Ccdc50 (coiled-coil domain containing 50) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ccdc50 (coiled-coil domain containing 50) Rattus norvegicus
Analyze
Symbol: Ccdc50
Name: coiled-coil domain containing 50
RGD ID: 727841
Description: Predicted to enable ubiquitin protein ligase binding activity. Predicted to act upstream of or within sensory perception of sound. Predicted to be located in microtubule cytoskeleton. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 44 and mantle cell lymphoma. Orthologous to human CCDC50 (coiled-coil domain containing 50); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: c3orf6; C3orf6h; coiled-coil domain-containing protein 50; protein Ymer; putative C3orf6 protein; putative C3orf6 protein homolog; putative C3orf6 protein homolog (human)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81186,837,624 - 86,900,164 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1186,837,624 - 86,899,980 (-)EnsemblGRCr8
mRatBN7.21173,332,798 - 73,395,333 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1173,334,248 - 73,395,150 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1182,171,332 - 82,233,630 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01174,806,362 - 74,868,662 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01173,837,406 - 73,899,757 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01176,742,179 - 76,804,695 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1176,747,865 - 76,804,510 (-)Ensemblrn6Rnor6.0
Rnor_5.01183,919,936 - 83,982,339 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41175,302,647 - 75,360,549 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1172,269,578 - 72,326,461 (-)NCBICelera
RGSC_v3.11175,360,235 - 75,418,138 (-)NCBI
Cytogenetic Map11q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
cytosol  (IEA,ISO)
microtubule cytoskeleton  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Gene knockdown studies revealed CCDC50 as a candidate gene in mantle cell lymphoma and chronic lymphocytic leukemia. Farfsing A, etal., Leukemia. 2009 Nov;23(11):2018-26. doi: 10.1038/leu.2009.144. Epub 2009 Jul 30.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. A mutation in CCDC50, a gene encoding an effector of epidermal growth factor-mediated cell signaling, causes progressive hearing loss. Modamio-Hoybjor S, etal., Am J Hum Genet. 2007 Jun;80(6):1076-89. Epub 2007 Apr 24.
4. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:14527723   PMID:22871113   PMID:23418353  


Genomics

Comparative Map Data
Ccdc50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81186,837,624 - 86,900,164 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1186,837,624 - 86,899,980 (-)EnsemblGRCr8
mRatBN7.21173,332,798 - 73,395,333 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1173,334,248 - 73,395,150 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1182,171,332 - 82,233,630 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01174,806,362 - 74,868,662 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01173,837,406 - 73,899,757 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01176,742,179 - 76,804,695 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1176,747,865 - 76,804,510 (-)Ensemblrn6Rnor6.0
Rnor_5.01183,919,936 - 83,982,339 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41175,302,647 - 75,360,549 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1172,269,578 - 72,326,461 (-)NCBICelera
RGSC_v3.11175,360,235 - 75,418,138 (-)NCBI
Cytogenetic Map11q22NCBI
CCDC50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383191,329,394 - 191,398,659 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3191,329,085 - 191,398,659 (+)Ensemblhg38GRCh38
GRCh373191,047,183 - 191,116,448 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363192,529,568 - 192,592,658 (+)NCBIBuild 36Build 36hg18NCBI36
Celera3189,475,666 - 189,545,223 (+)NCBICelera
Cytogenetic Map3q28NCBI
HuRef3188,446,586 - 188,516,222 (+)NCBIHuRef
CHM1_13191,010,492 - 191,080,115 (+)NCBICHM1_1
T2T-CHM13v2.03194,145,445 - 194,207,797 (+)NCBIT2T-CHM13v2.0
Ccdc50
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391627,205,815 - 27,270,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1627,207,619 - 27,270,968 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381627,387,065 - 27,452,218 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1627,388,869 - 27,452,218 (+)Ensemblmm10GRCm38
MGSCv371627,389,063 - 27,452,304 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361627,304,216 - 27,364,056 (+)NCBIMGSCv36mm8
Celera1627,928,087 - 27,983,434 (+)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1618.98NCBI
Ccdc50
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542016,891,217 - 16,948,008 (-)Ensembl
ChiLan1.0NW_00495542016,884,985 - 16,948,038 (-)NCBIChiLan1.0ChiLan1.0
CCDC50
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22189,268,461 - 189,331,741 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13189,273,295 - 189,342,953 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03188,621,004 - 188,686,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13196,968,825 - 197,038,668 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3196,968,817 - 197,031,790 (+)EnsemblpanPan2panpan1.1
CCDC50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13423,168,594 - 23,243,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3423,168,525 - 23,258,497 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3427,277,632 - 27,334,934 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03423,119,939 - 23,177,337 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3423,101,676 - 23,172,886 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13423,139,896 - 23,197,198 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03423,126,868 - 23,184,645 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03423,369,224 - 23,426,549 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602121,033,853 - 121,101,326 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936900495,547 - 556,316 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936900495,551 - 563,184 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13128,619,230 - 128,690,649 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113128,619,223 - 128,690,964 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213138,015,014 - 138,130,646 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11585,493,894 - 85,563,412 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1585,494,157 - 85,556,827 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604159,143,858 - 59,213,383 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473065,882,486 - 65,949,464 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473065,877,175 - 65,949,099 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccdc50
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1412,843,768 - 12,891,301 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:31
Count of miRNA genes:29
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000002649
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000002649   ⟹   ENSRNOP00000002649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1186,844,993 - 86,883,477 (-)Ensembl
mRatBN7.2 Ensembl1173,339,992 - 73,378,651 (-)Ensembl
Rnor_6.0 Ensembl1176,747,865 - 76,804,510 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094418   ⟹   ENSRNOP00000085752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1186,837,624 - 86,899,980 (-)Ensembl
mRatBN7.2 Ensembl1173,334,248 - 73,395,150 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112380   ⟹   ENSRNOP00000087350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1186,837,624 - 86,899,980 (-)Ensembl
mRatBN7.2 Ensembl1173,337,512 - 73,395,110 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167974   ⟹   ENSRNOP00000111412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1186,837,624 - 86,899,980 (-)Ensembl
RefSeq Acc Id: NM_001401395   ⟹   NP_001388324
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81186,837,624 - 86,899,980 (-)NCBI
mRatBN7.21173,332,798 - 73,395,154 (-)NCBI
RefSeq Acc Id: NM_182736   ⟹   NP_877400
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81186,837,624 - 86,899,980 (-)NCBI
mRatBN7.21173,332,798 - 73,395,154 (-)NCBI
Rnor_6.01176,747,960 - 76,804,455 (-)NCBI
Rnor_5.01183,919,936 - 83,982,339 (+)NCBI
RGSC_v3.41175,302,647 - 75,360,549 (-)RGD
Celera1172,269,578 - 72,326,461 (-)RGD
Sequence:
RefSeq Acc Id: XM_039088104   ⟹   XP_038944032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81186,857,603 - 86,900,164 (-)NCBI
mRatBN7.21173,352,776 - 73,395,333 (-)NCBI
RefSeq Acc Id: XR_001840408
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81186,837,628 - 86,900,152 (-)NCBI
mRatBN7.21173,332,798 - 73,395,328 (-)NCBI
Rnor_6.01176,742,179 - 76,804,695 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010055939
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81186,837,628 - 86,900,140 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001388324 (Get FASTA)   NCBI Sequence Viewer  
  NP_877400 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944032 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAD59241 (Get FASTA)   NCBI Sequence Viewer  
  EDL78127 (Get FASTA)   NCBI Sequence Viewer  
  EDL78128 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000087350
  ENSRNOP00000111412
GenBank Protein Q810U0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_877400   ⟸   NM_182736
- Peptide Label: isoform 2
- UniProtKB: Q810U0 (UniProtKB/Swiss-Prot),   A0A8I6A494 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002649   ⟸   ENSRNOT00000002649
RefSeq Acc Id: XP_038944032   ⟸   XM_039088104
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000085752   ⟸   ENSRNOT00000094418
Ensembl Acc Id: ENSRNOP00000087350   ⟸   ENSRNOT00000112380
RefSeq Acc Id: NP_001388324   ⟸   NM_001401395
- Peptide Label: isoform 1
- UniProtKB: A0A8I6GF21 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111412   ⟸   ENSRNOT00000167974
Protein Domains
Coiled-coil

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q810U0-F1-model_v2 AlphaFold Q810U0 1-305 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698234
Promoter ID:EPDNEW_R8759
Type:initiation region
Name:Ccdc50_1
Description:coiled-coil domain containing 50
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01176,804,478 - 76,804,538EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727841 AgrOrtholog
BioCyc Gene G2FUF-20955 BioCyc
Ensembl Genes ENSRNOG00000001930 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000112380 ENTREZGENE
  ENSRNOT00000167974 ENTREZGENE
InterPro CCDC50 UniProtKB/Swiss-Prot
  CCDC50_N UniProtKB/Swiss-Prot
KEGG Report rno:288022 UniProtKB/Swiss-Prot
NCBI Gene 288022 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 50 UniProtKB/Swiss-Prot
  PTHR22115 UniProtKB/Swiss-Prot
Pfam CCDC50_N UniProtKB/Swiss-Prot
PhenoGen Ccdc50 PhenoGen
RatGTEx ENSRNOG00000001930 RatGTEx
UniProt A0A8I6A494 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GF21 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q0J1_RAT UniProtKB/TrEMBL
  CCD50_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-03 Ccdc50  coiled-coil domain containing 50  C3orf6h  putative C3orf6 protein homolog (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 c3orf6h  putative C3orf6 protein homolog (human)  c3orf6  putative C3orf6 protein  Symbol and Name updated 1299863 APPROVED