Rps14 (ribosomal protein S14) - Rat Genome Database

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Gene: Rps14 (ribosomal protein S14) Rattus norvegicus
Analyze
Symbol: Rps14
Name: ribosomal protein S14
RGD ID: 62025
Description: A structural constituent of ribosome. Involved in ribosomal small subunit assembly. Part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in chromosome 5q deletion syndrome. Orthologous to human RPS14 (ribosomal protein S14); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 40S ribosomal protein S14; small ribosomal subunit protein uS11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rps14-ps7  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81856,492,010 - 56,503,092 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1856,498,245 - 56,503,091 (+)EnsemblGRCr8
mRatBN7.21854,227,854 - 54,232,638 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,227,854 - 54,233,166 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1856,316,437 - 56,321,412 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01857,031,049 - 57,036,024 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01854,851,742 - 54,856,526 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01856,042,532 - 56,047,316 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,044,369 - 56,047,316 (+)Ensemblrn6Rnor6.0
Rnor_5.01855,276,797 - 55,281,581 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41856,727,647 - 56,732,431 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1852,382,571 - 52,387,355 (+)NCBICelera
RGSC_v3.11856,799,878 - 56,804,663 (+)NCBI
Cytogenetic Map18q12.1NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
lead(0)  (ISO)
methidathion  (ISO)
miconazole  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
nitric oxide  (ISO)
omeprazole  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (EXP)
pirinixic acid  (EXP)
rotenone  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
stigmasterol  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Sequence of a cDNA encoding mouse ribosomal protein S14. Lee M, etal., Biosci Biotechnol Biochem 1998 Mar;62(3):573-4.
5. Ribosomal proteins S2, S6, S10, S14, S15 and S25 are localized on the surface of mammalian 40 S subunits and stabilize their conformation. A study with immobilized trypsin. Marion MJ and Marion C, FEBS Lett. 1988 May 23;232(2):281-5.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. The primary structure of rat ribosomal protein S14. Paz V, etal., Nucleic Acids Res 1989 Nov 25;17(22):9484.
11. GOA pipeline RGD automated data pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
14. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:3683397   PMID:7867928   PMID:8706699   PMID:9152021   PMID:15883184   PMID:16854843   PMID:18202658   PMID:18614015   PMID:19946888   PMID:20458337   PMID:21170055   PMID:21423176  
PMID:22082260   PMID:22681889   PMID:23376485   PMID:23979707   PMID:24625528   PMID:35352799  


Genomics

Comparative Map Data
Rps14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81856,492,010 - 56,503,092 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1856,498,245 - 56,503,091 (+)EnsemblGRCr8
mRatBN7.21854,227,854 - 54,232,638 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,227,854 - 54,233,166 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1856,316,437 - 56,321,412 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01857,031,049 - 57,036,024 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01854,851,742 - 54,856,526 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01856,042,532 - 56,047,316 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,044,369 - 56,047,316 (+)Ensemblrn6Rnor6.0
Rnor_5.01855,276,797 - 55,281,581 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41856,727,647 - 56,732,431 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1852,382,571 - 52,387,355 (+)NCBICelera
RGSC_v3.11856,799,878 - 56,804,663 (+)NCBI
Cytogenetic Map18q12.1NCBI
RPS14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385150,442,635 - 150,449,739 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5150,442,635 - 150,449,952 (-)Ensemblhg38GRCh38
GRCh375149,822,198 - 149,829,302 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,803,985 - 149,809,512 (-)NCBIBuild 36Build 36hg18NCBI36
Build 345149,803,996 - 149,809,512NCBI
Celera5145,904,832 - 145,910,362 (-)NCBICelera
Cytogenetic Map5q33.1NCBI
HuRef5144,971,240 - 144,976,773 (-)NCBIHuRef
CHM1_15149,256,215 - 149,261,742 (-)NCBICHM1_1
T2T-CHM13v2.05150,979,169 - 150,986,273 (-)NCBIT2T-CHM13v2.0
Rps14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391860,907,668 - 60,911,618 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1860,880,170 - 60,911,618 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381860,774,596 - 60,778,546 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1860,747,098 - 60,778,546 (+)Ensemblmm10GRCm38
MGSCv371860,934,250 - 60,938,200 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361860,900,018 - 60,903,913 (+)NCBIMGSCv36mm8
Celera1862,058,375 - 62,062,327 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.4NCBI
Rps14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554154,102,511 - 4,108,633 (+)Ensembl
ChiLan1.0NW_0049554154,103,223 - 4,108,633 (+)NCBIChiLan1.0ChiLan1.0
RPS14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24145,673,767 - 145,679,526 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15143,813,304 - 143,818,932 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05145,869,410 - 145,875,038 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15151,873,605 - 151,879,170 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,873,605 - 151,879,128 (-)EnsemblpanPan2panpan1.1
RPS14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,661,335 - 58,667,968 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,661,152 - 58,667,964 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha458,427,115 - 58,433,733 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0459,141,543 - 59,148,150 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl459,141,360 - 59,148,146 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,930,097 - 58,936,709 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0459,044,779 - 59,051,392 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,575,541 - 59,582,143 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rps14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213142,921,901 - 142,926,873 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365044,495,693 - 4,502,695 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365044,495,930 - 4,500,843 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,430,049 - 151,433,856 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12151,430,047 - 151,433,951 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPS14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,046,670 - 53,052,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2353,044,994 - 53,050,194 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603424,660,634 - 24,666,103 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247749,726,434 - 9,733,410 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247749,727,216 - 9,733,114 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rps14
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11571,165,752 - 71,170,608 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rps14
54 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:11
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000059501
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185449080186134022Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184891705460064728Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185335052168120379Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)183857591983575919Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184562030686134022Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050563968306Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184891573786134022Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184891573786134022Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)185384517561982387Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183199089176990891Rat
1331770Bp234Blood pressure QTL 2343.807arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184562030686134022Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184918722662647720Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183161050585493247Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)183337915878379158Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)184046238385462383Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185449080176272247Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)183199089176990891Rat
1331752Bw27Body weight QTL 272.963body mass (VT:0001259)body weight (CMO:0000012)185449080168120379Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)183337915878379158Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)183337915878379158Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)183337915878379158Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)185079521286134022Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183152278376522783Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)183337915878379158Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183337915878379158Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184891705460064728Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)183337915878379158Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184891705460064728Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183161050577371277Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183612162681121626Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)183199089176990891Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184891573786134022Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183164450879484311Rat
1598832Glom11Glomerulus QTL 112.9kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)185326667186134022Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)183199089176990891Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)185079521286134022Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183161050572538878Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)185219805968120379Rat

Markers in Region
MARC_9759-9760:996688576:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,904,138 - 54,904,449 (+)MAPPERmRatBN7.2
mRatBN7.25138,350,339 - 138,350,648 (+)MAPPERmRatBN7.2
Rnor_6.05144,083,176 - 144,083,484NCBIRnor6.0
Rnor_6.01759,804,014 - 59,804,324NCBIRnor6.0
Rnor_5.01761,593,283 - 61,593,593UniSTSRnor5.0
Rnor_5.05147,852,636 - 147,852,944UniSTSRnor5.0
RGSC_v3.45145,426,545 - 145,426,853UniSTSRGSC3.4
RGSC_v3.41763,457,903 - 63,458,213UniSTSRGSC3.4
Celera1756,244,169 - 56,244,479UniSTS
Celera5136,860,756 - 136,861,064UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map17q12.1UniSTS
Cytogenetic Map18q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 12 61 134 57 60 41 86 41 298 168 11 125 71 73 19 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000059501   ⟹   ENSRNOP00000056260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1856,498,245 - 56,503,091 (+)Ensembl
mRatBN7.2 Ensembl1854,227,854 - 54,233,166 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095750   ⟹   ENSRNOP00000092827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1854,228,391 - 54,232,541 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109750   ⟹   ENSRNOP00000086532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1854,228,391 - 54,232,541 (+)Ensembl
RefSeq Acc Id: NM_022672   ⟹   NP_073163
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81856,498,260 - 56,503,044 (+)NCBI
mRatBN7.21854,227,854 - 54,232,638 (+)NCBI
Rnor_6.01856,042,532 - 56,047,316 (+)NCBI
Rnor_5.01855,276,797 - 55,281,581 (+)NCBI
RGSC_v3.41856,727,647 - 56,732,431 (+)RGD
Celera1852,382,571 - 52,387,355 (+)RGD
Sequence:
RefSeq Acc Id: XM_063277276   ⟹   XP_063133346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81856,492,010 - 56,503,092 (+)NCBI
RefSeq Acc Id: XM_063277277   ⟹   XP_063133347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81856,498,280 - 56,503,092 (+)NCBI
Protein Sequences
Protein RefSeqs NP_073163 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133346 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133347 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58472 (Get FASTA)   NCBI Sequence Viewer  
  CAA33143 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000056260
GenBank Protein P13471 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_073163   ⟸   NM_022672
- UniProtKB: P13471 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000086532   ⟸   ENSRNOT00000109750
Ensembl Acc Id: ENSRNOP00000056260   ⟸   ENSRNOT00000059501
Ensembl Acc Id: ENSRNOP00000092827   ⟸   ENSRNOT00000095750
RefSeq Acc Id: XP_063133346   ⟸   XM_063277276
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A3Z2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133347   ⟸   XM_063277277
- Peptide Label: isoform X2
- UniProtKB: A6IXC6 (UniProtKB/TrEMBL),   A6IXC8 (UniProtKB/TrEMBL),   Q6PDV6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P13471-F1-model_v2 AlphaFold P13471 1-151 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62025 AgrOrtholog
BioCyc Gene G2FUF-7357 BioCyc
Ensembl Genes ENSRNOG00000018774 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000059501 ENTREZGENE
Gene3D-CATH 3.30.420.80 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6918325 IMAGE-MGC_LOAD
InterPro Ribosomal_S11 UniProtKB/Swiss-Prot
  Ribosomal_S11_CS UniProtKB/Swiss-Prot
  Ribosomal_S11_sf UniProtKB/Swiss-Prot
KEGG Report rno:29284 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72815 IMAGE-MGC_LOAD
NCBI Gene 29284 ENTREZGENE
PANTHER PTHR11759 UniProtKB/Swiss-Prot
Pfam Ribosomal_S11 UniProtKB/Swiss-Prot
PhenoGen Rps14 PhenoGen
PIRSF Ribosomal_S11 UniProtKB/Swiss-Prot
PROSITE RIBOSOMAL_S11 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000018774 RatGTEx
Superfamily-SCOP Translational machinery components UniProtKB/Swiss-Prot
TIGR TC228585
UniProt A0A8I6A3Z2 ENTREZGENE
  A6IXC6 ENTREZGENE, UniProtKB/TrEMBL
  A6IXC8 ENTREZGENE, UniProtKB/TrEMBL
  P13471 ENTREZGENE
  Q6PDV6 ENTREZGENE
  RS14_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rps14  ribosomal protein S14      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference