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Gene: Ssrp1 (structure specific recognition protein 1) Rattus norvegicus

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Symbol:

Ssrp1

Name:

structure specific recognition protein 1

RGD ID:

621143

Description:

Predicted to enable histone binding activity and nucleosome binding activity. Predicted to be involved in nucleosome disassembly and regulation of chromatin organization. Predicted to be located in nucleus. Predicted to be part of FACT complex. Orthologous to human SSRP1 (structure specific recognition protein 1); PARTICIPATES IN cisplatin drug pathway; histone modification pathway; RNA polymerase I transcription pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; allethrin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

facilitates chromatin transcription complex subunit SSRP1; FACT complex subunit SSRP1; MGC94298; recombination signal sequence recognition protein 1; structure-specific recognition protein 1; T160

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SSRP1 (structure specific recognition protein 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Ssrp1 (structure specific recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ssrp1 (structure specific recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SSRP1 (structure specific recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SSRP1 (structure specific recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ssrp1 (structure specific recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SSRP1 (structure specific recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SSRP1 (structure specific recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ssrp1 (structure specific recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ssrp1 (structure specific recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SSRP1 (structure specific recognition protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ssrp1 (structure specific recognition protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ssrp1b (structure specific recognition protein 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ssrp1a (structure specific recognition protein 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hmg-3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	POB3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ssrp	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hmg-4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ssrp1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ssrp1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	90,531,024 - 90,541,132 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	90,530,829 - 90,541,129 (+)	Ensembl				GRCr8
mRatBN7.2	3	70,124,371 - 70,134,481 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	70,118,655 - 70,134,482 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	73,506,551 - 73,516,201 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	82,105,226 - 82,114,876 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	79,863,689 - 79,873,336 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	72,447,516 - 72,457,621 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	72,447,537 - 72,457,649 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	78,958,172 - 78,968,279 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	68,272,947 - 68,282,596 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	69,475,838 - 69,485,487 (+)	NCBI		Celera
RGSC_v3.1	3	68,171,697 - 68,178,968 (+)	NCBI
Cytogenetic Map	3	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

17alpha-ethynylestradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,6-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

allethrin (EXP)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

bortezomib (ISO)

Butylbenzyl phthalate (EXP)

cadmium acetate (EXP)

cadmium dichloride (EXP,ISO)

carbamazepine (ISO)

chlorpyrifos (ISO)

choline (ISO)

chromium(6+) (ISO)

cobalt dichloride (ISO)

coumestrol (ISO)

cyclophosphamide (EXP)

cyhalothrin (EXP)

cypermethrin (EXP)

decabromodiphenyl ether (ISO)

deoxynivalenol (ISO)

dibutyl phthalate (ISO)

dichlorine (EXP)

doxorubicin (ISO)

elemental selenium (ISO)

Enterolactone (ISO)

fenvalerate (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

imiquimod (ISO)

iron(III) nitrilotriacetate (EXP)

ivermectin (ISO)

L-methionine (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nitrates (ISO)

oxaliplatin (EXP)

ozone (EXP,ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

potassium chromate (ISO)

propiconazole (ISO)

pyrethrins (EXP)

resveratrol (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

DNA damage response (IEA)

DNA repair (IEA)

DNA replication (IEA)

DNA-templated transcription (IEA)

nucleosome disassembly (IEA,ISO)

regulation of chromatin organization (IBA,IEA,ISO)

Cellular Component

chromosome (IEA)

FACT complex (IBA)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

Molecular Function

chromatin binding (IEA,ISO)

DNA binding (IEA)

histone binding (IBA)

nucleosome binding (IBA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cisplatin drug pathway (ISO)

histone modification pathway (ISO)

RNA polymerase I transcription pathway (ISO)

RNA polymerase II transcription elongation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Histone chaperones in nucleosome assembly and human disease.	Burgess RJ and Zhang Z, Nat Struct Mol Biol. 2013 Jan;20(1):14-22. doi: 10.1038/nsmb.2461.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Control of transcriptional elongation.	Kwak H and Lis JT, Annu Rev Genet. 2013;47:483-508. doi: 10.1146/annurev-genet-110711-155440. Epub 2013 Sep 11.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation
9.	Inhibition of transcription by platinum antitumor compounds.	Todd RC and Lippard SJ, Metallomics. 2009;1(4):280-91. doi: 10.1039/b907567d.
10.	Rat and chick cDNA clones encoding HMG-like proteins.	Wang L, etal., Nucleic Acids Res 1993 Mar 25;21(6):1493.
11.	The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization.	Winkler DD and Luger K, J Biol Chem. 2011 May 27;286(21):18369-74. doi: 10.1074/jbc.R110.180778. Epub 2011 Mar 24.

Additional References at PubMed

PMID:10336466	PMID:12477932	PMID:15489334	PMID:22252316	PMID:22658674	PMID:22681889	PMID:27467129

Genomics

Comparative Map Data

Ssrp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	90,531,024 - 90,541,132 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	90,530,829 - 90,541,129 (+)	Ensembl				GRCr8
mRatBN7.2	3	70,124,371 - 70,134,481 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	70,118,655 - 70,134,482 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	73,506,551 - 73,516,201 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	82,105,226 - 82,114,876 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	79,863,689 - 79,873,336 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	72,447,516 - 72,457,621 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	72,447,537 - 72,457,649 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	78,958,172 - 78,968,279 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	68,272,947 - 68,282,596 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	69,475,838 - 69,485,487 (+)	NCBI		Celera
RGSC_v3.1	3	68,171,697 - 68,178,968 (+)	NCBI
Cytogenetic Map	3	q24	NCBI

SSRP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	57,325,988 - 57,335,892 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	57,325,982 - 57,335,892 (-)	Ensembl			hg38	GRCh38
GRCh37	11	57,093,462 - 57,103,366 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	56,850,035 - 56,859,927 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	56,850,035 - 56,859,927	NCBI
Celera	11	54,452,485 - 54,462,377 (-)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	53,442,342 - 53,452,234 (-)	NCBI		HuRef
CHM1_1	11	56,959,569 - 56,969,461 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	57,275,479 - 57,285,383 (-)	NCBI		T2T-CHM13v2.0

Ssrp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	84,867,519 - 84,877,453 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	84,867,578 - 84,877,453 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	85,037,120 - 85,047,114 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	85,037,234 - 85,047,109 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	84,877,358 - 84,887,268 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	84,838,111 - 84,847,948 (+)	NCBI		MGSCv36	mm8
Celera	2	86,635,959 - 86,645,881 (+)	NCBI		Celera
Cytogenetic Map	2	D	NCBI
cM Map	2	49.45	NCBI

Ssrp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955511	2,378,652 - 2,388,198 (-)	Ensembl
ChiLan1.0	NW_004955511	2,378,720 - 2,388,201 (-)	NCBI	ChiLan1.0	ChiLan1.0

SSRP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	58,483,009 - 58,493,021 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	59,499,965 - 59,509,977 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	52,567,420 - 52,577,324 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	160,058,404 - 160,068,177 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	160,057,285 - 160,068,177 (-)	Ensembl			panPan2	panpan1.1

SSRP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	38,802,673 - 38,812,134 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	38,802,619 - 38,812,131 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	38,347,858 - 38,357,705 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	39,483,634 - 39,493,482 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	39,483,620 - 39,493,473 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	39,066,225 - 39,076,070 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	38,639,716 - 38,649,560 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	39,270,489 - 39,280,337 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ssrp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	15,034,264 - 15,043,808 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	5,148,050 - 5,157,667 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	5,148,108 - 5,157,630 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SSRP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	13,619,716 - 13,629,227 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	13,619,666 - 13,629,233 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	13,382,515 - 13,392,033 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SSRP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	15,907,874 - 15,918,376 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	15,908,495 - 15,918,596 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	113,251,412 - 113,261,626 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ssrp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624864	3,253,639 - 3,262,105 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ssrp1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	62,407,494 - 62,417,629 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ssrp1
38 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	278
Count of miRNA genes:	164
Interacting mature miRNAs:	190
Transcripts:	ENSRNOT00000012022
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	73592611	110333156	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	53651826	98651826	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	48876619	93876619	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	48876619	93876619	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	47904172	92904172	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	48657744	93657744	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	48657744	93657744	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	50766145	95766145	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	50766145	95766145	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	48657744	93657744	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	48657744	93657744	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	48657744	93657744	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

RH129830

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	70,134,259 - 70,134,478 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	72,457,397 - 72,457,615	NCBI	Rnor6.0
Rnor_5.0	3	78,968,055 - 78,968,273	UniSTS	Rnor5.0
RGSC_v3.4	3	68,282,375 - 68,282,593	UniSTS	RGSC3.4
Celera	3	69,485,266 - 69,485,484	UniSTS
Cytogenetic Map	3	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L08814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012022 ⟹ ENSRNOP00000012022

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	90,530,829 - 90,541,129 (+)	Ensembl
mRatBN7.2 Ensembl	3	70,118,655 - 70,134,482 (+)	Ensembl
Rnor_6.0 Ensembl	3	72,447,969 - 72,457,615 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091901 ⟹ ENSRNOP00000073084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	90,531,180 - 90,541,129 (+)	Ensembl
mRatBN7.2 Ensembl	3	70,118,655 - 70,134,482 (+)	Ensembl
Rnor_6.0 Ensembl	3	72,447,537 - 72,457,649 (+)	Ensembl

RefSeq Acc Id:

NM_031121 ⟹ NP_112383

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	90,531,483 - 90,541,132 (+)	NCBI
mRatBN7.2	3	70,124,832 - 70,134,481 (+)	NCBI
Rnor_6.0	3	72,447,969 - 72,457,618 (+)	NCBI
Rnor_5.0	3	78,958,172 - 78,968,279 (+)	NCBI
RGSC_v3.4	3	68,272,947 - 68,282,596 (+)	RGD
Celera	3	69,475,838 - 69,485,487 (+)	RGD

Sequence:

show sequence

GGCCTGGCTCTGCACCTAGGGTCCTGGGCCTTGGCCTCAGGAGCGCTGCAGAGCCGGTCAGTAA
GATTCCCAGGCAGTAGAGAACTTGAGATATTCCAGGCACAGCTACTCATGGGTGATCGGAGTAA
GGTGTCGTTTCTTGCTTATCAGTCTCCTTCCCGAATTCAGATTCACACCCTGCTGAACATCTCT
ACACACCTAACCAGGAATTGGGACCCAGCATCCAGATAAGGGTTCGTTTTTCTCTGGTGCAGCT
TAGGGCTGTGTGCTCAGAACACCACGGGCAGGTGAACATGGCAGAGACATTGGAGTTCAACGAC
ATCTTCCAGGAGGTGAAAGGGTCCATGAATGATGGGAGGCTTCGATTGAGCCGTCAGGGTATCA
TCTTTAAGAACAGCAAGACGGGCAAAGTGGACAACATCCAGGCCGGGGAGTTGACCGAAGGCAT
CTGGCGTCGGGTAGCATTAGGCCATGGACTTAAACTGCTCACAAAGAATGGGCATGTCTACAAG
TATGATGGCTTCCGTGAATCGGAATTTGAGAAGCTCTCTGACTTTTTCAAAACCCACTATCGCC
TTGAGCTGATGGAGAAGGATCTCTGTGTGAAGGGCTGGAACTGGGGGACAGTGAAATTTGGTGG
GCAGCTGCTTTCTTTTGACATTGGTGATCAACCAGTCTTTGAGATACCCCTAAGCAATGTGTCC
CAGTGTACAACAGGCAAGAATGAGGTGACCCTGGAATTCCACCAGAACGATGATGCTGAAGTAT
CTCTCATGGAGGTGCGCTTCTATGTCCCTCCCACGCAGGAAGATGGAGTGGACCCTGTGGAGGC
CTTTGCCCAGAATGTCCTGTCAAAGGCAGATGTGATCCAGGCCACTGGAGATGCCATCTGCATC
TTCCGGGAGCTGCAGTGTTTGACTCCTCGTGGTCGTTACGATATCCGGATCTACCCTACCTTTC
TACACCTGCATGGCAAAACCTTTGACTACAAGATCCCCTATACTACAGTTCTCCGTCTCTTCCT
ACTGCCCCACAAGGATCAGAGACAGATGTTCTTTGTGATCAGCCTGGATCCCCCCATCAAGCAG
GGCCAAACTCGTTACCACTTCCTGATCCTCCTCTTCTCAAAGGATGAGGACATCTCCTTGACTC
TCAACATGAATGAGGAAGAAGTAGAAAAGCGCTTTGAGGGGCGACTCACCAAGAACATGTCAGG
ATCCCTTTATGAGATGGTTAGCCGGGTCATGAAAGCACTTGTAAACCGTAAAATCACAGTCCCA
GGCAACTTCCAAGGGCATTCGGGGGCCCAGTGTATCACCTGCTCCTATAAGGCCAGCTCAGGAC
TCCTGTACCCACTGGAGCGGGGCTTCATCTATGTGCACAAGCCCCCTGTGCACATCCGCTTCGA
