Plekhm3 (pleckstrin homology domain containing M3) - Rat Genome Database

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Gene: Plekhm3 (pleckstrin homology domain containing M3) Rattus norvegicus
Analyze
Symbol: Plekhm3
Name: pleckstrin homology domain containing M3
RGD ID: 1307151
Description: Predicted to enable metal ion binding activity. Predicted to be involved in myoblast differentiation. Predicted to be located in Golgi apparatus and plasma membrane. Orthologous to human PLEKHM3 (pleckstrin homology domain containing M3); INTERACTS WITH 17alpha-ethynylestradiol; bisphenol A; bromobenzene.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Dapr; differentiation associated protein; LOC316455; pleckstrin homology domain containing, family M, member 1-like; pleckstrin homology domain containing, family M, member 3; pleckstrin homology domain-containing family M member 3; Plekhm1l; RGD1307151; similar to CG6613-PA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8973,659,998 - 73,819,079 (-)NCBIGRCr8
mRatBN7.2966,166,233 - 66,325,332 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl966,166,321 - 66,325,294 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0971,492,665 - 71,651,529 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl971,498,293 - 71,651,512 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0970,935,154 - 71,074,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4963,442,057 - 63,583,879 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1963,589,038 - 63,723,352 (-)NCBI
Celera963,571,202 - 63,730,053 (-)NCBICelera
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19028694  


Genomics

Comparative Map Data
Plekhm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8973,659,998 - 73,819,079 (-)NCBIGRCr8
mRatBN7.2966,166,233 - 66,325,332 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl966,166,321 - 66,325,294 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0971,492,665 - 71,651,529 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl971,498,293 - 71,651,512 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0970,935,154 - 71,074,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4963,442,057 - 63,583,879 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1963,589,038 - 63,723,352 (-)NCBI
Celera963,571,202 - 63,730,053 (-)NCBICelera
Cytogenetic Map9q32NCBI
PLEKHM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382207,821,288 - 208,025,527 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2207,821,288 - 208,025,527 (-)EnsemblGRCh38hg38GRCh38
GRCh372208,686,012 - 208,890,251 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362208,401,288 - 208,574,637 (-)NCBINCBI36Build 36hg18NCBI36
Celera2202,448,087 - 202,652,388 (-)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2200,528,351 - 200,732,867 (-)NCBIHuRef
CHM1_12208,691,961 - 208,896,203 (-)NCBICHM1_1
T2T-CHM13v2.02208,295,515 - 208,499,792 (-)NCBIT2T-CHM13v2.0
Plekhm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,828,279 - 64,995,983 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,825,142 - 64,995,983 (-)EnsemblGRCm39 Ensembl
GRCm38164,789,120 - 64,956,824 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,785,983 - 64,956,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv37164,835,695 - 65,003,398 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36164,723,397 - 64,891,100 (-)NCBIMGSCv36mm8
Celera165,290,516 - 65,457,493 (-)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.76NCBI
Plekhm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554577,065,428 - 7,239,663 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554577,065,443 - 7,239,663 (+)NCBIChiLan1.0ChiLan1.0
PLEKHM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213110,435,802 - 110,643,005 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B110,450,779 - 110,658,005 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B95,061,743 - 95,265,162 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B213,186,504 - 213,389,109 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B213,193,876 - 213,389,109 (-)Ensemblpanpan1.1panPan2
PLEKHM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13716,177,125 - 16,354,641 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3716,182,819 - 16,355,003 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3717,060,085 - 17,238,333 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03716,111,878 - 16,290,825 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3716,116,080 - 16,290,796 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13716,057,489 - 16,235,714 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03716,030,442 - 16,208,662 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03716,039,805 - 16,218,067 (-)NCBIUU_Cfam_GSD_1.0
Plekhm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303164,288,243 - 164,503,017 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366313,960,725 - 4,138,096 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366313,954,774 - 4,138,079 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLEKHM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15110,994,410 - 111,185,324 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115110,989,123 - 111,185,928 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215122,623,253 - 122,671,379 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLEKHM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11093,612,617 - 93,816,814 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1093,616,714 - 93,816,476 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040105,553,005 - 105,758,658 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plekhm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247657,981,903 - 8,166,964 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247657,981,903 - 8,173,599 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plekhm3
698 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:76
Count of miRNA genes:66
Interacting mature miRNAs:71
Transcripts:ENSRNOT00000032782, ENSRNOT00000058075
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat

Markers in Region
D9Got71  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2966,236,419 - 66,236,583 (+)MAPPERmRatBN7.2
Rnor_6.0971,562,658 - 71,562,821NCBIRnor6.0
Rnor_5.0971,004,320 - 71,004,483UniSTSRnor5.0
RGSC_v3.4963,506,542 - 63,506,706RGDRGSC3.4
RGSC_v3.4963,506,543 - 63,506,706UniSTSRGSC3.4
RGSC_v3.1963,653,524 - 63,653,688RGD
RH 3.4 Map9561.7UniSTS
RH 3.4 Map9561.7RGD
RH 2.0 Map9619.5RGD
Cytogenetic Map9q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10 10 19 2 13 10
Low 3 42 47 41 9 41 8 11 55 33 28 1 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006226853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000032782   ⟹   ENSRNOP00000030422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl966,166,321 - 66,325,294 (-)Ensembl
Rnor_6.0 Ensembl971,498,293 - 71,651,512 (-)Ensembl
RefSeq Acc Id: XM_006245080   ⟹   XP_006245142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,819,002 (-)NCBI
mRatBN7.2966,166,233 - 66,325,312 (-)NCBI
Rnor_6.0971,492,665 - 71,651,529 (-)NCBI
Rnor_5.0970,935,154 - 71,074,261 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596815   ⟹   XP_017452304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,819,061 (-)NCBI
mRatBN7.2966,166,233 - 66,325,321 (-)NCBI
Rnor_6.0971,492,665 - 71,651,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596816   ⟹   XP_017452305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,819,078 (-)NCBI
mRatBN7.2966,166,233 - 66,325,332 (-)NCBI
Rnor_6.0971,492,665 - 71,651,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596817   ⟹   XP_017452306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,818,993 (-)NCBI
mRatBN7.2966,166,233 - 66,325,280 (-)NCBI
Rnor_6.0971,492,665 - 71,651,419 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596818   ⟹   XP_017452307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,818,976 (-)NCBI
mRatBN7.2966,166,233 - 66,325,280 (-)NCBI
Rnor_6.0971,492,665 - 71,651,418 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596819   ⟹   XP_017452308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,818,984 (-)NCBI
mRatBN7.2966,166,233 - 66,325,321 (-)NCBI
Rnor_6.0971,492,665 - 71,651,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596820   ⟹   XP_017452309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,818,976 (-)NCBI
mRatBN7.2966,166,233 - 66,325,281 (-)NCBI
Rnor_6.0971,492,665 - 71,651,418 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084589   ⟹   XP_038940517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,666,864 - 73,819,061 (-)NCBI
mRatBN7.2966,173,106 - 66,325,322 (-)NCBI
RefSeq Acc Id: XM_039084591   ⟹   XP_038940519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,819,061 (-)NCBI
mRatBN7.2966,166,233 - 66,325,321 (-)NCBI
RefSeq Acc Id: XM_039084592   ⟹   XP_038940520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,795,818 (-)NCBI
mRatBN7.2966,166,233 - 66,296,991 (-)NCBI
RefSeq Acc Id: XM_039084593   ⟹   XP_038940521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,659,998 - 73,789,899 (-)NCBI
mRatBN7.2966,166,233 - 66,296,129 (-)NCBI
RefSeq Acc Id: XM_063267901   ⟹   XP_063123971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,694,013 - 73,819,079 (-)NCBI
RefSeq Acc Id: XM_063267902   ⟹   XP_063123972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8973,719,337 - 73,819,061 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006245142   ⟸   XM_006245080
- Peptide Label: isoform X1
- UniProtKB: D4A959 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452305   ⟸   XM_017596816
- Peptide Label: isoform X1
- UniProtKB: D4A959 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452308   ⟸   XM_017596819
- Peptide Label: isoform X1
- UniProtKB: D4A959 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452304   ⟸   XM_017596815
- Peptide Label: isoform X1
- UniProtKB: D4A959 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452306   ⟸   XM_017596817
- Peptide Label: isoform X1
- UniProtKB: D4A959 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452309   ⟸   XM_017596820
- Peptide Label: isoform X1
- UniProtKB: D4A959 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452307   ⟸   XM_017596818
- Peptide Label: isoform X1
- UniProtKB: D4A959 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000030422   ⟸   ENSRNOT00000032782
RefSeq Acc Id: XP_038940519   ⟸   XM_039084591
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038940520   ⟸   XM_039084592
- Peptide Label: isoform X5
- UniProtKB: A6IPI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940521   ⟸   XM_039084593
- Peptide Label: isoform X5
- UniProtKB: A6IPI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940517   ⟸   XM_039084589
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123971   ⟸   XM_063267901
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063123972   ⟸   XM_063267902
- Peptide Label: isoform X3
Protein Domains
PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A959-F1-model_v2 AlphaFold D4A959 1-761 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696717
Promoter ID:EPDNEW_R7241
Type:single initiation site
Name:Plekhm3_1
Description:pleckstrin homology domain containing M3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0971,651,457 - 71,651,517EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307151 AgrOrtholog
BioCyc Gene G2FUF-27313 BioCyc
Ensembl Genes ENSRNOG00000023760 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032782.7 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro DUF4206 UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  PLEKHM3_PH_1 UniProtKB/TrEMBL
KEGG Report rno:316455 UniProtKB/TrEMBL
NCBI Gene 316455 ENTREZGENE
PANTHER PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 3 UniProtKB/TrEMBL
Pfam DUF4206 UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
PhenoGen Plekhm3 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023760 RatGTEx
SMART DUF4206 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A6IPI7 ENTREZGENE, UniProtKB/TrEMBL
  D4A959 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Plekhm3  pleckstrin homology domain containing M3  Plekhm3  pleckstrin homology domain containing, family M, member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Plekhm3  pleckstrin homology domain containing, family M, member 3  Plekhm1l  pleckstrin homology domain containing, family M, member 1-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-02 Plekhm1l  pleckstrin homology domain containing, family M, member 1-like  RGD1307151  similar to CG6613-PA   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1307151  similar to CG6613-PA   RGD1307151_predicted  similar to CG6613-PA (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1307151_predicted  similar to CG6613-PA (predicted)  LOC316455_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC316455_predicted  similar to CG6613-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL