTTGCAGATACTGCAGAAGAAAAGTTTGTCCCCTACTATGACT
TATTCATGCCTTCACTGAAGCACATTGTTGAGAATGCAGTCCAGAAGGAGCTGAGACTGCTGAG
AGGGAAGACCATCGAGTGCATCAGCCTCATTGGTCTGGCCGTCGGGAAGGAGAAGTTCATGCAG
GACGCTTCGGATGTCATGCAGCTGTTGTTGAAGACGCAGACCGACTTCAATGACATGGAAGATG
ACGACCCTCAGATTTCTTACATGATCTCAGCGTGGGCCAGGATGTGCAAAATCCTTGGGAAAGA
ATTCCAGCAGTACCTTCCTGTGGTTATGGGGCCACTGATGAAGACCGCTTCAATTAAGCCTGAA
GTGGCCCTTCTAGACACCCAGGACATGGAGAATATGAGTGACGACGATGGTTGGGAATTTGTAA
ACCTTGGAGATCAGCAGAGTTTTGGTATTAAAACTGCAGGACTGGAGGAGAAGTCAACGGCTTG
CCAGATGCTGGTTTGTTATGCTAAGGAATTAAAGGAAGGTTTCGTGGAATACACTGAACAGGTT
GTCAAACTGATGGTCCCACTGCTGAAATTTTATTTCCATGATGGGGTTCGAGTGGCAGCAGCAG
AGTCCATGCCTCTTCTGCTGGAGTGTGCAAGAGTCCGGGGTCCCGAGTACCTTACACAGATGTG
GCACTTCATGTGCGATGCTCTCATCAAGGCCATTGGCACGGAGCCTGACTCAGACGTCCTCTCG
GAAATAATGCACTCCTTTGCTAAGTGCATTGAAGTGATGGGAGATGGGTGTCTCAACAATGAAC
ACTTCGAGGAACTGGGAGGTATACTGAAGGCGAAGCTCGAGGAACATTTCAAAAATCAAGAGTT
GCGGCAAGTTAAAAGACAAGATGAAGACTACGACGAACAGGTTGAAGAGTCGCTACAAGATGAA
GATGATAATGATGTTTATATACTGACTAAAGTCTCAGATATTTTACACTCAATATTCAGTAGCT
ACAAAGAAAAGGTGTTGCCGTGGTTTGAACAGCTGCTCCCATTAATTGTCAACCTGATTTGTCC
ACATAGACCCTGGCCAGACAGACAATGGGGATTGTGCATCTTCGATGATATCATAGAACACTGT
AGTCCAGCTTCATTTAAGTATGCAGAATATTTCTTAAGGCCAATGCTCCAGTATGTATGTGACA
ACAGCCCGGAAGTCAGGCAAGCTGCAGCATATGGCCTTGGCGTCATGGCGCAGTACGGTGGAGA
TAACTACCGCCCCTTCTGTACAGAAGCACTCCCGCTGCTTGTAAGAGTCATTCAGTCTGCAGAT
TCTAAGACCAAAGAAAATGTCAATGCCACAGAGAACTGCATCTCAGCAGTGGGAAAGATCATGA
AGTTCAAGCCTGACTGCGTGAATGTGGAGGAGGTCTTACCACACTGGCTGTCGTGGCTCCCCCT
ACATGAAGATAAAGAAGAAGCTGTCCAGACCTTCAGTTACCTGTGTGACCTGATTGAAAGTAAT
CATCCAATTGTTCTTGGCCCAAATAATACCAATCTACCGAAAATATTCAGTATAATTGCAGAAG
GAGAAATGCATGAGGCCATCAAACATGAAGACCCCTGTGCCAAACGCCTGGCCAATGTAGTTCG
CCAAGTACAGACTTCTGGAGGATTGTGGACTGAATGCATAGCTCAACTCAGTCCGGAGCAGCAG
GCAGCCATACAGGAGCTCCTGAACTCTGCCTGAAGGGCCTTAATACCACCTGCCAGAAGACTAA
CTCCAAATAAACGTTTACCCTTTTGTTTAGGTTTCTTTGTTTTGTTTTTGAGCAAGAGAGAGCA
GTAGTGTTGTGTGTAGGCCATTCTTCTGGAGCCATGCGCAGGAAAAGCAGTCCTGTGTGCAGAA
TGGACTGCCGTGGATCTCCTCAGACCCGCAGAGGAGGTCCCTGTAAGCCCTGTGGTAGCACTGC
AGAGTATTTTTCTATTGCCGTGTCTGACCCCCGTGAAGGGAAGGGGGAAACAATTCCTTTTCTC
GGTAGACGCAGAAACGTAAGGAGAGCGGCTTTCAGATCAGTTCATCCACATAGATGTGTGTTAC
ACAGACTGGGGGACAACCTAGTGTTCGTTCTGTAAATGGAGTGAGTCTAGGGGGGAGGGGTAGA
AAGAAGCCTTTACCAGCCAACCAGCTGCAAACAACTGCTGACAAACCAGAAGCATGGGGCTGTC
ACGTGATGTCACTCTGGTTCTTTCCCAGAAGGCTTATGCAGTGACTCGGTGTGGAGGCTGTGCC
ACTCCCGGCCCTTGAATGTGAAGTGTCGTTGGCATGTCTGGCAGTCTCCTTCACTCCTCAATAA
ACAGCATTGAAACACAAAGAGGCCTGTGTAGAACTTCAGTGCTGTCTGTCCTTGATTGCTTTCA
TGTTTGATATAAGAGTGATCTGATATTTTTTTAAGGTGAGAGTTCTGGCTCAATGTTTCCCCTC
CACACTCTCTGCAGTGCGGCCTGGGAAGTGTGTGTGCTGTCTTGGAGTTAATTTAAGCTCAGTT
ATAACACAGCTACTCTGTTCATAATTGGTATTCTGAAGGTTTGCAAATTCAACCAGCTTTTCCA
AAGCTCGGATTGTTCTGTTGAGCAAAAAGTTTTGGCTTAGGATTTTCATTGCAGACTGTAATTG
CTCAGAGCCACACGCAGCTTTCGAAGTTTTTAATTTTACAAGTATTATGGCTAAACTTATTTAC
TGAAAATTTCAGTAAAGTGTGTGAAATTTTCTTTATGTATTAACATCAGAGCAGTAACTGACTA
GCTGTTGTTTCCTTTAAGTAATTTTCTAAGGGATCTTAACCGATTTTCTGTTGAAACCTCGGTG
TTAACGTTTTCATAGTTTGTACTAAATTTAACTGTGATACAAAATGAGTTTTATGCATAAATCA
GAATTTAAAATTAAATATTTCTTTCTTTAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001414072	(Get FASTA)	NCBI Sequence Viewer
	XP_017455418	(Get FASTA)	NCBI Sequence Viewer
	XP_038949919	(Get FASTA)	NCBI Sequence Viewer
	XP_063130423	(Get FASTA)	NCBI Sequence Viewer
	XP_063130424	(Get FASTA)	NCBI Sequence Viewer
	XP_063130425	(Get FASTA)	NCBI Sequence Viewer
	XP_224534	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014859.4
	ENSRNOP00000066802.3

