Atf7ip (activating transcription factor 7 interacting protein) - Rat Genome Database

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Gene: Atf7ip (activating transcription factor 7 interacting protein) Rattus norvegicus
Analyze
Symbol: Atf7ip
Name: activating transcription factor 7 interacting protein
RGD ID: 1306030
Description: Predicted to enable ATP hydrolysis activity and transcription corepressor activity. Predicted to be involved in protein stabilization and regulation of gene expression. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nuclear body. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human ATF7IP (activating transcription factor 7 interacting protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: activating transcription factor 7-interacting protein 1; LOC312800
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,117,122 - 171,202,871 (+)NCBIGRCr8
mRatBN7.24169,385,872 - 169,471,652 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,385,872 - 169,471,650 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4175,681,092 - 175,766,989 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,462,367 - 171,548,111 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,086,734 - 170,172,633 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,476,998 - 170,563,063 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,518,673 - 170,559,532 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04234,735,376 - 234,821,786 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44173,566,920 - 173,586,494 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14173,804,941 - 173,851,537 (+)NCBI
Celera4157,969,742 - 158,055,453 (+)NCBICelera
Cytogenetic Map4q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-D-glucosamine  (ISO)
bisphenol A  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
inulin  (ISO)
kainic acid  (EXP)
L-methionine  (ISO)
leflunomide  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-ethyl-N-nitrosourea  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resorcinol  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
nuclear body  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)
transcription regulator complex  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10777215   PMID:12665582   PMID:27732843  


Genomics

Comparative Map Data
Atf7ip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,117,122 - 171,202,871 (+)NCBIGRCr8
mRatBN7.24169,385,872 - 169,471,652 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,385,872 - 169,471,650 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4175,681,092 - 175,766,989 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,462,367 - 171,548,111 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,086,734 - 170,172,633 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,476,998 - 170,563,063 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,518,673 - 170,559,532 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04234,735,376 - 234,821,786 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44173,566,920 - 173,586,494 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14173,804,941 - 173,851,537 (+)NCBI
Celera4157,969,742 - 158,055,453 (+)NCBICelera
Cytogenetic Map4q43NCBI
ATF7IP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381214,365,682 - 14,502,930 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1214,365,676 - 14,502,931 (+)EnsemblGRCh38hg38GRCh38
GRCh371214,518,616 - 14,655,864 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,409,878 - 14,542,964 (+)NCBINCBI36Build 36hg18NCBI36
Build 341214,409,877 - 14,542,964NCBI
Celera1219,663,702 - 19,796,793 (+)NCBICelera
Cytogenetic Map12p13.1NCBI
HuRef1214,287,849 - 14,420,834 (+)NCBIHuRef
CHM1_11214,483,626 - 14,616,682 (+)NCBICHM1_1
T2T-CHM13v2.01214,243,190 - 14,380,441 (+)NCBIT2T-CHM13v2.0
Atf7ip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,495,787 - 136,587,848 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,483,165 - 136,587,860 (+)EnsemblGRCm39 Ensembl
GRCm386136,518,789 - 136,610,850 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,506,167 - 136,610,862 (+)EnsemblGRCm38mm10GRCm38
MGSCv376136,467,372 - 136,555,900 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366136,483,047 - 136,571,575 (+)NCBIMGSCv36mm8
Celera6139,516,572 - 139,604,675 (+)NCBICelera
Cytogenetic Map6G1NCBI
Atf7ip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541311,117,223 - 11,261,606 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541311,117,369 - 11,261,787 (+)NCBIChiLan1.0ChiLan1.0
ATF7IP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21019,837,515 - 19,953,671 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11219,834,441 - 19,950,431 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01214,373,084 - 14,504,286 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11214,789,490 - 14,900,632 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1214,789,794 - 14,900,411 (+)Ensemblpanpan1.1panPan2
ATF7IP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12732,082,615 - 32,194,954 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2732,086,675 - 32,177,364 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2714,254,240 - 14,366,422 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02732,391,192 - 32,503,039 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2732,391,199 - 32,503,070 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12732,280,027 - 32,391,910 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02732,238,657 - 32,345,043 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02713,985,629 - 14,097,829 (+)NCBIUU_Cfam_GSD_1.0
Atf7ip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494593,191,596 - 93,299,107 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365872,919,666 - 3,026,837 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365872,922,855 - 3,026,773 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF7IP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl558,022,741 - 58,133,399 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1558,022,734 - 58,149,980 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2561,444,254 - 61,571,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATF7IP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,264,795 - 14,397,062 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,264,706 - 14,392,206 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606920,914,411 - 21,048,992 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atf7ip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475223,470,201 - 23,573,648 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475223,469,237 - 23,605,803 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atf7ip
384 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:112
Interacting mature miRNAs:120
Transcripts:ENSRNOT00000011803, ENSRNOT00000055701
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat

Markers in Region
RH143659  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,431,654 - 169,431,802 (+)MAPPERmRatBN7.2
Rnor_6.04170,523,088 - 170,523,235NCBIRnor6.0
Rnor_5.04234,781,827 - 234,781,974UniSTSRnor5.0
RGSC_v3.44173,570,166 - 173,570,313UniSTSRGSC3.4
Celera4158,015,487 - 158,015,634UniSTS
RH 3.4 Map41029.9UniSTS
Cytogenetic Map4q43UniSTS
BE110602  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,392,704 - 169,392,885 (+)MAPPERmRatBN7.2
Rnor_6.04170,484,156 - 170,484,336NCBIRnor6.0
Rnor_5.04234,742,460 - 234,742,640UniSTSRnor5.0
RGSC_v3.44173,530,845 - 173,531,025UniSTSRGSC3.4
Celera4157,976,569 - 157,976,749UniSTS
RH 3.4 Map41030.8UniSTS
Cytogenetic Map4q43UniSTS
AU049940  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,461,417 - 169,461,659 (+)MAPPERmRatBN7.2
Rnor_6.04170,552,828 - 170,553,066NCBIRnor6.0
Rnor_5.04234,811,551 - 234,811,789UniSTSRnor5.0
RGSC_v3.44173,599,906 - 173,600,144UniSTSRGSC3.4
Celera4158,045,223 - 158,045,461UniSTS
Cytogenetic Map4q43UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 52 36 19 36 8 11 74 35 41 11 8
Low 2 5 5 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003749858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ190019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000011803   ⟹   ENSRNOP00000011803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4169,400,180 - 169,468,247 (+)Ensembl
Rnor_6.0 Ensembl4170,518,673 - 170,559,532 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113634   ⟹   ENSRNOP00000079952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4169,385,872 - 169,471,650 (+)Ensembl
RefSeq Acc Id: NM_001107893   ⟹   NP_001101363
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,117,122 - 171,202,869 (+)NCBI
mRatBN7.24169,385,872 - 169,471,652 (+)NCBI
RefSeq Acc Id: XM_063286153   ⟹   XP_063142223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,128,236 - 171,202,871 (+)NCBI
RefSeq Acc Id: XM_063286154   ⟹   XP_063142224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,133,326 - 171,202,871 (+)NCBI
RefSeq Acc Id: XM_063286155   ⟹   XP_063142225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,152,490 - 171,202,871 (+)NCBI
RefSeq Acc Id: XM_063286156   ⟹   XP_063142226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,128,236 - 171,202,871 (+)NCBI
RefSeq Acc Id: XM_063286157   ⟹   XP_063142227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,133,321 - 171,202,871 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000011803   ⟸   ENSRNOT00000011803
RefSeq Acc Id: NP_001101363   ⟸   NM_001107893
- UniProtKB: A0A8I5ZNS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000079952   ⟸   ENSRNOT00000113634
RefSeq Acc Id: XP_063142223   ⟸   XM_063286153
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063142226   ⟸   XM_063286156
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063142227   ⟸   XM_063286157
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063142224   ⟸   XM_063286154
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142225   ⟸   XM_063286155
- Peptide Label: isoform X3
Protein Domains
Fibronectin type-III

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZS88-F1-model_v2 AlphaFold D3ZS88 1-1309 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306030 AgrOrtholog
BioCyc Gene G2FUF-42601 BioCyc
Ensembl Genes ENSRNOG00000008870 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011803.9 UniProtKB/TrEMBL
  ENSRNOT00000113634 ENTREZGENE
  ENSRNOT00000113634.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro ATF7-int UniProtKB/TrEMBL
  ATF7IP_BD UniProtKB/TrEMBL
  Fibronectin_type3 UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
NCBI Gene 312800 ENTREZGENE
PANTHER ACTIVATING TRANSCRIPTION FACTOR 7-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PTHR23210 UniProtKB/TrEMBL
Pfam ATF7IP_BD UniProtKB/TrEMBL
  fn3_4 UniProtKB/TrEMBL
PhenoGen Atf7ip PhenoGen
PROSITE FN3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008870 RatGTEx
Superfamily-SCOP FN_III-like UniProtKB/TrEMBL
UniProt A0A8I5ZNS2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZS88_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Atf7ip  activating transcription factor 7 interacting protein   Atf7ip_predicted  activating transcription factor 7 interacting protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Atf7ip_predicted  activating transcription factor 7 interacting protein (predicted)      Symbol and Name status set to approved 70820 APPROVED