Sgce (sarcoglycan epsilon) - Rat Genome Database

Name: Sgce
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Sgce (sarcoglycan epsilon) Ictidomys tridecemlineatus

Analyze

Symbol:

Sgce

Name:

sarcoglycan epsilon

RGD ID:

12457475

Description:

INVOLVED IN kidney development (ortholog); skeletal muscle tissue development (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome classic type 1 (ortholog); genetic disease (ortholog); movement disease (ortholog); FOUND IN cell projection (inferred); cytoplasm (inferred); cytoskeleton (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

epsilon-sarcoglycan; sarcoglycan epsilon, transcript variant X1; sarcoglycan epsilon, transcript variant X2; sarcoglycan epsilon, transcript variant X3; sarcoglycan epsilon, transcript variant X4; sarcoglycan epsilon, transcript variant X5; sarcoglycan epsilon, transcript variant X6; sarcoglycan epsilon, transcript variant X7; sarcoglycan epsilon, transcript variant X8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SGCE (sarcoglycan epsilon)	NCBI	Ortholog
Mus musculus (house mouse):	Sgce (sarcoglycan, epsilon)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sgce (sarcoglycan, epsilon)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sgce (sarcoglycan epsilon)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SGCE (sarcoglycan epsilon)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SGCE (sarcoglycan epsilon)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SGCE (sarcoglycan epsilon)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SGCE (sarcoglycan epsilon)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sgce (sarcoglycan epsilon)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	33,342,895 - 33,411,936 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936585	5,450,888 - 5,522,571 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936585	5,451,312 - 5,520,391 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ehlers-Danlos syndrome classic type 1 (ISO)

genetic disease (ISO)

movement disease (ISO)

myoclonic dystonia (ISO)

myoclonic dystonia 11 (ISO)

pleomorphic xanthoastrocytoma (ISO)

stomach cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

kidney development (ISO)

skeletal muscle tissue development (ISO)

Cellular Component

cell projection (IEA)

cytoplasm (IEA)

cytoskeleton (IEA)

dendrite (IEA)

dendrite membrane (IEA)

dystrophin-associated glycoprotein complex (IEA)

Golgi apparatus (IEA)

membrane (IEA)

plasma membrane (IEA)

sarcoglycan complex (IEA)

sarcolemma (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Sgce
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	33,342,895 - 33,411,936 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936585	5,450,888 - 5,522,571 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936585	5,451,312 - 5,520,391 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SGCE
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	94,584,980 - 94,656,133 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	94,524,204 - 94,656,572 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	94,214,292 - 94,285,445 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	94,052,472 - 94,123,457 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	93,859,192 - 93,930,129	NCBI
Celera	7	88,912,778 - 88,983,736 (-)	NCBI		Celera
Cytogenetic Map	7	q21.3	NCBI
HuRef	7	88,821,910 - 88,892,855 (-)	NCBI		HuRef
CHM1_1	7	94,144,608 - 94,215,565 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	95,820,944 - 95,892,057 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	93,543,689 - 93,614,670 (-)	NCBI

Sgce
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	4,674,350 - 4,747,180 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	4,674,350 - 4,747,207 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	4,674,350 - 4,747,204 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	4,674,350 - 4,747,207 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	4,624,350 - 4,697,204 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	4,624,350 - 4,697,099 (-)	NCBI		MGSCv36	mm8
Celera	6	4,817,452 - 4,890,164 (-)	NCBI		Celera
Cytogenetic Map	6	A1	NCBI
cM Map	6	1.81	NCBI

Sgce
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	33,738,066 - 33,808,907 (-)	NCBI		GRCr8
mRatBN7.2	4	32,771,477 - 32,842,238 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	32,771,477 - 32,842,254 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	37,734,525 - 37,805,283 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	33,660,647 - 33,731,410 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	32,066,413 - 32,137,152 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	29,726,140 - 29,769,902 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	29,726,146 - 29,778,039 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	29,634,749 - 29,678,914 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	4	28,302,370 - 28,347,652 (-)	NCBI		Celera
Cytogenetic Map	4	q21	NCBI

Sgce
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	11,310,129 - 11,383,803 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955432	11,310,488 - 11,383,803 (-)	NCBI	ChiLan1.0	ChiLan1.0

SGCE
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	112,422,961 - 112,493,987 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	160,687,603 - 160,758,569 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	86,535,215 - 86,606,114 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	100,125,064 - 100,195,529 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

SGCE
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	20,052,778 - 20,121,252 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	20,052,776 - 20,121,193 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	19,612,107 - 19,680,546 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	19,868,233 - 19,936,707 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	19,868,231 - 19,936,661 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	20,019,938 - 20,088,381 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	19,754,979 - 19,823,672 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	20,012,325 - 20,081,034 (-)	NCBI		UU_Cfam_GSD_1.0

SGCE
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	74,402,717 - 74,473,910 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	74,402,714 - 74,473,904 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	81,600,726 - 81,642,852 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SGCE
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	54,385,253 - 54,456,685 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	54,385,262 - 54,457,302 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	49,866,278 - 49,937,709 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sgce
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624813	1,357,927 - 1,432,381 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624813	1,361,764 - 1,431,889 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005331817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005331819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040291517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000001866 ⟹ ENSSTOP00000001664

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936585	5,451,305 - 5,520,391 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000035400 ⟹ ENSSTOP00000031431

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936585	5,451,423 - 5,520,117 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000038176 ⟹ ENSSTOP00000024392

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936585	5,450,888 - 5,522,571 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000038552 ⟹ ENSSTOP00000030337

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936585	5,450,888 - 5,522,571 (+)	Ensembl

RefSeq Acc Id:

XM_005331817 ⟹ XP_005331874

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	33,342,895 - 33,411,936 (-)	NCBI
SpeTri2.0	NW_004936585	5,451,312 - 5,520,391 (+)	NCBI

Sequence:

show sequence

CGGGATTAGGGAGGGGGTGCAGGGTGCTGAGGCTGAACTGGCCAAGCTGGGAAGAAAGAAGAAA
GGGAGGGGAGGGGAGAATCGAGGACGGCCGGCCTAGCCAGGCCAAGAATGCTATTGCCCTGGTG
GTGGGAGCTGGGAGACCCCTGTGCTTGGACTGGACAGGGTCGGGGGACACGCAGGATGAGCCCC
GCGACCACTGGCACATTCTTGCTGACAGCTTTTTTATTAAGCTGGGCTGATGACATAAATGGAA
CAGTTAACTGGAAGACCAAACAGGCCAACAGTTTTATTATCAGCAGAAAAATGGCTGCTGGGAA
GAAAGATGTGTACACTATCTTCTCGAAGGTGCACTCTGATCGGAATGTGTACCCATCTGCAGGT
GTCCTCTTTGTTCATGTTTTGGAAAGAGAATATTTTAAGGGGGAATTTCCACCTTACCCAAAAC
CTGGGGAGATTAGTAATGATCCCATAACATTCAATACAAATTTAATGGGTTACCCAGATCGACC
TGGATGGCTTCGATATATCCAAAGAACTCCATATAGTGATGGAGTCCTATATGGTTCTCCAACA
GCTGAAAATGTGGGGAAACCAACTATCATTGAGATAACTGCCTACAATAGGCGCACCTTTGAGA
CTGCAAGGCATAATTTGATAATTAATATAATGTCAGCAGAAGACTTCCCGTTGCCGTATCAAGC
AGAATTCTTCATTAAAAATATGAATGTGGAAGAAATGTTGGCCAGTGAGGTTCTTGGAGACTTT
CTGGGGGCAGTAAAGAATGTGTGGCAGCCTGAGCGCCTGAATGCTATAAACATCACGTCGGCCC
TAGACAGGGGTGGCAGGGTGCCGCTTCCCATTAATGACATGAAGGAGGGTGTTTATGTCATGGT
TGGTGCCGATGTCCCATTTTCTTCTTGTTTACGAGAAGTTGAAAATCCACAGAATCAATTGAGA
TGCAGTCAAGAAATGGAGCCTGTAATAACTTGTGATAAAAAATTTCGTACTCAATTTTACATTG
ACTGGTGCAAAATTTCATTGGTTGATAAAACAAAGCAAGTGTCCACTTATCAGGAAGTGATTCG
TGGAGAGGGGATTTTGCCTGATGGTGGAGAGTACAAACCCCCTTCTGATTCTTTGAAAAGCAGA
GACTATTACACGGATTTCCTAATTACACTGGCTGTGCCCTCGGCAGTAGCACTGGTCCTTTTTC
TAATACTTGCTTATATCATGTGCTGCCGACGGGAAGGCGTGGAAAAGAGAAACATGCAAACACC
AGACATCCAATTGGTCCATCATAGTGCTATTCAGAAATCTACAAAGGAGCTACGAGATATGTCC
AAGAACAGAGAGATTGCATGGCCCCTGTCGACGCTTCCTGTGTTTCACCCCGTAACTGGGGAGA
TCATTCCTCCTCTACACACAGACAGCTACGATAGCACGAATATGCCCCTGATGCAAACACAGCA
GAACTTGCCACACCAGACTCAGATTCCCCAACAGCAGACTACAGGTAAATGGTATCCCTGAAGA
AAGAAAACTGACTGAAGCAATGAATTTATAATCACACAGTTATAGCAGTTGCATCTTATTTCTC
TTTTCTTCCAATAATGCATGAGCTTTTCTGGCATATGGTGTGCATGTTGACAGTATTAAGTATG
TACCAAATAATACAATATAACTTTGGTTTTACTAATGTATTTTTTTTGTACTTAAATCATTTTT
GACAATTTGTAAGACATTGATGACTTTATATTTGTTACAATAAAAAGTGATCTTTAAAATAAAC
ATTAATGGAGCCTAA

hide sequence

RefSeq Acc Id:

XM_005331819 ⟹ XP_005331876

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	33,342,895 - 33,411,934 (-)	NCBI
SpeTri2.0	NW_004936585	5,451,312 - 5,520,391 (+)	NCBI

Sequence:

show sequence

CGGGATTAGGGAGGGGGTGCAGGGTGCTGAGGCTGAACTGGCCAAGCTGGGAAGAAAGAAGAAA
GGGAGGGGAGGGGAGAATCGAGGACGGCCGGCCTAGCCAGGCCAAGAATGCTATTGCCCTGGTG
GTGGGAGCTGGGAGACCCCTGTGCTTGGACTGGACAGGGTCGGGGGACACGCAGGATGAGCCCC
GCGACCACTGGCACATTCTTGCTGACAGTGTACACTATCTTCTCGAAGGTGCACTCTGATCGGA
ATGTGTACCCATCTGCAGGTGTCCTCTTTGTTCATGTTTTGGAAAGAGAATATTTTAAGGGGGA
ATTTCCACCTTACCCAAAACCTGGGGAGATTAGTAATGATCCCATAACATTCAATACAAATTTA
ATGGGTTACCCAGATCGACCTGGATGGCTTCGATATATCCAAAGAACTCCATATAGTGATGGAG
TCCTATATGGTTCTCCAACAGCTGAAAATGTGGGGAAACCAACTATCATTGAGATAACTGCCTA
CAATAGGCGCACCTTTGAGACTGCAAGGCATAATTTGATAATTAATATAATGTCAGCAGAAGAC
TTCCCGTTGCCGTATCAAGCAGAATTCTTCATTAAAAATATGAATGTGGAAGAAATGTTGGCCA
GTGAGGTTCTTGGAGACTTTCTGGGGGCAGTAAAGAATGTGTGGCAGCCTGAGCGCCTGAATGC
TATAAACATCACGTCGGCCCTAGACAGGGGTGGCAGGGTGCCGCTTCCCATTAATGACATGAAG
GAGGGTGTTTATGTCATGGTTGGTGCCGATGTCCCATTTTCTTCTTGTTTACGAGAAGTTGAAA
ATCCACAGAATCAATTGAGATGCAGTCAAGAAATGGAGCCTGTAATAACTTGTGATAAAAAATT
TCGTACTCAATTTTACATTGACTGGTGCAAAATTTCATTGGTTGATAAAACAAAGCAAGTGTCC
ACTTATCAGGAAGTGATTCGTGGAGAGGGGATTTTGCCTGATGGTGGAGAGTACAAACCCCCTT
CTGATTCTTTGAAAAGCAGAGACTATTACACGGATTTCCTAATTACACTGGCTGTGCCCTCGGC
AGTAGCACTGGTCCTTTTTCTAATACTTGCTTATATCATGTGCTGCCGACGGGAAGGCGTGGAA
AAGAGAAACATGCAAACACCAGACATCCAATTGGTCCATCATAGTGCTATTCAGAAATCTACAA
AGGAGCTACGAGATATGTCCAAGAACAGAGAGATTGCATGGCCCCTGTCGACGCTTCCTGTGTT
TCACCCCGTAACTGGGGAGATCATTCCTCCTCTACACACAGACAGCTACGATAGCACGAATATG
CCCCTGATGCAAACACAGCAGAACTTGCCACACCAGACTCAGATTCCCCAACAGCAGACTACAG
GTAAATGGTATCCCTGAAGAAAGAAAACTGACTGAAGCAATGAATTTATAATCACACAGTTATA
GCAGTTGCATCTTATTTCTCTTTTCTTCCAATAATGCATGAGCTTTTCTGGCATATGGTGTGCA
TGTTGACAGTATTAAGTATGTACCAAATAATACAATATAACTTTGGTTTTACTAATGTATTTTT
TTTGTACTTAAATCATTTTTGACAATTTGTAAGACATTGATGACTTTATATTTGTTACAATAAA
AAGTGATCTTTAAAATAAACATTAATGGAGCCTAA

hide sequence

RefSeq Acc Id:

XM_021730717 ⟹ XP_021586392

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	33,342,895 - 33,411,935 (-)	NCBI
SpeTri2.0	NW_004936585	5,451,346 - 5,520,391 (+)	NCBI

Sequence:

show sequence

GAACTGGCCAAGCTGGGAAGAAAGAAGAAAGGGAGGGGAGGGGAGAATCGAGGACGGCCGGCCT
AGCCAGGCCAAGAATGCTATTGCCCTGGTGGTGGGAGCTGGGAGACCCCTGTGCTTGGACTGGA
CAGGGTCGGGGGACACGCAGGATGAGCCCCGCGACCACTGGCACATTCTTGCTGACAGCTTTTT
TATTAAGCTGGGCTGATGACATAAATGGAACAGTTAACTGGAAGACCAAACAGGCCAACAGTTT
TATTATCAGCAGAAAAATGGCTGCTGGGAAGAAAGATGTGTACACTATCTTCTCGAAGGTGCAC
TCTGATCGGAATGTGTACCCATCTGCAGGTGTCCTCTTTGTTCATGTTTTGGAAAGAGAATATT
TTAAGGGGGAATTTCCACCTTACCCAAAACCTGGGGAGATTAGTAATGATCCCATAACATTCAA
TACAAATTTAATGGGTTACCCAGATCGACCTGGATGGCTTCGATATATCCAAAGAACTCCATAT
AGTGATGGAGTCCTATATGGTTCTCCAACAGCTGAAAATGTGGGGAAACCAACTATCATTGAGA
TAACTGCCTACAATAGGCGCACCTTTGAGACTGCAAGGCATAATTTGATAATTAATATAATGTC
AGCAGAAGACTTCCCGTTGCCGTATCAAGCAGAATTCTTCATTAAAAATATGAATGTGGAAGAA
ATGTTGGCCAGTGAGGTTCTTGGAGACTTTCTGGGGGCAGTAAAGAATGTGTGGCAGCCTGAGC
GCCTGAATGCTATAAACATCACGTCGGCCCTAGACAGGGGTGGCAGGGTGCCGCTTCCCATTAA
TGACATGAAGGAGGGTGTTTATGTCATGGTTGGTGCCGATGTCCCATTTTCTTCTTGTTTACGA
GAAGTTGAAAATCCACAGAATCAATTGAGATGCAGTCAAGAAATGGAGCCTGTAATAACTTGTG
ATAAAAAATTTCGTACTCAATTTTACATTGACTGGTGCAAAATTTCATTGGTTGATAAAACAAA
GCAAGTGTCCACTTATCAGGAAGTGATTCGTGGAGAGGGGATTTTGCCTGATGGTGGAGAGTAC
AAACCCCCTTCTGATTCTTTGAAAAGCAGAGACTATTACACGGATTTCCTAATTACACTGGCTG
TGCCCTCGGCAGTAGCACTGGTCCTTTTTCTAATACTTGCTTATATCATGTGCTGCCGACGGGA
AGGCGTGGAAAAGAGAAACATGCAAACACCAGACATCCAATTGGTCCATCATAGTGCTATTCAG
AAATCTACAAAGGAGCTACGAGATATGTCCAAGAACAGAGAGATTGCATGGCCCCTGTCGACGC
TTCCTGTGTTTCACCCCGTAACTGGGGAGATCATTCCTCCTCTACACACAGACAGCTACGATAG
CACGAATATGCCCCTGATGCAAACACAGCAGAACTTGCCACACCAGACTCAGATTCCCCAACAG
CAGACTACAGGAGATTTTCGTTTGACAACTTTTCAAAGATTTGAGGTAAATGGTATCCCTGAAG
AAAGAAAACTGACTGAAGCAATGAATTTATAATCACACAGTTATAGCAGTTGCATCTTATTTCT
CTTTTCTTCCAATAATGCATGAGCTTTTCTGGCATATGGTGTGCATGTTGACAGTATTAAGTAT
GTACCAAATAATACAATATAACTTTGGTTTTACTAATGTATTTTTTTTGTACTTAAATCATTTT
TGACAATTTGTAAGACATTGATGACTTTATATTTGTTACAATAAAAAGTGATCTTTAAAATAAA
CATTAATGGAGCCTAA

hide sequence

RefSeq Acc Id:

XM_021730718 ⟹ XP_021586393

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	33,342,895 - 33,411,935 (-)	NCBI
SpeTri2.0	NW_004936585	5,451,346 - 5,520,391 (+)	NCBI

Sequence:

show sequence

GAACTGGCCAAGCTGGGAAGAAAGAAGAAAGGGAGGGGAGGGGAGAATCGAGGACGGCCGGCCT
AGCCAGGCCAAGAATGCTATTGCCCTGGTGGTGGGAGCTGGGAGACCCCTGTGCTTGGACTGGA
CAGGGTCGGGGGACACGCAGGATGAGCCCCGCGACCACTGGCACATTCTTGCTGACAGCTTTTT
TATTAAGCTGGGCTGATGACATAAATGGAACAGTTAACTGGAAGACCAAACAGGCCAACAGTTT
TATTATCAGCAGAAAAATGGCTGCTGGGAAGAAAGATGTGTACACTATCTTCTCGAAGGTGCAC
TCTGATCGGAATGTGTACCCATCTGCAGGTGTCCTCTTTGTTCATGTTTTGGAAAGAGAATATT
TTAAGGGGGAATTTCCACCTTACCCAAAACCTGGGGAGATTAGTAATGATCCCATAACATTCAA
TACAAATTTAATGGGTTACCCAGATCGACCTGGATGGCTTCGATATATCCAAAGAACTCCATAT
AGTGATGGAGTCCTATATGGTTCTCCAACAGCTGAAAATGTGGGGAAACCAACTATCATTGAGA
TAACTGCCTACAATAGGCGCACCTTTGAGACTGCAAGGCATAATTTGATAATTAATATAATGTC
AGCAGAAGACTTCCCGTTGCCGTATCAAGCAGAATTCTTCATTAAAAATATGAATGTGGAAGAA
ATGTTGGCCAGTGAGGTTCTTGGAGACTTTCTGGGGGCAGTAAAGAATGTGTGGCAGCCTGAGC
GCCTGAATGCTATAAACATCACGTCGGCCCTAGACAGGGGTGGCAGGGTGCCGCTTCCCATTAA
TGACATGAAGGAGGGTGTTTATGTCATGGTTGGTGCCGATGTCCCATTTTCTTCTTGTTTACGA
GAAGTTGAAAATCCACAGAATCAATTGAGATGCAGTCAAGAAATGGAGCCTGTAATAACTTGTG
ATAAAAAATTTCGTACTCAATTTTACATTGACTGGTGCAAAATTTCATTGGTTGATAAAACAAA
GCAAGTGTCCACTTATCAGGAAGTGATTCGTGGAGAGGGGATTTTGCCTGATGGTGGAGAGTAC
AAACCCCCTTCTGATTCTTTGAAAAGCAGAGACTATTACACGGATTTCCTAATTACACTGGCTG
TGCCCTCGGCAGTAGCACTGGTCCTTTTTCTAATACTTGCTTATATCATGTGCTGCCGACGGGA
AGGCGTCATCCAATTGGTCCATCATAGTGCTATTCAGAAATCTACAAAGGAGCTACGAGATATG
TCCAAGAACAGAGAGATTGCATGGCCCCTGTCGACGCTTCCTGTGTTTCACCCCGTAACTGGGG
AGATCATTCCTCCTCTACACACAGACAGCTACGATAGCACGAATATGCCCCTGATGCAAACACA
GCAGAACTTGCCACACCAGACTCAGATTCCCCAACAGCAGACTACAGGAGATTTTCGTTTGACA
ACTTTTCAAAGATTTGAGGTAAATGGTATCCCTGAAGAAAGAAAACTGACTGAAGCAATGAATT
TATAATCACACAGTTATAGCAGTTGCATCTTATTTCTCTTTTCTTCCAATAATGCATGAGCTTT
TCTGGCATATGGTGTGCATGTTGACAGTATTAAGTATGTACCAAATAATACAATATAACTTTGG
TTTTACTAATGTATTTTTTTTGTACTTAAATCATTTTTGACAATTTGTAAGACATTGATGACTT
TATATTTGTTACAATAAAAAGTGATCTTTAAAATAAACATTAATGGAGCCTAA

hide sequence

RefSeq Acc Id:

XM_021730719 ⟹ XP_021586394

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	33,342,895 - 33,411,936 (-)	NCBI
SpeTri2.0	NW_004936585	5,451,312 - 5,520,391 (+)	NCBI

