Ep400 (E1A binding protein p400) - Rat Genome Database

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Gene: Ep400 (E1A binding protein p400) Rattus norvegicus
Analyze
Symbol: Ep400
Name: E1A binding protein p400
RGD ID: 1304733
Description: Enables chromatin binding activity and protein antigen binding activity. Predicted to be involved in DNA repair; positive regulation of double-strand break repair via homologous recombination; and regulation of cell cycle. Predicted to be located in nuclear speck. Predicted to be part of NuA4 histone acetyltransferase complex; Swr1 complex; and nucleosome. Orthologous to human EP400 (E1A binding protein p400); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E1A-binding protein p400; LOC304569
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,551,665 - 51,658,635 (+)NCBIGRCr8
mRatBN7.21245,891,886 - 46,002,523 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,891,916 - 45,998,861 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1247,067,366 - 47,174,430 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,672,836 - 47,779,786 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01246,733,363 - 46,840,311 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01251,948,650 - 52,055,274 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,948,650 - 52,055,271 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01253,687,001 - 53,793,502 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41246,036,453 - 46,143,426 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11245,912,224 - 46,007,557 (+)NCBI
Celera1247,451,324 - 47,557,941 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
5-fluorouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenofibrate  (EXP)
fenthion  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
ifosfamide  (ISO)
indometacin  (ISO)
metformin  (EXP)
methamphetamine  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
ozone  (ISO)
paracetamol  (ISO)
parathion  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MYC recruits the TIP60 histone acetyltransferase complex to chromatin. Frank SR, etal., EMBO Rep 2003 Jun;4(6):575-80.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. p300 family members associate with the carboxyl terminus of simian virus 40 large tumor antigen. Lill NL, etal., J Virol. 1997 Jan;71(1):129-37.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics. Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.
Additional References at PubMed
PMID:12477932   PMID:14966270   PMID:18758164   PMID:24463511  


Genomics

Comparative Map Data
Ep400
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,551,665 - 51,658,635 (+)NCBIGRCr8
mRatBN7.21245,891,886 - 46,002,523 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,891,916 - 45,998,861 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1247,067,366 - 47,174,430 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,672,836 - 47,779,786 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01246,733,363 - 46,840,311 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01251,948,650 - 52,055,274 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,948,650 - 52,055,271 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01253,687,001 - 53,793,502 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41246,036,453 - 46,143,426 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11245,912,224 - 46,007,557 (+)NCBI
Celera1247,451,324 - 47,557,941 (+)NCBICelera
Cytogenetic Map12q16NCBI
EP400
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812131,949,942 - 132,080,460 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12131,949,942 - 132,080,460 (+)EnsemblGRCh38hg38GRCh38
GRCh3712132,434,487 - 132,565,005 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612131,000,461 - 131,130,958 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412131,100,737 - 131,231,235NCBI
Celera12132,044,667 - 132,183,581 (+)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12129,320,249 - 129,451,108 (+)NCBIHuRef
CHM1_112132,255,426 - 132,385,890 (+)NCBICHM1_1
T2T-CHM13v2.012131,997,993 - 132,129,300 (+)NCBIT2T-CHM13v2.0
Ep400
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395110,812,239 - 110,918,583 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5110,812,239 - 110,918,583 (-)EnsemblGRCm39 Ensembl
GRCm385110,664,373 - 110,770,927 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,664,373 - 110,770,717 (-)EnsemblGRCm38mm10GRCm38
MGSCv375111,093,392 - 111,199,736 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365110,904,680 - 111,010,829 (-)NCBIMGSCv36mm8
Celera5107,796,354 - 107,902,745 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.69NCBI
Ep400
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955482641,214 - 746,331 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955482639,316 - 746,331 (-)NCBIChiLan1.0ChiLan1.0
LOC100971447
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210140,044,427 - 140,175,573 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112140,040,944 - 140,172,090 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012129,606,823 - 129,737,179 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112134,038,649 - 134,165,972 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12134,045,829 - 134,163,185 (+)Ensemblpanpan1.1panPan2
EP400
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.126848,028 - 951,135 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl26848,016 - 951,171 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha26891,892 - 994,891 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.026908,308 - 1,012,899 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl26908,316 - 1,002,145 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.126847,101 - 950,037 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.026943,700 - 1,046,650 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.026866,837 - 969,806 (-)NCBIUU_Cfam_GSD_1.0
Ep400
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118122,423,350 - 122,516,897 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366602,212,243 - 2,295,862 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366602,212,063 - 2,297,730 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EP400
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1423,289,244 - 23,396,656 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11423,286,938 - 23,396,316 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21424,748,388 - 24,847,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103239431
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111127,335,371 - 127,461,564 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11127,335,492 - 127,461,796 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037117,487,686 - 117,624,887 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ep400
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474727,709,216 - 27,815,641 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474727,709,215 - 27,815,642 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ep400
322 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:554
Count of miRNA genes:245
Interacting mature miRNAs:320
Transcripts:ENSRNOT00000056735
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat

Markers in Region
D12Rat22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,898,838 - 45,899,022 (+)MAPPERmRatBN7.2
Rnor_6.01251,955,573 - 51,955,754NCBIRnor6.0
Rnor_5.01253,693,924 - 53,694,105UniSTSRnor5.0
RGSC_v3.41246,043,375 - 46,043,557RGDRGSC3.4
RGSC_v3.41246,043,376 - 46,043,557UniSTSRGSC3.4
RGSC_v3.11245,907,502 - 45,907,684RGD
Celera1247,458,247 - 47,458,428UniSTS
RH 3.4 Map12794.1UniSTS
RH 3.4 Map12794.1RGD
RH 2.0 Map12582.4RGD
SHRSP x BN Map1254.0099RGD
Cytogenetic Map12q16UniSTS
RH128316  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,998,650 - 45,998,842 (+)MAPPERmRatBN7.2
Rnor_6.01252,055,061 - 52,055,252NCBIRnor6.0
Rnor_5.01253,793,288 - 53,793,479UniSTSRnor5.0
RGSC_v3.41246,143,216 - 46,143,407UniSTSRGSC3.4
Celera1247,557,731 - 47,557,922UniSTS
RH 3.4 Map12798.8UniSTS
Cytogenetic Map12q16UniSTS
RH143676  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,998,487 - 45,998,614 (+)MAPPERmRatBN7.2
Rnor_6.01252,054,898 - 52,055,024NCBIRnor6.0
Rnor_5.01253,793,125 - 53,793,251UniSTSRnor5.0
RGSC_v3.41246,143,053 - 46,143,179UniSTSRGSC3.4
Celera1247,557,568 - 47,557,694UniSTS
RH 3.4 Map12801.3UniSTS
Cytogenetic Map12q16UniSTS
AU047626  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,931,231 - 45,931,386 (+)MAPPERmRatBN7.2
Rnor_6.01251,987,967 - 51,988,121NCBIRnor6.0
Rnor_5.01253,726,318 - 53,726,472UniSTSRnor5.0
RGSC_v3.41246,075,766 - 46,075,920UniSTSRGSC3.4
Celera1247,490,153 - 47,490,307UniSTS
Cytogenetic Map12q16UniSTS
RH140195  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,998,280 - 45,998,480 (+)MAPPERmRatBN7.2
Rnor_6.01252,054,691 - 52,054,890NCBIRnor6.0
Rnor_5.01253,792,918 - 53,793,117UniSTSRnor5.0
RGSC_v3.41246,142,846 - 46,143,045UniSTSRGSC3.4
Celera1247,557,361 - 47,557,560UniSTS
RH 3.4 Map12801.1UniSTS
Cytogenetic Map12q16UniSTS
RH141236  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,908,680 - 45,908,881 (+)MAPPERmRatBN7.2
Rnor_6.01251,965,412 - 51,965,612NCBIRnor6.0
Rnor_5.01253,703,763 - 53,703,963UniSTSRnor5.0
RGSC_v3.41246,053,215 - 46,053,415UniSTSRGSC3.4
Celera1247,467,641 - 47,467,841UniSTS
Cytogenetic Map12q16UniSTS
Cytogenetic Map4q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 27 40 24 19 24 1 1 74 34 41 11 1
Low 16 17 17 17 7 10 1 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000056735   ⟹   ENSRNOP00000053578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1245,891,916 - 45,998,861 (+)Ensembl
Rnor_6.0 Ensembl1251,948,650 - 52,055,271 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084214   ⟹   ENSRNOP00000068916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1245,892,345 - 45,998,861 (+)Ensembl
Rnor_6.0 Ensembl1251,960,262 - 52,054,108 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095891   ⟹   ENSRNOP00000083470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1245,892,345 - 45,998,861 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118850   ⟹   ENSRNOP00000081678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1245,891,916 - 45,998,861 (+)Ensembl
RefSeq Acc Id: NM_001107149   ⟹   NP_001100619
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,695 - 51,658,634 (+)NCBI
mRatBN7.21245,891,916 - 45,998,861 (+)NCBI
Rnor_6.01251,948,650 - 52,055,271 (+)NCBI
Rnor_5.01253,687,001 - 53,793,502 (+)NCBI
RGSC_v3.41246,036,453 - 46,143,426 (+)RGD
Celera1247,451,324 - 47,557,941 (+)RGD
Sequence:
RefSeq Acc Id: XM_063271366   ⟹   XP_063127436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271367   ⟹   XP_063127437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,552,158 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271368   ⟹   XP_063127438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,552,093 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271369   ⟹   XP_063127439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,675 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271371   ⟹   XP_063127441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,552,163 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271372   ⟹   XP_063127442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271373   ⟹   XP_063127443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271374   ⟹   XP_063127444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271375   ⟹   XP_063127445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271376   ⟹   XP_063127446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,675 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271377   ⟹   XP_063127447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,552,158 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271378   ⟹   XP_063127448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,552,163 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271379   ⟹   XP_063127449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271380   ⟹   XP_063127450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,552,158 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271382   ⟹   XP_063127452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,675 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271383   ⟹   XP_063127453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271384   ⟹   XP_063127454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271385   ⟹   XP_063127455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271386   ⟹   XP_063127456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,574,796 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271387   ⟹   XP_063127457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,574,797 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271388   ⟹   XP_063127458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271389   ⟹   XP_063127459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
RefSeq Acc Id: XM_063271390   ⟹   XP_063127460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,551,665 - 51,658,635 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100619 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127436 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127437 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127438 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127439 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127441 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127442 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127443 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127444 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127445 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127446 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127447 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127448 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127449 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127450 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127452 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127453 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127454 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127455 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127456 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127457 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127458 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127459 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127460 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM14033 (Get FASTA)   NCBI Sequence Viewer  
  EDM14034 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000053578
  ENSRNOP00000053578.2
  ENSRNOP00000068916.1
  ENSRNOP00000081678.1
  ENSRNOP00000083470.1
RefSeq Acc Id: NP_001100619   ⟸   NM_001107149
- UniProtKB: D3ZQ89 (UniProtKB/TrEMBL),   A6J294 (UniProtKB/TrEMBL),   A0A8I6G935 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000053578   ⟸   ENSRNOT00000056735
RefSeq Acc Id: ENSRNOP00000068916   ⟸   ENSRNOT00000084214
RefSeq Acc Id: ENSRNOP00000081678   ⟸   ENSRNOT00000118850
RefSeq Acc Id: ENSRNOP00000083470   ⟸   ENSRNOT00000095891
RefSeq Acc Id: XP_063127436   ⟸   XM_063271366
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127442   ⟸   XM_063271372
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127443   ⟸   XM_063271373
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JU09 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127453   ⟸   XM_063271383
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063127444   ⟸   XM_063271374
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063127445   ⟸   XM_063271375
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063127458   ⟸   XM_063271388
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063127454   ⟸   XM_063271384
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063127459   ⟸   XM_063271389
- Peptide Label: isoform X13
- UniProtKB: A6J294 (UniProtKB/TrEMBL),   D3ZQ89 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127449   ⟸   XM_063271379
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063127455   ⟸   XM_063271385
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063127460   ⟸   XM_063271390
- Peptide Label: isoform X14
- UniProtKB: A0A8I5ZTE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127439   ⟸   XM_063271369
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127446   ⟸   XM_063271376
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063127452   ⟸   XM_063271382
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063127438   ⟸   XM_063271368
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127437   ⟸   XM_063271367
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127447   ⟸   XM_063271377
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063127450   ⟸   XM_063271380
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063127441   ⟸   XM_063271371
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127448   ⟸   XM_063271378
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063127456   ⟸   XM_063271386
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063127457   ⟸   XM_063271387
- Peptide Label: isoform X11
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698735
Promoter ID:EPDNEW_R9259
Type:initiation region
Name:Ep400_1
Description:E1A binding protein p400
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01251,948,678 - 51,948,738EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304733 AgrOrtholog
BioCyc Gene G2FUF-18817 BioCyc
Ensembl Genes ENSRNOG00000037483 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000056735 ENTREZGENE
  ENSRNOT00000056735.4 UniProtKB/TrEMBL
  ENSRNOT00000084214.2 UniProtKB/TrEMBL
  ENSRNOT00000095891.1 UniProtKB/TrEMBL
  ENSRNOT00000118850.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  SWI2/SNF2 ATPases, N-terminal domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7131250 IMAGE-MGC_LOAD
InterPro DEAD-like_N UniProtKB/TrEMBL
  EP400_N UniProtKB/TrEMBL
  Helicase/SANT-assoc_DNA-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
KEGG Report rno:304569 UniProtKB/TrEMBL
MGC_CLONE MGC:94238 IMAGE-MGC_LOAD
NCBI Gene 304569 ENTREZGENE
PANTHER E1A-BINDING PROTEIN P400 UniProtKB/TrEMBL
  E1A-BINDING PROTEIN P400-RELATED UniProtKB/TrEMBL
Pfam EP400_N UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PhenoGen Ep400 PhenoGen
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037483 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JU09 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZTE5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G935 ENTREZGENE, UniProtKB/TrEMBL
  A6J294 ENTREZGENE, UniProtKB/TrEMBL
  A6J295_RAT UniProtKB/TrEMBL
  D3ZQ89 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ep400  E1A binding protein p400  Ep400_predicted  E1A binding protein p400 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ep400_predicted  E1A binding protein p400 (predicted)      Symbol and Name status set to approved 70820 APPROVED