Ddx24 (DEAD-box helicase 24) - Rat Genome Database

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Gene: Ddx24 (DEAD-box helicase 24) Rattus norvegicus
Analyze
Symbol: Ddx24
Name: DEAD-box helicase 24
RGD ID: 727929
Description: Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human DDX24 (DEAD-box helicase 24); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP-dependent RNA helicase DDX24; ATP-dependent RNA helicase DDX24-like; DEAD (Asp-Glu-Ala-Asp) box helicase 24; DEAD (Asp-Glu-Ala-Asp) box polypeptide 24; LOC100909476
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,329,554 - 128,346,818 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6128,329,554 - 128,349,625 (-)EnsemblGRCr8
mRatBN7.26122,564,767 - 122,582,032 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,564,767 - 122,581,927 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6122,705,614 - 122,722,897 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06123,000,876 - 123,018,159 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,335,418 - 122,352,763 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,302,201 - 127,319,382 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,302,201 - 127,319,362 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl6128,996,616 - 129,001,614 (-)Ensemblrn6Rnor6.0
Rnor_5.06136,522,732 - 136,539,906 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46127,699,436 - 127,716,597 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6120,045,460 - 120,062,621 (-)NCBICelera
RGSC_v3.16127,703,182 - 127,720,344 (-)NCBI
Cytogenetic Map6q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
aflatoxin B1  (ISO)
arachidonic acid  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP)
Bisphenol B  (ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
chloroacetaldehyde  (ISO)
chloroprene  (EXP)
cisplatin  (ISO)
clofibric acid  (EXP)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
elemental selenium  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP,ISO)
fenofibrate  (EXP)
flutamide  (EXP)
FR900359  (ISO)
hexadecanoic acid  (ISO)
lead(0)  (ISO)
metformin  (EXP)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nitrates  (ISO)
Nivalenol  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triacsin C  (ISO)
trichloroethene  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IBA,IEA,ISO)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. DExD/H-box RNA helicases in ribosome biogenesis. Martin R, etal., RNA Biol. 2013 Jan;10(1):4-18. doi: 10.4161/rna.21879. Epub 2012 Aug 24.
4. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:19946888   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Ddx24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,329,554 - 128,346,818 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6128,329,554 - 128,349,625 (-)EnsemblGRCr8
mRatBN7.26122,564,767 - 122,582,032 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,564,767 - 122,581,927 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6122,705,614 - 122,722,897 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06123,000,876 - 123,018,159 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,335,418 - 122,352,763 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,302,201 - 127,319,382 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,302,201 - 127,319,362 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl6128,996,616 - 129,001,614 (-)Ensemblrn6Rnor6.0
Rnor_5.06136,522,732 - 136,539,906 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46127,699,436 - 127,716,597 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6120,045,460 - 120,062,621 (-)NCBICelera
RGSC_v3.16127,703,182 - 127,720,344 (-)NCBI
Cytogenetic Map6q32NCBI
DDX24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381494,048,287 - 94,081,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1494,048,287 - 94,081,215 (-)Ensemblhg38GRCh38
GRCh371494,514,633 - 94,547,548 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361493,587,021 - 93,617,311 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341493,587,021 - 93,617,311NCBI
Celera1474,571,013 - 74,601,331 (-)NCBICelera
Cytogenetic Map14q32.12NCBI
HuRef1474,697,258 - 74,727,325 (-)NCBIHuRef
CHM1_11494,455,281 - 94,485,555 (-)NCBICHM1_1
T2T-CHM13v2.01488,275,602 - 88,308,519 (-)NCBIT2T-CHM13v2.0
Ddx24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912103,374,235 - 103,392,106 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12103,374,241 - 103,392,089 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3812103,407,976 - 103,425,847 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12103,407,982 - 103,425,830 (-)Ensemblmm10GRCm38
MGSCv3712104,646,186 - 104,664,077 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3612103,809,033 - 103,826,830 (-)NCBIMGSCv36mm8
Celera12104,624,733 - 104,642,624 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.92NCBI
Ddx24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543816,100,594 - 16,114,657 (-)Ensembl
ChiLan1.0NW_00495543816,100,345 - 16,116,377 (-)NCBIChiLan1.0ChiLan1.0
DDX24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21595,208,308 - 95,241,312 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11494,424,813 - 94,457,787 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01474,683,068 - 74,713,394 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11494,016,438 - 94,046,635 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1494,016,438 - 94,046,635 (-)EnsemblpanPan2panpan1.1
DDX24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1863,115,740 - 63,136,402 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl863,115,746 - 63,165,905 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha862,692,199 - 62,712,845 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0863,386,682 - 63,407,257 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl863,386,683 - 63,406,313 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1863,064,220 - 63,084,820 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0863,115,645 - 63,136,269 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0863,445,847 - 63,466,503 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ddx24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864011,534,965 - 11,553,604 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367331,913,437 - 1,932,869 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367331,913,439 - 1,932,027 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDX24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7115,328,121 - 115,352,929 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.17115,328,122 - 115,347,355 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27122,186,509 - 122,207,174 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DDX24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12471,808,721 - 71,838,268 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2471,808,995 - 71,838,262 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605359,048,089 - 59,078,195 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ddx24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473410,405,656 - 10,422,101 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ddx24
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17114,704,073 - 114,721,716 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ddx24
87 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:38
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000012256
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat

Markers in Region
RH143701  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26122,580,353 - 122,580,454 (+)MAPPERmRatBN7.2
Rnor_6.06127,317,788 - 127,317,888NCBIRnor6.0
Rnor_5.06136,538,319 - 136,538,419UniSTSRnor5.0
RGSC_v3.46127,715,023 - 127,715,123UniSTSRGSC3.4
Celera6120,061,047 - 120,061,147UniSTS
RH 3.4 Map6836.5UniSTS
Cytogenetic Map6q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012256   ⟹   ENSRNOP00000012256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6128,329,554 - 128,345,338 (-)Ensembl
mRatBN7.2 Ensembl6122,564,768 - 122,581,927 (-)Ensembl
Rnor_6.0 Ensembl6127,302,201 - 127,319,362 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl6128,996,616 - 129,001,614 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl6128,996,616 - 129,001,614 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109592   ⟹   ENSRNOP00000092622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6128,329,554 - 128,349,625 (-)Ensembl
mRatBN7.2 Ensembl6122,564,767 - 122,581,143 (-)Ensembl
RefSeq Acc Id: NM_199119   ⟹   NP_954550
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,715 (-)NCBI
mRatBN7.26122,564,767 - 122,581,928 (-)NCBI
Rnor_6.06127,302,201 - 127,319,362 (-)NCBI
Rnor_5.06136,522,732 - 136,539,906 (-)NCBI
RGSC_v3.46127,699,436 - 127,716,597 (-)RGD
Celera6120,045,460 - 120,062,621 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240483   ⟹   XP_006240545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,754 (-)NCBI
mRatBN7.26122,564,767 - 122,581,931 (-)NCBI
Rnor_6.06127,302,201 - 127,319,310 (-)NCBI
Rnor_5.06136,522,732 - 136,539,906 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240484   ⟹   XP_006240546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,718 (-)NCBI
mRatBN7.26122,564,767 - 122,581,931 (-)NCBI
Rnor_6.06127,302,201 - 127,319,382 (-)NCBI
Rnor_5.06136,522,732 - 136,539,906 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063262243   ⟹   XP_063118313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,732 (-)NCBI
RefSeq Acc Id: XM_063262244   ⟹   XP_063118314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,718 (-)NCBI
RefSeq Acc Id: XM_063262245   ⟹   XP_063118315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,329,554 - 128,346,718 (-)NCBI
RefSeq Acc Id: XM_063262246   ⟹   XP_063118316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,332,595 - 128,346,818 (-)NCBI
RefSeq Acc Id: NP_954550   ⟸   NM_199119
- UniProtKB: Q6VEU8 (UniProtKB/TrEMBL),   A6JEM9 (UniProtKB/TrEMBL),   A0A8I6AFW4 (UniProtKB/TrEMBL),   F7ETB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240546   ⟸   XM_006240484
- Peptide Label: isoform X1
- UniProtKB: Q6VEU8 (UniProtKB/TrEMBL),   A6JEM9 (UniProtKB/TrEMBL),   A0A8I6AFW4 (UniProtKB/TrEMBL),   F7ETB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240545   ⟸   XM_006240483
- Peptide Label: isoform X1
- UniProtKB: Q6VEU8 (UniProtKB/TrEMBL),   A6JEM9 (UniProtKB/TrEMBL),   A0A8I6AFW4 (UniProtKB/TrEMBL),   F7ETB4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012256   ⟸   ENSRNOT00000012256
Ensembl Acc Id: ENSRNOP00000092622   ⟸   ENSRNOT00000109592
RefSeq Acc Id: XP_063118313   ⟸   XM_063262243
- Peptide Label: isoform X1
- UniProtKB: A6JEM9 (UniProtKB/TrEMBL),   F7ETB4 (UniProtKB/TrEMBL),   Q6VEU8 (UniProtKB/TrEMBL),   A0A8I6AFW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118314   ⟸   XM_063262244
- Peptide Label: isoform X1
- UniProtKB: A6JEM9 (UniProtKB/TrEMBL),   F7ETB4 (UniProtKB/TrEMBL),   Q6VEU8 (UniProtKB/TrEMBL),   A0A8I6AFW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118315   ⟸   XM_063262245
- Peptide Label: isoform X1
- UniProtKB: A6JEM9 (UniProtKB/TrEMBL),   F7ETB4 (UniProtKB/TrEMBL),   Q6VEU8 (UniProtKB/TrEMBL),   A0A8I6AFW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118316   ⟸   XM_063262246
- Peptide Label: isoform X2
Protein Domains
DEAD-box RNA helicase Q   Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6VEU8-F1-model_v2 AlphaFold Q6VEU8 1-851 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694793
Promoter ID:EPDNEW_R5317
Type:initiation region
Name:Ddx24_1
Description:DEAD-box helicase 24
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06127,319,368 - 127,319,428EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727929 AgrOrtholog
BioCyc Gene G2FUF-36414 BioCyc
Ensembl Genes ENSRNOG00000009166 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000060974 Ensembl
Ensembl Transcript ENSRNOT00000012256 ENTREZGENE
  ENSRNOT00000012256.5 UniProtKB/TrEMBL
  ENSRNOT00000109592.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7442976 IMAGE-MGC_LOAD
InterPro DEAD-like_N UniProtKB/TrEMBL
  DNA/RNA_helicase_C UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAD/DEAH_N UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RNA-helicase_DEAD-box_CS UniProtKB/TrEMBL
  RNA_helicase_DEAD_Q_motif UniProtKB/TrEMBL
KEGG Report rno:373065 UniProtKB/TrEMBL
MGC_CLONE MGC:114231 IMAGE-MGC_LOAD
NCBI Gene 373065 ENTREZGENE
PANTHER RNA HELICASE UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
PhenoGen Ddx24 PhenoGen
PROSITE DEAD_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  Q_MOTIF UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009166 RatGTEx
  ENSRNOG00000060974 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6AFW4 ENTREZGENE, UniProtKB/TrEMBL
  A6JEM9 ENTREZGENE
  F7ETB4 ENTREZGENE, UniProtKB/TrEMBL
  Q6VEU8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6JEM9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ddx24  DEAD-box helicase 24  LOC100909476  ATP-dependent RNA helicase DDX24-like  Data merged from RGD:6503178 737654 PROVISIONAL
2016-01-13 Ddx24  DEAD-box helicase 24  Ddx24  DEAD (Asp-Glu-Ala-Asp) box helicase 24  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-01 Ddx24  DEAD (Asp-Glu-Ala-Asp) box helicase 24  Ddx24  DEAD (Asp-Glu-Ala-Asp) box polypeptide 24  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100909476  ATP-dependent RNA helicase DDX24-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-07-08 Ddx24  DEAD (Asp-Glu-Ala-Asp) box polypeptide 24      Symbol and Name status set to approved 1299863 APPROVED