Sequence:

show sequence

CGGGATTAGGGAGGGGGTGCAGGGTGCTGAGGCTGAACTGGCCAAGCTGGGAAGAAAGAAGAAA
GGGAGGGGAGGGGAGAATCGAGGACGGCCGGCCTAGCCAGGCCAAGAATGCTATTGCCCTGGTG
GTGGGAGCTGGGAGACCCCTGTGCTTGGACTGGACAGGGTCGGGGGACACGCAGGATGAGCCCC
GCGACCACTGGCACATTCTTGCTGACAGCTTTTTTATTAAGCTGGGCTGATGACATAAATGGAA
CAGTTAACTGGAAGACCAAACAGGCCAACAGTTTTATTATCAGCAGAAAAATGGCTGCTGGGAA
GAAAGATGTGTACACTATCTTCTCGAAGGTGCACTCTGATCGGAATGTGTACCCATCTGCAGGT
GTCCTCTTTGTTCATGTTTTGGAAAGAGAATATTTTAAGGGGGAATTTCCACCTTACCCAAAAC
CTGGGGAGATTAGTAATGATCCCATAACATTCAATACAAATTTAATGGGTTACCCAGATCGACC
TGGATGGCTTCGATATATCCAAAGAACTCCATATAGTGATGGAGTCCTATATGGTTCTCCAACA
GCTGAAAATGTGGGGAAACCAACTATCATTGAGATAACTGCCTACAATAGGCGCACCTTTGAGA
CTGCAAGGCATAATTTGATAATTAATATAATGTCAGCAGAAGACTTCCCGTTGCCGTATCAAGC
AGAATTCTTCATTAAAAATATGAATGTGGAAGAAATGTTGGCCAGTGAGGTTCTTGGAGACTTT
CTGGGGGCAGTAAAGAATGTGTGGCAGCCTGAGCGCCTGAATGCTATAAACATCACGTCGGCCC
TAGACAGGGGTGGCAGGGTGCCGCTTCCCATTAATGACATGAAGGAGGGTGTTTATGTCATGGT
TGGTGCCGATGTCCCATTTTCTTCTTGTTTACGAGAAGTTGAAAATCCACAGAATCAATTGAGA
TGCAGTCAAGAAATGGAGCCTGTAATAACTTGTGATAAAAAATTTCGTACTCAATTTTACATTG
ACTGGTGCAAAATTTCATTGGTTGATAAAACAAAGCAAGTGTCCACTTATCAGGAAGTGATTCG
TGGAGAGGGGATTTTGCCTGATGGTGGAGAGTACAAACCCCCTTCTGATTCTTTGAAAAGCAGA
GACTATTACACGGATTTCCTAATTACACTGGCTGTGCCCTCGGCAGTAGCACTGGTCCTTTTTC
TAATACTTGCTTATATCATGTGCTGCCGACGGGAAGGCGTCATCCAATTGGTCCATCATAGTGC
TATTCAGAAATCTACAAAGGAGCTACGAGATATGTCCAAGAACAGAGAGATTGCATGGCCCCTG
TCGACGCTTCCTGTGTTTCACCCCGTAACTGGGGAGATCATTCCTCCTCTACACACAGACAGCT
ACGATAGCACGAATATGCCCCTGATGCAAACACAGCAGAACTTGCCACACCAGACTCAGATTCC
CCAACAGCAGACTACAGGTAAATGGTATCCCTGAAGAAAGAAAACTGACTGAAGCAATGAATTT
ATAATCACACAGTTATAGCAGTTGCATCTTATTTCTCTTTTCTTCCAATAATGCATGAGCTTTT
CTGGCATATGGTGTGCATGTTGACAGTATTAAGTATGTACCAAATAATACAATATAACTTTGGT
TTTACTAATGTATTTTTTTTGTACTTAAATCATTTTTGACAATTTGTAAGACATTGATGACTTT
ATATTTGTTACAATAAAAAGTGATCTTTAAAATAAACATTAATGGAGCCTAA

hide sequence

RefSeq Acc Id:

XM_021730720 ⟹ XP_021586395

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	33,342,895 - 33,411,935 (-)	NCBI
SpeTri2.0	NW_004936585	5,451,346 - 5,520,391 (+)	NCBI

Sequence:

show sequence

GAACTGGCCAAGCTGGGAAGAAAGAAGAAAGGGAGGGGAGGGGAGAATCGAGGACGGCCGGCCT
AGCCAGGCCAAGAATGCTATTGCCCTGGTGGTGGGAGCTGGGAGACCCCTGTGCTTGGACTGGA
CAGGGTCGGGGGACACGCAGGATGAGCCCCGCGACCACTGGCACATTCTTGCTGACAGTGTACA
CTATCTTCTCGAAGGTGCACTCTGATCGGAATGTGTACCCATCTGCAGGTGTCCTCTTTGTTCA
TGTTTTGGAAAGAGAATATTTTAAGGGGGAATTTCCACCTTACCCAAAACCTGGGGAGATTAGT
AATGATCCCATAACATTCAATACAAATTTAATGGGTTACCCAGATCGACCTGGATGGCTTCGAT
ATATCCAAAGAACTCCATATAGTGATGGAGTCCTATATGGTTCTCCAACAGCTGAAAATGTGGG
GAAACCAACTATCATTGAGATAACTGCCTACAATAGGCGCACCTTTGAGACTGCAAGGCATAAT
TTGATAATTAATATAATGTCAGCAGAAGACTTCCCGTTGCCGTATCAAGCAGAATTCTTCATTA
AAAATATGAATGTGGAAGAAATGTTGGCCAGTGAGGTTCTTGGAGACTTTCTGGGGGCAGTAAA
GAATGTGTGGCAGCCTGAGCGCCTGAATGCTATAAACATCACGTCGGCCCTAGACAGGGGTGGC
AGGGTGCCGCTTCCCATTAATGACATGAAGGAGGGTGTTTATGTCATGGTTGGTGCCGATGTCC
CATTTTCTTCTTGTTTACGAGAAGTTGAAAATCCACAGAATCAATTGAGATGCAGTCAAGAAAT
GGAGCCTGTAATAACTTGTGATAAAAAATTTCGTACTCAATTTTACATTGACTGGTGCAAAATT
TCATTGGTTGATAAAACAAAGCAAGTGTCCACTTATCAGGAAGTGATTCGTGGAGAGGGGATTT
TGCCTGATGGTGGAGAGTACAAACCCCCTTCTGATTCTTTGAAAAGCAGAGACTATTACACGGA
TTTCCTAATTACACTGGCTGTGCCCTCGGCAGTAGCACTGGTCCTTTTTCTAATACTTGCTTAT
ATCATGTGCTGCCGACGGGAAGGCGTGGAAAAGAGAAACATGCAAACACCAGACATCCAATTGG
TCCATCATAGTGCTATTCAGAAATCTACAAAGGAGCTACGAGATATGTCCAAGAACAGAGAGAT
TGCATGGCCCCTGTCGACGCTTCCTGTGTTTCACCCCGTAACTGGGGAGATCATTCCTCCTCTA
CACACAGACAGCTACGATAGCACGAATATGCCCCTGATGCAAACACAGCAGAACTTGCCACACC
AGACTCAGATTCCCCAACAGCAGACTACAGGAGATTTTCGTTTGACAACTTTTCAAAGATTTGA
GGTAAATGGTATCCCTGAAGAAAGAAAACTGACTGAAGCAATGAATTTATAATCACACAGTTAT
AGCAGTTGCATCTTATTTCTCTTTTCTTCCAATAATGCATGAGCTTTTCTGGCATATGGTGTGC
ATGTTGACAGTATTAAGTATGTACCAAATAATACAATATAACTTTGGTTTTACTAATGTATTTT
TTTTGTACTTAAATCATTTTTGACAATTTGTAAGACATTGATGACTTTATATTTGTTACAATAA
AAAGTGATCTTTAAAATAAACATTAATGGAGCCTAA

hide sequence

RefSeq Acc Id:

XM_021730721 ⟹ XP_021586396

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	33,342,895 - 33,411,935 (-)	NCBI
SpeTri2.0	NW_004936585	5,451,312 - 5,520,391 (+)	NCBI

Sequence:

show sequence

CGGGATTAGGGAGGGGGTGCAGGGTGCTGAGGCTGAACTGGCCAAGCTGGGAAGAAAGAAGAAA
GGGAGGGGAGGGGAGAATCGAGGACGGCCGGCCTAGCCAGGCCAAGAATGCTATTGCCCTGGTG
GTGGGAGCTGGGAGACCCCTGTGCTTGGACTGGACAGGGTCGGGGGACACGCAGGATGAGCCCC
GCGACCACTGGCACATTCTTGCTGACAGTGTACACTATCTTCTCGAAGGTGCACTCTGATCGGA
ATGTGTACCCATCTGCAGGTGTCCTCTTTGTTCATGTTTTGGAAAGAGAATATTTTAAGGGGGA
ATTTCCACCTTACCCAAAACCTGGGGAGATTAGTAATGATCCCATAACATTCAATACAAATTTA
ATGGGTTACCCAGATCGACCTGGATGGCTTCGATATATCCAAAGAACTCCATATAGTGATGGAG
TCCTATATGGTTCTCCAACAGCTGAAAATGTGGGGAAACCAACTATCATTGAGATAACTGCCTA
CAATAGGCGCACCTTTGAGACTGCAAGGCATAATTTGATAATTAATATAATGTCAGCAGAAGAC
TTCCCGTTGCCGTATCAAGCAGAATTCTTCATTAAAAATATGAATGTGGAAGAAATGTTGGCCA
GTGAGGTTCTTGGAGACTTTCTGGGGGCAGTAAAGAATGTGTGGCAGCCTGAGCGCCTGAATGC
TATAAACATCACGTCGGCCCTAGACAGGGGTGGCAGGGTGCCGCTTCCCATTAATGACATGAAG
GAGGGTGTTTATGTCATGGTTGGTGCCGATGTCCCATTTTCTTCTTGTTTACGAGAAGTTGAAA
ATCCACAGAATCAATTGAGATGCAGTCAAGAAATGGAGCCTGTAATAACTTGTGATAAAAAATT
TCGTACTCAATTTTACATTGACTGGTGCAAAATTTCATTGGTTGATAAAACAAAGCAAGTGTCC
ACTTATCAGGAAGTGATTCGTGGAGAGGGGATTTTGCCTGATGGTGGAGAGTACAAACCCCCTT
CTGATTCTTTGAAAAGCAGAGACTATTACACGGATTTCCTAATTACACTGGCTGTGCCCTCGGC
AGTAGCACTGGTCCTTTTTCTAATACTTGCTTATATCATGTGCTGCCGACGGGAAGGCGTCATC
CAATTGGTCCATCATAGTGCTATTCAGAAATCTACAAAGGAGCTACGAGATATGTCCAAGAACA
GAGAGATTGCATGGCCCCTGTCGACGCTTCCTGTGTTTCACCCCGTAACTGGGGAGATCATTCC
TCCTCTACACACAGACAGCTACGATAGCACGAATATGCCCCTGATGCAAACACAGCAGAACTTG
CCACACCAGACTCAGATTCCCCAACAGCAGACTACAGGAGATTTTCGTTTGACAACTTTTCAAA
GATTTGAGGTAAATGGTATCCCTGAAGAAAGAAAACTGACTGAAGCAATGAATTTATAATCACA
CAGTTATAGCAGTTGCATCTTATTTCTCTTTTCTTCCAATAATGCATGAGCTTTTCTGGCATAT
GGTGTGCATGTTGACAGTATTAAGTATGTACCAAATAATACAATATAACTTTGGTTTTACTAAT
GTATTTTTTTTGTACTTAAATCATTTTTGACAATTTGTAAGACATTGATGACTTTATATTTGTT
ACAATAAAAAGTGATCTTTAAAATAAACATTAATGGAGCCTAA

hide sequence

RefSeq Acc Id:

XM_021730722 ⟹ XP_021586397

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	33,342,895 - 33,411,934 (-)	NCBI
SpeTri2.0	NW_004936585	5,451,312 - 5,520,391 (+)	NCBI

Sequence:

show sequence

CGGGATTAGGGAGGGGGTGCAGGGTGCTGAGGCTGAACTGGCCAAGCTGGGAAGAAAGAAGAAA
GGGAGGGGAGGGGAGAATCGAGGACGGCCGGCCTAGCCAGGCCAAGAATGCTATTGCCCTGGTG
GTGGGAGCTGGGAGACCCCTGTGCTTGGACTGGACAGGGTCGGGGGACACGCAGGATGAGCCCC
GCGACCACTGGCACATTCTTGCTGACAGTGTACACTATCTTCTCGAAGGTGCACTCTGATCGGA
ATGTGTACCCATCTGCAGGTGTCCTCTTTGTTCATGTTTTGGAAAGAGAATATTTTAAGGGGGA
ATTTCCACCTTACCCAAAACCTGGGGAGATTAGTAATGATCCCATAACATTCAATACAAATTTA
ATGGGTTACCCAGATCGACCTGGATGGCTTCGATATATCCAAAGAACTCCATATAGTGATGGAG
TCCTATATGGTTCTCCAACAGCTGAAAATGTGGGGAAACCAACTATCATTGAGATAACTGCCTA
CAATAGGCGCACCTTTGAGACTGCAAGGCATAATTTGATAATTAATATAATGTCAGCAGAAGAC
TTCCCGTTGCCGTATCAAGCAGAATTCTTCATTAAAAATATGAATGTGGAAGAAATGTTGGCCA
GTGAGGTTCTTGGAGACTTTCTGGGGGCAGTAAAGAATGTGTGGCAGCCTGAGCGCCTGAATGC
TATAAACATCACGTCGGCCCTAGACAGGGGTGGCAGGGTGCCGCTTCCCATTAATGACATGAAG
GAGGGTGTTTATGTCATGGTTGGTGCCGATGTCCCATTTTCTTCTTGTTTACGAGAAGTTGAAA
ATCCACAGAATCAATTGAGATGCAGTCAAGAAATGGAGCCTGTAATAACTTGTGATAAAAAATT
TCGTACTCAATTTTACATTGACTGGTGCAAAATTTCATTGGTTGATAAAACAAAGCAAGTGTCC
ACTTATCAGGAAGTGATTCGTGGAGAGGGGATTTTGCCTGATGGTGGAGAGTACAAACCCCCTT
CTGATTCTTTGAAAAGCAGAGACTATTACACGGATTTCCTAATTACACTGGCTGTGCCCTCGGC
AGTAGCACTGGTCCTTTTTCTAATACTTGCTTATATCATGTGCTGCCGACGGGAAGGCGTCATC
CAATTGGTCCATCATAGTGCTATTCAGAAATCTACAAAGGAGCTACGAGATATGTCCAAGAACA
GAGAGATTGCATGGCCCCTGTCGACGCTTCCTGTGTTTCACCCCGTAACTGGGGAGATCATTCC
TCCTCTACACACAGACAGCTACGATAGCACGAATATGCCCCTGATGCAAACACAGCAGAACTTG
CCACACCAGACTCAGATTCCCCAACAGCAGACTACAGGTAAATGGTATCCCTGAAGAAAGAAAA
CTGACTGAAGCAATGAATTTATAATCACACAGTTATAGCAGTTGCATCTTATTTCTCTTTTCTT
CCAATAATGCATGAGCTTTTCTGGCATATGGTGTGCATGTTGACAGTATTAAGTATGTACCAAA
TAATACAATATAACTTTGGTTTTACTAATGTATTTTTTTTGTACTTAAATCATTTTTGACAATT
TGTAAGACATTGATGACTTTATATTTGTTACAATAAAAAGTGATCTTTAAAATAAACATTAATG
GAGCCTAA

hide sequence

RefSeq Acc Id:

XM_040291517 ⟹ XP_040147451

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	33,342,895 - 33,411,935 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005331874	(Get FASTA)	NCBI Sequence Viewer
	XP_005331876	(Get FASTA)	NCBI Sequence Viewer
	XP_021586392	(Get FASTA)	NCBI Sequence Viewer
	XP_021586393	(Get FASTA)	NCBI Sequence Viewer
	XP_021586394	(Get FASTA)	NCBI Sequence Viewer
	XP_021586395	(Get FASTA)	NCBI Sequence Viewer
	XP_021586396	(Get FASTA)	NCBI Sequence Viewer
	XP_021586397	(Get FASTA)	NCBI Sequence Viewer
	XP_040147451	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001664.3
	ENSSTOP00000024392.1
	ENSSTOP00000030337.1
	ENSSTOP00000031431.1
GenBank Protein	KAG3277609	(Get FASTA)	NCBI Sequence Viewer
	KAG3277610	(Get FASTA)	NCBI Sequence Viewer
	KAG3277611	(Get FASTA)	NCBI Sequence Viewer
	KAG3277612	(Get FASTA)	NCBI Sequence Viewer
	KAG3277613	(Get FASTA)	NCBI Sequence Viewer
	KAG3277614	(Get FASTA)	NCBI Sequence Viewer
	KAG3277615	(Get FASTA)	NCBI Sequence Viewer
	KAG3277616	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005331874 ⟸ XM_005331817
- Peptide Label:	isoform X4
- UniProtKB:	I3LZC9 (UniProtKB/TrEMBL), A0A287DD62 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLPWWWELGDPCAWTGQGRGTRRMSPATTGTFLLTAFLLSWADDINGTVNWKTKQANSFIISR KMAAGKKDVYTIFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDPITFNTNLM GYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDF PLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKE GVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVST YQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEK RNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDSYDSTNMP LMQTQQNLPHQTQIPQQQTTGKWYP hide sequence

RefSeq Acc Id:	XP_005331876 ⟸ XM_005331819
- Peptide Label:	isoform X8
- UniProtKB:	A0A287CSZ0 (UniProtKB/TrEMBL), A0A287DD62 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLPWWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYTIFSKVHSDRNVYPSAGVLFVHVLER EYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTI IEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQ PERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVI TCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLIT LAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPL STLPVFHPVTGEIIPPLHTDSYDSTNMPLMQTQQNLPHQTQIPQQQTTGKWYP hide sequence

RefSeq Acc Id:	XP_021586394 ⟸ XM_021730719
- Peptide Label:	isoform X5
- UniProtKB:	A0A287DD62 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLPWWWELGDPCAWTGQGRGTRRMSPATTGTFLLTAFLLSWADDINGTVNWKTKQANSFIISR KMAAGKKDVYTIFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDPITFNTNLM GYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDF PLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKE GVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVST YQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVIQ LVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDSYDSTNMPLMQTQQNLP HQTQIPQQQTTGKWYP hide sequence

RefSeq Acc Id:	XP_021586396 ⟸ XM_021730721
- Peptide Label:	isoform X7
- UniProtKB:	A0A287D9U8 (UniProtKB/TrEMBL), A0A287DD62 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLPWWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYTIFSKVHSDRNVYPSAGVLFVHVLER EYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTI IEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQ PERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVI TCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLIT LAVPSAVALVLFLILAYIMCCRREGVIQLVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPV TGEIIPPLHTDSYDSTNMPLMQTQQNLPHQTQIPQQQTTGDFRLTTFQRFEVNGIPEERKLTEA MNL hide sequence

RefSeq Acc Id:	XP_021586397 ⟸ XM_021730722
- Peptide Label:	isoform X9
- UniProtKB:	A0A287DD62 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLPWWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYTIFSKVHSDRNVYPSAGVLFVHVLER EYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTI IEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQ PERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVI TCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLIT LAVPSAVALVLFLILAYIMCCRREGVIQLVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPV TGEIIPPLHTDSYDSTNMPLMQTQQNLPHQTQIPQQQTTGKWYP hide sequence

RefSeq Acc Id:

XP_021586392 ⟸ XM_021730717

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLLPWWWELGDPCAWTGQGRGTRRMSPATTGTFLLTAFLLSWADDINGTVNWKTKQANSFIISR
KMAAGKKDVYTIFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDPITFNTNLM
GYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDF
PLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKE
GVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVST
YQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVEK
RNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDSYDSTNMP
LMQTQQNLPHQTQIPQQQTTGDFRLTTFQRFEVNGIPEERKLTEAMNL

hide sequence

RefSeq Acc Id:

XP_021586393 ⟸ XM_021730718

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLLPWWWELGDPCAWTGQGRGTRRMSPATTGTFLLTAFLLSWADDINGTVNWKTKQANSFIISR
KMAAGKKDVYTIFSKVHSDRNVYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDPITFNTNLM
GYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDF
PLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDMKE
GVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVST
YQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVIQ
LVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDSYDSTNMPLMQTQQNLP
HQTQIPQQQTTGDFRLTTFQRFEVNGIPEERKLTEAMNL

hide sequence

RefSeq Acc Id:	XP_021586395 ⟸ XM_021730720
- Peptide Label:	isoform X6
- UniProtKB:	A0A287DD62 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLPWWWELGDPCAWTGQGRGTRRMSPATTGTFLLTVYTIFSKVHSDRNVYPSAGVLFVHVLER EYFKGEFPPYPKPGEISNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPTAENVGKPTI IEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFLGAVKNVWQ PERLNAINITSALDRGGRVPLPINDMKEGVYVMVGADVPFSSCLREVENPQNQLRCSQEMEPVI TCDKKFRTQFYIDWCKISLVDKTKQVSTYQEVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLIT LAVPSAVALVLFLILAYIMCCRREGVEKRNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPL STLPVFHPVTGEIIPPLHTDSYDSTNMPLMQTQQNLPHQTQIPQQQTTGDFRLTTFQRFEVNGI PEERKLTEAMNL hide sequence

RefSeq Acc Id:	XP_040147451 ⟸ XM_040291517
- Peptide Label:	isoform X3
- UniProtKB:	A0A287DD62 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000024392 ⟸ ENSSTOT00000038176

RefSeq Acc Id:

ENSSTOP00000031431 ⟸ ENSSTOT00000035400

RefSeq Acc Id:

ENSSTOP00000001664 ⟸ ENSSTOT00000001866

RefSeq Acc Id:

ENSSTOP00000030337 ⟸ ENSSTOT00000038552

Protein Domains

Dystroglycan-type cadherin-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000001868	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000001866.3	UniProtKB/TrEMBL
	ENSSTOT00000035400.1	UniProtKB/TrEMBL
	ENSSTOT00000038176.1	UniProtKB/TrEMBL
	ENSSTOT00000038552.1	UniProtKB/TrEMBL
InterPro	Cadg	UniProtKB/TrEMBL
	Sarcoglycan_alpha/epsilon	UniProtKB/TrEMBL
	Sarcoglycan_C	UniProtKB/TrEMBL
	Sarcoglycan_N	UniProtKB/TrEMBL
NCBI Gene	Sgce	ENTREZGENE
PANTHER	PTHR10132	UniProtKB/TrEMBL
	PTHR10132:SF17	UniProtKB/TrEMBL
Pfam	Sarcoglycan_2	UniProtKB/TrEMBL
	Sarcoglycan_2_C	UniProtKB/TrEMBL
SMART	CADG	UniProtKB/TrEMBL
UniProt	A0A287CSZ0	ENTREZGENE, UniProtKB/TrEMBL
	A0A287D9U8	ENTREZGENE, UniProtKB/TrEMBL
	A0A287DD62	ENTREZGENE, UniProtKB/TrEMBL
	I3LZC9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM