Sgce (sarcoglycan, epsilon) - Rat Genome Database

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Gene: Sgce (sarcoglycan, epsilon) Rattus norvegicus
Analyze
Symbol: Sgce
Name: sarcoglycan, epsilon
RGD ID: 1303201
Description: Involved in kidney development and skeletal muscle tissue development. Predicted to be located in Golgi apparatus and dendrite membrane. Predicted to be part of sarcoglycan complex. Human ortholog(s) of this gene implicated in myoclonic dystonia 11. Orthologous to human SGCE (sarcoglycan epsilon); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: epsilon-sarcoglycan; epsilon-SG
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,738,066 - 33,808,907 (-)NCBIGRCr8
mRatBN7.2432,771,477 - 32,842,238 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,771,477 - 32,842,254 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx437,734,525 - 37,805,283 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,660,647 - 33,731,410 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0432,066,413 - 32,137,152 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0429,726,140 - 29,769,902 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl429,726,146 - 29,778,039 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0429,634,749 - 29,678,914 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera428,302,370 - 28,347,652 (-)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Identification of a prognostic 5-Gene expression signature for gastric cancer. Hou JY, etal., J Cancer Res Clin Oncol. 2017 Apr;143(4):619-629. doi: 10.1007/s00432-016-2324-z. Epub 2016 Dec 29.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Cloning, developmental regulation and neural localization of rat epsilon-sarcoglycan. Xiao J and LeDoux MS, Brain Res Mol Brain Res 2003 Nov 26;119(2):132-43.
Additional References at PubMed
PMID:10481911   PMID:12477932   PMID:17200151   PMID:17993586   PMID:22894000  


Genomics

Comparative Map Data
Sgce
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,738,066 - 33,808,907 (-)NCBIGRCr8
mRatBN7.2432,771,477 - 32,842,238 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,771,477 - 32,842,254 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx437,734,525 - 37,805,283 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,660,647 - 33,731,410 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0432,066,413 - 32,137,152 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0429,726,140 - 29,769,902 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl429,726,146 - 29,778,039 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0429,634,749 - 29,678,914 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera428,302,370 - 28,347,652 (-)NCBICelera
Cytogenetic Map4q21NCBI
SGCE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38794,584,980 - 94,656,133 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl794,524,204 - 94,656,572 (-)EnsemblGRCh38hg38GRCh38
GRCh37794,214,292 - 94,285,445 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36794,052,472 - 94,123,457 (-)NCBINCBI36Build 36hg18NCBI36
Build 34793,859,192 - 93,930,129NCBI
Celera788,912,778 - 88,983,736 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef788,821,910 - 88,892,855 (-)NCBIHuRef
CHM1_1794,144,608 - 94,215,565 (-)NCBICHM1_1
T2T-CHM13v2.0795,820,944 - 95,892,057 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2793,543,689 - 93,614,670 (-)NCBI
Sgce
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,674,350 - 4,747,180 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,674,350 - 4,747,207 (-)EnsemblGRCm39 Ensembl
GRCm3864,674,350 - 4,747,204 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,674,350 - 4,747,207 (-)EnsemblGRCm38mm10GRCm38
MGSCv3764,624,350 - 4,697,204 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3664,624,350 - 4,697,099 (-)NCBIMGSCv36mm8
Celera64,817,452 - 4,890,164 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
Sgce
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543211,310,129 - 11,383,803 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543211,310,488 - 11,383,803 (-)NCBIChiLan1.0ChiLan1.0
SGCE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26112,422,961 - 112,493,987 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17160,687,603 - 160,758,569 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0786,535,215 - 86,606,114 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17100,125,064 - 100,195,529 (-)NCBIpanpan1.1PanPan1.1panPan2
SGCE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11420,052,778 - 20,121,252 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1420,052,776 - 20,121,193 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1419,612,107 - 19,680,546 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01419,868,233 - 19,936,707 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1419,868,231 - 19,936,661 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11420,019,938 - 20,088,381 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01419,754,979 - 19,823,672 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01420,012,325 - 20,081,034 (-)NCBIUU_Cfam_GSD_1.0
Sgce
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511833,342,895 - 33,411,936 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365855,450,888 - 5,522,571 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365855,451,312 - 5,520,391 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGCE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl974,402,717 - 74,473,910 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1974,402,714 - 74,473,904 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2981,600,726 - 81,642,852 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SGCE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12154,385,253 - 54,456,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2154,385,262 - 54,457,302 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604249,866,278 - 49,937,709 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgce
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248131,357,927 - 1,432,381 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248131,361,764 - 1,431,889 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sgce
339 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:172
Count of miRNA genes:116
Interacting mature miRNAs:132
Transcripts:ENSRNOT00000074177
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat

Markers in Region
RH143620  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2432,796,018 - 32,796,188 (+)MAPPERmRatBN7.2
Rnor_6.0429,750,200 - 29,750,369NCBIRnor6.0
Rnor_5.0429,658,604 - 29,658,773UniSTSRnor5.0
Celera428,326,568 - 28,326,737UniSTS
RH 3.4 Map4811.43UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 38 20 12 7 12 2 2 74 34 34 11 2
Low 2 5 37 29 12 29 6 9 1 7 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001002023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY164274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000074177   ⟹   ENSRNOP00000064432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl432,771,477 - 32,842,209 (-)Ensembl
Rnor_6.0 Ensembl429,726,146 - 29,778,039 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100248   ⟹   ENSRNOP00000091800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl432,771,497 - 32,842,199 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103566   ⟹   ENSRNOP00000094451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl432,771,481 - 32,842,189 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108812   ⟹   ENSRNOP00000089367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl432,771,482 - 32,842,254 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119838   ⟹   ENSRNOP00000085107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl432,771,600 - 32,842,172 (-)Ensembl
RefSeq Acc Id: NM_001002023   ⟹   NP_001002023
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,788 (-)NCBI
mRatBN7.2432,771,477 - 32,842,203 (-)NCBI
Rnor_6.0429,726,140 - 29,769,902 (-)NCBI
Rnor_5.0429,634,749 - 29,678,914 (-)NCBI
Celera428,302,370 - 28,347,652 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107988   ⟹   XP_038963916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,820 (-)NCBI
mRatBN7.2432,771,477 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_039107990   ⟹   XP_038963918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,820 (-)NCBI
mRatBN7.2432,771,477 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_039107991   ⟹   XP_038963919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,741,020 - 33,808,820 (-)NCBI
mRatBN7.2432,774,431 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_039107992   ⟹   XP_038963920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,839 (-)NCBI
mRatBN7.2432,771,477 - 32,842,237 (-)NCBI
RefSeq Acc Id: XM_039107993   ⟹   XP_038963921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,845 (-)NCBI
mRatBN7.2432,771,477 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_039107994   ⟹   XP_038963922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,875 (-)NCBI
mRatBN7.2432,771,477 - 32,842,237 (-)NCBI
RefSeq Acc Id: XM_039107995   ⟹   XP_038963923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,907 (-)NCBI
mRatBN7.2432,771,477 - 32,842,237 (-)NCBI
RefSeq Acc Id: XM_039107997   ⟹   XP_038963925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,820 (-)NCBI
mRatBN7.2432,771,477 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_039107998   ⟹   XP_038963926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,820 (-)NCBI
mRatBN7.2432,771,477 - 32,842,238 (-)NCBI
RefSeq Acc Id: XM_063286430   ⟹   XP_063142500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,741,003 - 33,808,835 (-)NCBI
RefSeq Acc Id: XM_063286431   ⟹   XP_063142501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,875 (-)NCBI
RefSeq Acc Id: XM_063286432   ⟹   XP_063142502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,819 (-)NCBI
RefSeq Acc Id: XM_063286433   ⟹   XP_063142503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,738,066 - 33,808,819 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001002023   ⟸   NM_001002023
- UniProtKB: Q6YAT4 (UniProtKB/Swiss-Prot),   A0A8I6GCG9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000064432   ⟸   ENSRNOT00000074177
RefSeq Acc Id: XP_038963926   ⟸   XM_039107998
- Peptide Label: isoform X10
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963925   ⟸   XM_039107997
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963921   ⟸   XM_039107993
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AGU2 (UniProtKB/TrEMBL),   A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963918   ⟸   XM_039107990
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963916   ⟸   XM_039107988
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963923   ⟸   XM_039107995
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963922   ⟸   XM_039107994
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AA37 (UniProtKB/TrEMBL),   A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963920   ⟸   XM_039107992
- Peptide Label: isoform X6
- UniProtKB: M0R4Y0 (UniProtKB/TrEMBL),   A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963919   ⟸   XM_039107991
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GCG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000094451   ⟸   ENSRNOT00000103566
RefSeq Acc Id: ENSRNOP00000091800   ⟸   ENSRNOT00000100248
RefSeq Acc Id: ENSRNOP00000085107   ⟸   ENSRNOT00000119838
RefSeq Acc Id: ENSRNOP00000089367   ⟸   ENSRNOT00000108812
RefSeq Acc Id: XP_063142501   ⟸   XM_063286431
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063142503   ⟸   XM_063286433
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063142502   ⟸   XM_063286432
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AKU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142500   ⟸   XM_063286430
- Peptide Label: isoform X7
Protein Domains
Dystroglycan-type cadherin-like   Sarcoglycan alpha/epsilon N-terminal   Sarcoglycan alpha/epsilon second

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6YAT4-F1-model_v2 AlphaFold Q6YAT4 1-437 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303201 AgrOrtholog
BioCyc Gene G2FUF-45717 BioCyc
Ensembl Genes ENSRNOG00000046905 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074177.3 UniProtKB/TrEMBL
  ENSRNOT00000100248.1 UniProtKB/TrEMBL
  ENSRNOT00000103566.1 UniProtKB/TrEMBL
  ENSRNOT00000108812.1 UniProtKB/TrEMBL
  ENSRNOT00000119838 ENTREZGENE
  ENSRNOT00000119838.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7311584 IMAGE-MGC_LOAD
InterPro Cadg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sarcoglycan_alpha/epsilon UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sarcoglycan_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sarcoglycan_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:432360 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109266 IMAGE-MGC_LOAD
NCBI Gene 432360 ENTREZGENE
PANTHER PTHR10132 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10132:SF17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sarcoglycan_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sarcoglycan_2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sgce PhenoGen
RatGTEx ENSRNOG00000046905 RatGTEx
SMART CADG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AA37 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GCG9 ENTREZGENE, UniProtKB/TrEMBL
  A6IDR9_RAT UniProtKB/TrEMBL
  A6IDS0_RAT UniProtKB/TrEMBL
  A6IDS1_RAT UniProtKB/TrEMBL
  M0R4Y0 ENTREZGENE, UniProtKB/TrEMBL
  Q6YAT4 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-14 Sgce  sarcoglycan, epsilon      Symbol and Name status set to provisional 70820 PROVISIONAL