TGAGATCTCTTTCGTCAACTTTGCCCGTGGCACCACAACCACTCGTTCCTTCGACTTTGAGATT
GAGACCAAGCAAGGCACTCAGTATACCTTCAGCAGCATTGAGCGGGAAGAGTATGGAAAGCTGT
TTGATTTTGTCAATGCAAAAAAGCTCAACATCAAGAACAGAGGGCTGAAAGAGGGCATTAACCC
AGGTTATGATGATTACGCTGACTCTGATGAAGACCAGCATGATGCCTATTTGGAGAGGATGAAG
GAGGAGGGCAAGATCCGGGAGGAGAATGCCAATGACAGCAGTGACGACTCAGGAGAAGAAACTG
ATGAGTCCTTCAATCCTGGTGAAGAAGAAGAAGATGTGGCAGAGGAGTTTGATAGCAATGCCTC
TGCCAGCTCCTCCAGTAATGAGGGCGACAGCGACCGAGAAGAGAAGAAGCGGAAACAGCTCAAA
AGAGCCAAGATGGCCAAGGATCGGAAGAGCCGCAAGAAGTCTTCAGAGGGGAAGAAGGGTAAGG
ATCCAAATGCCCCCAAGAGGCCTATGTCTGCGTACATGTTGTGGCTTAATGCAAGCCGAGAGAA
GATCAAGTCAGATCACCCTGGCATCAGCATCACAGATCTTTCCAAGAAGGCAGGCGAAATCTGG
AAGGGAATGTCCAAAGAGAAGAAAGAGGAGTGGGACCGCAAGGCCGAGGATGCTAGGAGGGAGT
ATGAGAAAGCCATGAAAGAGTATGAAGGAGGACGAGGGGACTCGTCTAAAAGGGACAAGTCTAA
GAAGAAAAAGAAAGTAAAAGCAAAGTTGGAAAAGAAATCCACTCCTTCCCGGGGCTCATCATCC
AAGTCTTCATCCAGGCAGTTGAGCGACAGCTTCAAGAGCAAAGAGTTTGTGTCCAGTGACGAGA
GCTCTTCAGGCGAGAACAAGAGCAAAAAGAAGAGGAGGCGGAGCGAGGACTCTGATGAAGAGGA
ACTAGCCAGTACTCCTCCAAGCTCAGAGGACTCTGCCTCAGGATCTGATGAGTAGAGGAAGAGA
ATTCCTGCCCTTGCCCTGTCACACCTCCAGGCTCACACCTCCAGGCTCCCTACTCATTTGGTAC
CAGTGTCTATGGATTCTGTGCCATCTGAGTAACTGCTCTTGGTGGCTTCCACTTCCCTGAGGCT
TTGAGGGAAGCACCTAACCTCTGCTTTGCAAGGAAAGCTCCATGCAATCTGGAAAGAGACTGGG
TACTGGCAGCGCATCGAAGGATCCAAGTCCTCATCCTACTTTGCTACTTTCCTGACTGTAGGGG
CAAAACTGCTTCCTGTCCTGTTCAAGTTGCTGCAGCAGGGGTCATGCGAAGTCAGGCCTGTAGC
TCCTAATAGGGGCCTATTTCTACTTTTATTTTGTATTTCTGGTCTGTGAAAACAATTTAATAAA
GGGAACTGACTTTGGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234477 ⟹ XP_006234539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	90,531,040 - 90,541,132 (+)	NCBI
mRatBN7.2	3	70,124,402 - 70,134,481 (+)	NCBI
Rnor_6.0	3	72,447,516 - 72,457,621 (+)	NCBI
Rnor_5.0	3	78,958,172 - 78,968,279 (+)	NCBI

Sequence:

show sequence

GGTTTGTGCGCGACTTCCGGTGGCGGGACGCGGAACCGCGCACGCGGGAAAAGGTTCCCCGGCA
CCCCCTCCCCCGTATCCCTATCCCCTCCCCTGCGTCCCCCTGCGCCCACCGCCCTCACTGTGTC
GTCGCGAGGCTGCAGTTCGAAGAGTCTCCTTCCCGAATTCAGATTCACACCCTGCTGAACATCT
CTACACACCTAACCAGGAATTGGGACCCAGCATCCAGATAAGGGTTCGTTTTTCTCTGGTGCAG
CTTAGGGCTGTGTGCTCAGAACACCACGGGCAGGTGAACATGGCAGAGACATTGGAGTTCAACG
ACATCTTCCAGGAGGTGAAAGGGTCCATGAATGATGGGAGGCTTCGATTGAGCCGTCAGGGTAT
CATCTTTAAGAACAGCAAGACGGGCAAAGTGGACAACATCCAGGCCGGGGAGTTGACCGAAGGC
ATCTGGCGTCGGGTAGCATTAGGCCATGGACTTAAACTGCTCACAAAGAATGGGCATGTCTACA
AGTATGATGGCTTCCGTGAATCGGAATTTGAGAAGCTCTCTGACTTTTTCAAAACCCACTATCG
CCTTGAGCTGATGGAGAAGGATCTCTGTGTGAAGGGCTGGAACTGGGGGACAGTGAAATTTGGT
GGGCAGCTGCTTTCTTTTGACATTGGTGATCAACCAGTCTTTGAGATACCCCTAAGCAATGTGT
CCCAGTGTACAACAGGCAAGAATGAGGTGACCCTGGAATTCCACCAGAACGATGATGCTGAAGT
ATCTCTCATGGAGGTGCGCTTCTATGTCCCTCCCACGCAGGAAGATGGAGTGGACCCTGTGGAG
GCCTTTGCCCAGAATGTCCTGTCAAAGGCAGATGTGATCCAGGCCACTGGAGATGCCATCTGCA
TCTTCCGGGAGCTGCAGTGTTTGACTCCTCGTGGTCGTTACGATATCCGGATCTACCCTACCTT
TCTACACCTGCATGGCAAAACCTTTGACTACAAGATCCCCTATACTACAGTTCTCCGTCTCTTC
CTACTGCCCCACAAGGATCAGAGACAGATGTTCTTTGTGATCAGCCTGGATCCCCCCATCAAGC
AGGGCCAAACTCGTTACCACTTCCTGATCCTCCTCTTCTCAAAGGATGAGGACATCTCCTTGAC
TCTCAACATGAATGAGGAAGAAGTAGAAAAGCGCTTTGAGGGGCGACTCACCAAGAACATGTCA
GGATCCCTTTATGAGATGGTTAGCCGGGTCATGAAAGCACTTGTAAACCGTAAAATCACAGTCC
CAGGCAACTTCCAAGGGCATTCGGGGGCCCAGTGTATCACCTGCTCCTATAAGGCCAGCTCAGG
ACTCCTGTACCCACTGGAGCGGGGCTTCATCTATGTGCACAAGCCCCCTGTGCACATCCGCTTC
GATGAGATCTCTTTCGTCAACTTTGCCCGTGGCACCACAACCACTCGTTCCTTCGACTTTGAGA
TTGAGACCAAGCAAGGCACTCAGTATACCTTCAGCAGCATTGAGCGGGAAGAGTATGGAAAGCT
GTTTGATTTTGTCAATGCAAAAAAGCTCAACATCAAGAACAGAGGGCTGAAAGAGGGCATTAAC
CCAGGTTATGATGATTACGCTGACTCTGATGAAGACCAGCATGATGCCTATTTGGAGAGGATGA
AGGAGGAGGGCAAGATCCGGGAGGAGAATGCCAATGACAGCAGTGACGACTCAGGAGAAGAAAC
TGATGAGTCCTTCAATCCTGGTGAAGAAGAAGAAGATGTGGCAGAGGAGTTTGATAGCAATGCC
TCTGCCAGCTCCTCCAGTAATGAGGGCGACAGCGACCGAGAAGAGAAGAAGCGGAAACAGCTCA
AAAGAGCCAAGATGGCCAAGGATCGGAAGAGCCGCAAGAAGTCTTCAGAGGGGAAGAAGGGTAA
GGATCCAAATGCCCCCAAGAGGCCTATGTCTGCGTACATGTTGTGGCTTAATGCAAGCCGAGAG
AAGATCAAGTCAGATCACCCTGGCATCAGCATCACAGATCTTTCCAAGAAGGCAGGCGAAATCT
GGAAGGGAATGTCCAAAGAGAAGAAAGAGGAGTGGGACCGCAAGGCCGAGGATGCTAGGAGGGA
GTATGAGAAAGCCATGAAAGAGTATGAAGGAGGACGAGGGGACTCGTCTAAAAGGGACAAGTCT
AAGAAGAAAAAGAAAGTAAAAGCAAAGTTGGAAAAGAAATCCACTCCTTCCCGGGGCTCATCAT
CCAAGTCTTCATCCAGGCAGTTGAGCGACAGCTTCAAGAGCAAAGAGTTTGTGTCCAGTGACGA
GAGCTCTTCAGGCGAGAACAAGAGCAAAAAGAAGAGGAGGCGGAGCGAGGACTCTGATGAAGAG
GAACTAGCCAGTACTCCTCCAAGCTCAGAGGACTCTGCCTCAGGATCTGATGAGTAGAGGAAGA
GAATTCCTGCCCTTGCCCTGTCACACCTCCAGGCTCACACCTCCAGGCTCCCTACTCATTTGGT
ACCAGTGTCTATGGATTCTGTGCCATCTGAGTAACTGCTCTTGGTGGCTTCCACTTCCCTGAGG
CTTTGAGGGAAGCACCTAACCTCTGCTTTGCAAGGAAAGCTCCATGCAATCTGGAAAGAGACTG
GGTACTGGCAGCGCATCGAAGGATCCAAGTCCTCATCCTACTTTGCTACTTTCCTGACTGTAGG
GGCAAAACTGCTTCCTGTCCTGTTCAAGTTGCTGCAGCAGGGGTCATGCGAAGTCAGGCCTGTA
GCTCCTAATAGGGGCCTATTTCTACTTTTATTTTGTATTTCTGGTCTGTGAAAACAATTTAATA
AAGGGAACTGACTTTGGAAACGA

hide sequence

RefSeq Acc Id:

XM_008761993 ⟹ XP_008760215

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	90,531,024 - 90,541,132 (+)	NCBI
mRatBN7.2	3	70,124,371 - 70,134,481 (+)	NCBI
Rnor_6.0	3	72,447,516 - 72,457,621 (+)	NCBI

Sequence:

show sequence

GGTTTGTGCGCGACTTCCGGTGGCGGGACGCGGAACCGCGCACGCGGGAAAAGGTTCCCCGGCA
CCCCCTCCCCCGTATCCCTATCCCCTCCCCTGCGTCCCCCTGCGCCCACCGCCCTCACTGTGTC
GTCGCGAGGCTGCAGTTCGAAGAGATTCACACCCTGCTGAACATCTCTACACACCTAACCAGGA
ATTGGGACCCAGCATCCAGATAAGGGTTCGTTTTTCTCTGGTGCAGCTTAGGGCTGTGTGCTCA
GAACACCACGGGCAGGTGAACATGGCAGAGACATTGGAGTTCAACGACATCTTCCAGGAGGTGA
AAGGGTCCATGAATGATGGGAGGCTTCGATTGAGCCGTCAGGGTATCATCTTTAAGAACAGCAA
GACGGGCAAAGTGGACAACATCCAGGCCGGGGAGTTGACCGAAGGCATCTGGCGTCGGGTAGCA
TTAGGCCATGGACTTAAACTGCTCACAAAGAATGGGCATGTCTACAAGTATGATGGCTTCCGTG
AATCGGAATTTGAGAAGCTCTCTGACTTTTTCAAAACCCACTATCGCCTTGAGCTGATGGAGAA
GGATCTCTGTGTGAAGGGCTGGAACTGGGGGACAGTGAAATTTGGTGGGCAGCTGCTTTCTTTT
GACATTGGTGATCAACCAGTCTTTGAGATACCCCTAAGCAATGTGTCCCAGTGTACAACAGGCA
AGAATGAGGTGACCCTGGAATTCCACCAGAACGATGATGCTGAAGTATCTCTCATGGAGGTGCG
CTTCTATGTCCCTCCCACGCAGGAAGATGGAGTGGACCCTGTGGAGGCCTTTGCCCAGAATGTC
CTGTCAAAGGCAGATGTGATCCAGGCCACTGGAGATGCCATCTGCATCTTCCGGGAGCTGCAGT
GTTTGACTCCTCGTGGTCGTTACGATATCCGGATCTACCCTACCTTTCTACACCTGCATGGCAA
AACCTTTGACTACAAGATCCCCTATACTACAGTTCTCCGTCTCTTCCTACTGCCCCACAAGGAT
CAGAGACAGATGTTCTTTGTGATCAGCCTGGATCCCCCCATCAAGCAGGGCCAAACTCGTTACC
ACTTCCTGATCCTCCTCTTCTCAAAGGATGAGGACATCTCCTTGACTCTCAACATGAATGAGGA
AGAAGTAGAAAAGCGCTTTGAGGGGCGACTCACCAAGAACATGTCAGGATCCCTTTATGAGATG
GTTAGCCGGGTCATGAAAGCACTTGTAAACCGTAAAATCACAGTCCCAGGCAACTTCCAAGGGC
ATTCGGGGGCCCAGTGTATCACCTGCTCCTATAAGGCCAGCTCAGGACTCCTGTACCCACTGGA
GCGGGGCTTCATCTATGTGCACAAGCCCCCTGTGCACATCCGCTTCGATGAGATCTCTTTCGTC
AACTTTGCCCGTGGCACCACAACCACTCGTTCCTTCGACTTTGAGATTGAGACCAAGCAAGGCA
CTCAGTATACCTTCAGCAGCATTGAGCGGGAAGAGTATGGAAAGCTGTTTGATTTTGTCAATGC
AAAAAAGCTCAACATCAAGAACAGAGGGCTGAAAGAGGGCATTAACCCAGGTTATGATGATTAC
GCTGACTCTGATGAAGACCAGCATGATGCCTATTTGGAGAGGATGAAGGAGGAGGGCAAGATCC
GGGAGGAGAATGCCAATGACAGCAGTGACGACTCAGGAGAAGAAACTGATGAGTCCTTCAATCC
TGGTGAAGAAGAAGAAGATGTGGCAGAGGAGTTTGATAGCAATGCCTCTGCCAGCTCCTCCAGT
AATGAGGGCGACAGCGACCGAGAAGAGAAGAAGCGGAAACAGCTCAAAAGAGCCAAGATGGCCA
AGGATCGGAAGAGCCGCAAGAAGTCTTCAGAGGGGAAGAAGGGTAAGGATCCAAATGCCCCCAA
GAGGCCTATGTCTGCGTACATGTTGTGGCTTAATGCAAGCCGAGAGAAGATCAAGTCAGATCAC
CCTGGCATCAGCATCACAGATCTTTCCAAGAAGGCAGGCGAAATCTGGAAGGGAATGTCCAAAG
AGAAGAAAGAGGAGTGGGACCGCAAGGCCGAGGATGCTAGGAGGGAGTATGAGAAAGCCATGAA
AGAGTATGAAGGAGGACGAGGGGACTCGTCTAAAAGGGACAAGTCTAAGAAGAAAAAGAAAGTA
AAAGCAAAGTTGGAAAAGAAATCCACTCCTTCCCGGGGCTCATCATCCAAGTCTTCATCCAGGC
AGTTGAGCGACAGCTTCAAGAGCAAAGAGTTTGTGTCCAGTGACGAGAGCTCTTCAGGCGAGAA
CAAGAGCAAAAAGAAGAGGAGGCGGAGCGAGGACTCTGATGAAGAGGAACTAGCCAGTACTCCT
CCAAGCTCAGAGGACTCTGCCTCAGGATCTGATGAGTAGAGGAAGAGAATTCCTGCCCTTGCCC
TGTCACACCTCCAGGCTCACACCTCCAGGCTCCCTACTCATTTGGTACCAGTGTCTATGGATTC
TGTGCCATCTGAGTAACTGCTCTTGGTGGCTTCCACTTCCCTGAGGCTTTGAGGGAAGCACCTA
ACCTCTGCTTTGCAAGGAAAGCTCCATGCAATCTGGAAAGAGACTGGGTACTGGCAGCGCATCG
AAGGATCCAAGTCCTCATCCTACTTTGCTACTTTCCTGACTGTAGGGGCAAAACTGCTTCCTGT
CCTGTTCAAGTTGCTGCAGCAGGGGTCATGCGAAGTCAGGCCTGTAGCTCCTAATAGGGGCCTA
TTTCTACTTTTATTTTGTATTTCTGGTCTGTGAAAACAATTTAATAAAGGGAACTGACTTTGGA
AACGA

hide sequence

RefSeq Acc Id:

XM_063284633 ⟹ XP_063140703

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	90,531,360 - 90,541,132 (+)	NCBI

RefSeq Acc Id:

XM_063284634 ⟹ XP_063140704

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	90,531,031 - 90,541,132 (+)	NCBI

RefSeq Acc Id:

XM_063284635 ⟹ XP_063140705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	90,531,330 - 90,541,132 (+)	NCBI

RefSeq Acc Id:

XM_063284636 ⟹ XP_063140706

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	90,531,030 - 90,541,132 (+)	NCBI

RefSeq Acc Id:

XM_063284637 ⟹ XP_063140707

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	90,531,359 - 90,541,132 (+)	NCBI

RefSeq Acc Id:

XM_063284638 ⟹ XP_063140708

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	90,531,319 - 90,541,132 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_112383	(Get FASTA)	NCBI Sequence Viewer
	XP_006234539	(Get FASTA)	NCBI Sequence Viewer
	XP_008760215	(Get FASTA)	NCBI Sequence Viewer
	XP_063140703	(Get FASTA)	NCBI Sequence Viewer
	XP_063140704	(Get FASTA)	NCBI Sequence Viewer
	XP_063140705	(Get FASTA)	NCBI Sequence Viewer
	XP_063140706	(Get FASTA)	NCBI Sequence Viewer
	XP_063140707	(Get FASTA)	NCBI Sequence Viewer
	XP_063140708	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA40927	(Get FASTA)	NCBI Sequence Viewer
	AAH83588	(Get FASTA)	NCBI Sequence Viewer
	EDL79330	(Get FASTA)	NCBI Sequence Viewer
	EDL79331	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012022
	ENSRNOP00000073084
GenBank Protein	Q04931	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_112383 ⟸ NM_031121

- UniProtKB:

Q5XIT2 (UniProtKB/Swiss-Prot), Q04931 (UniProtKB/Swiss-Prot), A6HMS9 (UniProtKB/TrEMBL), A0A8L2R8I0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKL
LTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPV
FEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVI
QATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFV
ISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKA
LVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTT
TTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQ
HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDR
EEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITD
LSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSKRDKSKKKKKVKAKLEKK
STPSRGSSSKSSSRQLSDSFKSKEFVSSDESSSGENKSKKKRRRSEDSDEEELASTPPSSEDSA
SGSDE

hide sequence

RefSeq Acc Id:	XP_006234539 ⟸ XM_006234477
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIT2 (UniProtKB/Swiss-Prot), Q04931 (UniProtKB/Swiss-Prot), A6HMS9 (UniProtKB/TrEMBL), A0A8L2R8I0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKL LTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPV FEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVI QATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFV ISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKA LVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTT TTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQ HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDR EEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITD LSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSKRDKSKKKKKVKAKLEKK STPSRGSSSKSSSRQLSDSFKSKEFVSSDESSSGENKSKKKRRRSEDSDEEELASTPPSSEDSA SGSDE hide sequence

RefSeq Acc Id:	XP_008760215 ⟸ XM_008761993
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2R8I0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKL LTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPV FEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVI QATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFV ISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKA LVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTT TTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQ HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDR EEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITD LSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSKRDKSKKKKKVKAKLEKK STPSRGSSSKSSSRQLSDSFKSKEFVSSDESSSGENKSKKKRRRSEDSDEEELASTPPSSEDSA SGSDE hide sequence

Ensembl Acc Id:

ENSRNOP00000012022 ⟸ ENSRNOT00000012022

Ensembl Acc Id:

ENSRNOP00000073084 ⟸ ENSRNOT00000091901

RefSeq Acc Id:	XP_063140706 ⟸ XM_063284636
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIT2 (UniProtKB/Swiss-Prot), Q04931 (UniProtKB/Swiss-Prot), A6HMS9 (UniProtKB/TrEMBL), A0A8L2R8I0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140704 ⟸ XM_063284634
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIT2 (UniProtKB/Swiss-Prot), Q04931 (UniProtKB/Swiss-Prot), A6HMS9 (UniProtKB/TrEMBL), A0A8L2R8I0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140708 ⟸ XM_063284638
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIT2 (UniProtKB/Swiss-Prot), Q04931 (UniProtKB/Swiss-Prot), A6HMS9 (UniProtKB/TrEMBL), A0A8L2R8I0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140705 ⟸ XM_063284635
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIT2 (UniProtKB/Swiss-Prot), Q04931 (UniProtKB/Swiss-Prot), A6HMS9 (UniProtKB/TrEMBL), A0A8L2R8I0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140707 ⟸ XM_063284637
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIT2 (UniProtKB/Swiss-Prot), Q04931 (UniProtKB/Swiss-Prot), A6HMS9 (UniProtKB/TrEMBL), A0A8L2R8I0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140703 ⟸ XM_063284633
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIT2 (UniProtKB/Swiss-Prot), Q04931 (UniProtKB/Swiss-Prot), A6HMS9 (UniProtKB/TrEMBL), A0A8L2R8I0 (UniProtKB/TrEMBL)

Protein Domains

HMG box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q04931-F1-model_v2	AlphaFold	Q04931	1-709	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692192

Promoter ID:

EPDNEW_R2714

Type:

initiation region

Name:

Ssrp1_1

Description:

structure specific recognition protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	72,447,525 - 72,447,585	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621143	AgrOrtholog
BioCyc Gene	G2FUF-49139	BioCyc
Ensembl Genes	ENSRNOG00000008825	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000012022	ENTREZGENE
	ENSRNOT00000091901	ENTREZGENE
Gene3D-CATH	1.10.30.10	UniProtKB/Swiss-Prot
	2.30.29.150	UniProtKB/Swiss-Prot
	2.30.29.220	UniProtKB/Swiss-Prot
	2.30.29.30	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7132288	IMAGE-MGC_LOAD
InterPro	DUF1747	UniProtKB/Swiss-Prot
	HMG_box_dom	UniProtKB/Swiss-Prot
	HMG_box_dom_sf	UniProtKB/Swiss-Prot
	PH-like_dom_sf	UniProtKB/Swiss-Prot
	POB3_N	UniProtKB/Swiss-Prot
	RTT106/SSRP1_HistChap/FACT	UniProtKB/Swiss-Prot
	SSrcognition	UniProtKB/Swiss-Prot
	SSRP1-like_PH1	UniProtKB/Swiss-Prot
	SSRP1_C	UniProtKB/Swiss-Prot
	SSRP1_dom	UniProtKB/Swiss-Prot
	SSRP1_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:81785	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94298	IMAGE-MGC_LOAD
NCBI Gene	81785	ENTREZGENE
PANTHER	FACT COMPLEX SUBUNIT SSRP1	UniProtKB/Swiss-Prot
	FACT COMPLEX SUBUNIT SSRP1	UniProtKB/Swiss-Prot
Pfam	HMG_box	UniProtKB/Swiss-Prot
	PH1_SSRP1-like	UniProtKB/Swiss-Prot
	POB3_N	UniProtKB/Swiss-Prot
	Rtt106	UniProtKB/Swiss-Prot
	SSrecog	UniProtKB/Swiss-Prot
	SSRP1_C	UniProtKB/Swiss-Prot
PhenoGen	Ssrp1	PhenoGen
PRINTS	SSRCOGNITION	UniProtKB/Swiss-Prot
PROSITE	HMG_BOX_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000008825	RatGTEx
SMART	HMG	UniProtKB/Swiss-Prot
	Rtt106	UniProtKB/Swiss-Prot
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot
	SSF47095	UniProtKB/Swiss-Prot
UniProt	A0A8L2Q6E8_RAT	UniProtKB/TrEMBL
	A0A8L2R8I0	ENTREZGENE, UniProtKB/TrEMBL
	A6HMS9	ENTREZGENE, UniProtKB/TrEMBL
	Q04931	ENTREZGENE
	Q5XIT2	ENTREZGENE
	SSRP1_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q5XIT2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-02-26	Ssrp1	structure specific recognition protein 1		Structure specific recognition protein 1	Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Ssrp1	Structure specific recognition protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_process	may regulate transcription	730020

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations