Selenow (selenoprotein W) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Selenow (selenoprotein W) Rattus norvegicus
Analyze
Symbol: Selenow
Name: selenoprotein W
RGD ID: 3661
Description: Predicted to enable antioxidant activity and triplet codon-amino acid adaptor activity. Involved in response to selenium ion. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human SELENOW (selenoprotein W); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: LOC103689961; MGC105482; Selenoprotein W muscle 1; selenoprotein W, 1; selenoprotein W, muscle 1; selenoprotein W-like; SelW; Sepw1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Selenow-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
NCBI Annotation Information: Note: GeneIDs 103689961 and 25545 are annotated independently on Rnor_6.0 but may be redundant loci. [04 May 2017]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,727,631 - 85,732,703 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl185,727,632 - 85,732,703 (-)EnsemblGRCr8
mRatBN7.2176,599,441 - 76,604,514 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,599,464 - 76,604,500 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl176,598,779 - 76,604,724 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx181,974,548 - 81,979,557 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,538,613 - 90,543,622 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,729,686 - 83,734,695 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0177,530,692 - 77,535,765 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,533,148 - 77,535,681 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl177,803,475 - 77,808,513 (-)Ensemblrn6Rnor6.0
Rnor_5.0178,799,172 - 78,804,245 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4176,249,869 - 76,254,942 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera171,089,734 - 71,094,810 (-)NCBICelera
RGSC_v3.1176,327,980 - 76,333,020 (-)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dinitrotoluene  (EXP)
2-nitrofluorene  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dicyclanil  (ISO)
diethylstilbestrol  (EXP)
dimethyl sulfoxide  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (EXP,ISO)
ethanol  (ISO)
fenthion  (ISO)
flavonoids  (EXP)
glutathione  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
lead(0)  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methylmercury chloride  (ISO)
motexafin gadolinium  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodimethylamine  (EXP)
nickel dichloride  (EXP)
nitrates  (ISO)
nitrofen  (EXP)
okadaic acid  (ISO)
oxaliplatin  (EXP)
p-chloromercuribenzoic acid  (ISO)
pentachlorophenol  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
piroxicam  (ISO)
poly(vinylpyrrolidone)  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
pyrogallol  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
selenium atom  (EXP,ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
topotecan  (EXP)
triclosan  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)
zinc acetate  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Selenium requirements are higher for glutathione peroxidase-1 mRNA than gpx1 activity in rat testis. Schriever SC, etal., Exp Biol Med (Maywood). 2009 May;234(5):513-21. Epub 2009 Feb 20.
7. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
8. Rat skeletal muscle selenoprotein W: cDNA clone and mRNA modulation by dietary selenium. Vendeland SC, etal., Proc Natl Acad Sci U S A 1995 Sep 12;92(19):8749-53.
Additional References at PubMed
PMID:7896009   PMID:8349599   PMID:8889548   PMID:9256076   PMID:12477932   PMID:15055543   PMID:15337603   PMID:15489334   PMID:20956524   PMID:22479358   PMID:27645994  


Genomics

Comparative Map Data
Selenow
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,727,631 - 85,732,703 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl185,727,632 - 85,732,703 (-)EnsemblGRCr8
mRatBN7.2176,599,441 - 76,604,514 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,599,464 - 76,604,500 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl176,598,779 - 76,604,724 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx181,974,548 - 81,979,557 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,538,613 - 90,543,622 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,729,686 - 83,734,695 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0177,530,692 - 77,535,765 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,533,148 - 77,535,681 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl177,803,475 - 77,808,513 (-)Ensemblrn6Rnor6.0
Rnor_5.0178,799,172 - 78,804,245 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4176,249,869 - 76,254,942 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera171,089,734 - 71,094,810 (-)NCBICelera
RGSC_v3.1176,327,980 - 76,333,020 (-)NCBI
Cytogenetic Map1q21NCBI
SELENOW
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,778,703 - 47,784,682 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,778,677 - 47,784,686 (+)Ensemblhg38GRCh38
GRCh371948,281,960 - 48,287,939 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,973,654 - 52,979,755 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341952,973,653 - 52,979,751NCBI
Celera1945,087,540 - 45,093,641 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1944,708,351 - 44,714,452 (+)NCBIHuRef
CHM1_11948,284,165 - 48,290,265 (+)NCBICHM1_1
T2T-CHM13v2.01950,609,522 - 50,615,500 (+)NCBIT2T-CHM13v2.0
Selenow
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39715,651,133 - 15,656,296 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl715,651,133 - 15,656,327 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38715,917,208 - 15,922,371 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl715,917,208 - 15,922,402 (-)Ensemblmm10GRCm38
MGSCv37716,502,557 - 16,507,720 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36715,075,730 - 15,080,848 (-)NCBIMGSCv36mm8
Celera713,115,873 - 13,121,036 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.62NCBI
Selenow
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555741,522,304 - 1,526,862 (+)NCBIChiLan1.0ChiLan1.0
LOC106634549
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,738,266 - 195,739,874 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,857,104 - 194,858,696 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,374,648 - 30,375,515 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,397,890 - 31,412,050 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1953,425,939 - 53,428,515 (+)EnsemblpanPan2panpan1.1
SELENOW
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,285,443 - 108,289,551 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,285,443 - 108,289,568 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1107,768,244 - 107,772,352 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01108,811,307 - 108,815,497 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11108,479,650 - 108,483,762 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,124,201 - 108,128,312 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,991,920 - 108,996,033 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Selenow
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,740,658 - 19,751,877 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366641,358,753 - 1,361,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENOW
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,470,787 - 53,474,652 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1653,470,563 - 53,474,662 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,000,933 - 49,004,982 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SELENOW
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,740,545 - 101,741,532 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603314,919,248 - 14,919,909 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Selenow
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248326,129,073 - 6,132,619 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Selenow
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12173,165,979 - 173,170,940 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Selenow
71 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:87
Interacting mature miRNAs:91
Transcripts:ENSRNOT00000018559
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
RH133310  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2176,599,535 - 76,599,735 (+)MAPPERmRatBN7.2
Rnor_6.0177,803,569 - 77,803,768NCBIRnor6.0
Rnor_6.0177,530,787 - 77,530,986NCBIRnor6.0
Rnor_5.0179,068,127 - 79,068,326UniSTSRnor5.0
Rnor_5.0178,799,267 - 78,799,466UniSTSRnor5.0
RGSC_v3.4176,249,964 - 76,250,163UniSTSRGSC3.4
Celera171,089,829 - 71,090,028UniSTS
RH 3.4 Map1777.5UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 13 67 166 91 90 59 92 59 6 357 193 11 145 81 94 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC087625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI279050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI281207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN931873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U25264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000018559   ⟹   ENSRNOP00000018559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl177,533,148 - 77,535,681 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078917   ⟹   ENSRNOP00000069820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl177,805,929 - 77,808,462 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080422   ⟹   ENSRNOP00000070487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl185,727,633 - 85,732,703 (-)Ensembl
mRatBN7.2 Ensembl176,599,464 - 76,604,500 (+)Ensembl
Rnor_6.0 Ensembl177,803,475 - 77,808,513 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,598,779 - 76,604,724 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,598,986 - 76,604,722 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,598,779 - 76,604,511 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,598,986 - 76,604,722 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,598,779 - 76,604,511 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl185,727,632 - 85,730,862 (-)Ensembl
mRatBN7.2 Ensembl176,599,235 - 76,604,511 (-)Ensembl
RefSeq Acc Id: NM_013027   ⟹   NP_037159
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,727,631 - 85,732,703 (-)NCBI
mRatBN7.2176,599,441 - 76,604,514 (-)NCBI
Rnor_6.0177,530,692 - 77,535,765 (-)NCBI
Rnor_5.0178,799,172 - 78,804,245 (-)NCBI
RGSC_v3.4176,249,869 - 76,254,942 (-)RGD
Celera171,089,734 - 71,094,810 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_037159 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52255 (Get FASTA)   NCBI Sequence Viewer  
  AAH87625 (Get FASTA)   NCBI Sequence Viewer  
  EDM08350 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000112552
GenBank Protein P63301 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037159   ⟸   NM_013027
- UniProtKB: P63301 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070487   ⟸   ENSRNOT00000080422
Ensembl Acc Id: ENSRNOP00000018559   ⟸   ENSRNOT00000018559
Ensembl Acc Id: ENSRNOP00000069820   ⟸   ENSRNOT00000078917

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689720
Promoter ID:EPDNEW_R243
Type:multiple initiation site
Name:Selenow_1
Description:selenoprotein W
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0177,535,751 - 77,535,811EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3661 AgrOrtholog
BioCyc Gene G2FUF-60636 BioCyc
Ensembl Genes ENSRNOG00000013548 Ensembl
  ENSRNOG00000051483 Ensembl, ENTREZGENE
  ENSRNOG00000067799 Ensembl
Ensembl Transcript ENSRNOT00000080422 ENTREZGENE
Gene3D-CATH Glutaredoxin UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7316562 IMAGE-MGC_LOAD
InterPro Selenoprotein_Rdx-typ UniProtKB/Swiss-Prot
  SelW_related UniProtKB/Swiss-Prot
  Thioredoxin-like_sf UniProtKB/Swiss-Prot
KEGG Report rno:25545 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105482 IMAGE-MGC_LOAD
NCBI Gene 25545 ENTREZGENE
PANTHER SELENOPROTEIN W UniProtKB/Swiss-Prot
  SELENOPROTEIN W UniProtKB/Swiss-Prot
Pfam Rdx UniProtKB/Swiss-Prot
PhenoGen Selenow PhenoGen
RatGTEx ENSRNOG00000013548 RatGTEx
  ENSRNOG00000051483 RatGTEx
  ENSRNOG00000067799 RatGTEx
RNAcentral URS00022AE95D RNACentral
  URS00022AECBA RNACentral
  URS00022B01AC RNACentral
  URS00022B1831 RNACentral
  URS00022B1A4E RNACentral
  URS00022B2BF2 RNACentral
  URS00022B3E5C RNACentral
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot
TIGR TC228682
UniProt A0ABK0LWC0_RAT UniProtKB/TrEMBL
  P63301 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O35965 UniProtKB/Swiss-Prot
  P49904 UniProtKB/Swiss-Prot
  Q9JIC2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Selenow  selenoprotein W  LOC103689961  selenoprotein W-like  Data merged from RGD:9418506 737654 PROVISIONAL
2016-09-28 Selenow  selenoprotein W  Sepw1  selenoprotein W, 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103689961  selenoprotein W-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-11-20 Sepw1  selenoprotein W, 1  Sepw1  selenoprotein W, muscle 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Sepw1  Selenoprotein W muscle 1      Symbol and Name status set to approved 70586 APPROVED