RefSeq Acc Id:	XP_224534 ⟸ XM_224534
- Peptide Label:	isoform X2
- UniProtKB:	D4A781 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAAAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGRSKITFLLQAIRNTTAAEEARQMAAV LLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLIDEDGNNQ WPEGLKFLFDSVSSQNMGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTL SARATAAFILANEHNVALFKHFADLLPGFLQAVNDSCYQNDDSVLKSLVEIADTVPKYLRPHLE ATLQLSLKLCGDTNLNNMQRQLALEVIVTLSETAAAMLRKHTNIIAQTIPQMLAMMVDLEEDED WANADELEDDDFDSNAVAGESALDRMACGLGGKLVLPMIKEHIMQMLQNADWKYRHAGLMALSA IGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQ TMEDQGNQRVQAHAAAALINFTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQV VTSIASVADTAEEKFVPYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQD ASDVMQLLLKTQTDFNDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEV ALLDTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVV KLMVPLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESLQDED DNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDIIEHCS PASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADS KTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFSYLCDLIESNH PIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQVQTSGGLWTECIAQLSPEQQA AIQELLNSA hide sequence

RefSeq Acc Id:	XP_017455418 ⟸ XM_017599929
- Peptide Label:	isoform X2
- UniProtKB:	D4A781 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAAAEQQQFYLLLGNLLSPDNVVRKQAEETYENIPGRSKITFLLQAIRNTTAAEEARQMAAV LLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLIDEDGNNQ WPEGLKFLFDSVSSQNMGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTL SARATAAFILANEHNVALFKHFADLLPGFLQAVNDSCYQNDDSVLKSLVEIADTVPKYLRPHLE ATLQLSLKLCGDTNLNNMQRQLALEVIVTLSETAAAMLRKHTNIIAQTIPQMLAMMVDLEEDED WANADELEDDDFDSNAVAGESALDRMACGLGGKLVLPMIKEHIMQMLQNADWKYRHAGLMALSA IGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQ TMEDQGNQRVQAHAAAALINFTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQV VTSIASVADTAEEKFVPYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQD ASDVMQLLLKTQTDFNDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEV ALLDTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVV KLMVPLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESLQDED DNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDIIEHCS PASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADS KTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFSYLCDLIESNH PIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQVQTSGGLWTECIAQLSPEQQA AIQELLNSA hide sequence

RefSeq Acc Id:

ENSRNOP00000066802 ⟸ ENSRNOT00000072538

RefSeq Acc Id:

ENSRNOP00000014859 ⟸ ENSRNOT00000014859

RefSeq Acc Id:	XP_038949919 ⟸ XM_039093991
- Peptide Label:	isoform X2
- UniProtKB:	D4A781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130423 ⟸ XM_063274353
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063130424 ⟸ XM_063274354
- Peptide Label:	isoform X2
- UniProtKB:	D4A781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414072 ⟸ NM_001427143
- UniProtKB:	D4A781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130425 ⟸ XM_063274355
- Peptide Label:	isoform X3
- UniProtKB:	M0RB74 (UniProtKB/TrEMBL)

Protein Domains

Importin N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A781-F1-model_v2	AlphaFold	D4A781	1-1097	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699888

Promoter ID:

EPDNEW_R10401

Type:

initiation region

Name:

Ipo5_1

Description:

importin 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	106,257,629 - 106,257,689	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308715	AgrOrtholog
BioCyc Gene	G2FUF-12384	BioCyc
Ensembl Genes	ENSRNOG00000010989	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014859.9	UniProtKB/TrEMBL
	ENSRNOT00000072538.3	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	HEAT	UniProtKB/TrEMBL
	Importin-beta_N	UniProtKB/TrEMBL
	Importin_beta	UniProtKB/TrEMBL
	Importin_rep_4	UniProtKB/TrEMBL
	Importin_rep_5	UniProtKB/TrEMBL
	Importin_rep_6	UniProtKB/TrEMBL
	TOG	UniProtKB/TrEMBL
KEGG Report	rno:306182	UniProtKB/TrEMBL
NCBI Gene	306182	ENTREZGENE
PANTHER	IMPORTIN-5	UniProtKB/TrEMBL
	PTHR10527	UniProtKB/TrEMBL
Pfam	HEAT	UniProtKB/TrEMBL
	HEAT_EZ	UniProtKB/TrEMBL
	Importin_rep_4	UniProtKB/TrEMBL
	Importin_rep_5	UniProtKB/TrEMBL
	Importin_rep_6	UniProtKB/TrEMBL
PhenoGen	Ipo5	PhenoGen
PROSITE	IMPORTIN_B_NT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010989	RatGTEx
SMART	TOG	UniProtKB/TrEMBL
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	D4A781	ENTREZGENE, UniProtKB/TrEMBL
	M0RB74	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Ipo5	importin 5	LOC685210	similar to RAN binding protein 5	Data merged from RGD:1596486	1643240	APPROVED
2008-05-15	Ipo5	importin 5	Ranbp5	RAN binding protein 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Ranbp5	RAN binding protein 5	Ranbp5_predicted	RAN binding protein 5 (predicted)	'predicted' is removed	2292626	APPROVED
2006-11-20	LOC685210	similar to RAN binding protein 5			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-30	Ranbp5_predicted	RAN binding protein 5 (predicted)	Kpnb3_predicted	karyopherin (importin) beta 3 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-12	Kpnb3_predicted	karyopherin (importin) beta 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD