Selenow (selenoprotein W) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Selenow (selenoprotein W) Ictidomys tridecemlineatus
Analyze
Symbol: Selenow
Name: selenoprotein W
RGD ID: 12460288
Description: INVOLVED IN response to selenium ion (ortholog); ASSOCIATED WITH epilepsy (ortholog); Experimental Liver Cirrhosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: selenoprotein W, 1; Sepw1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,740,658 - 19,751,877 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366641,358,753 - 1,361,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Selenow
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,740,658 - 19,751,877 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366641,358,753 - 1,361,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENOW
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,778,703 - 47,784,682 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,778,677 - 47,784,686 (+)EnsemblGRCh38hg38GRCh38
GRCh371948,281,960 - 48,287,939 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,973,654 - 52,979,755 (+)NCBINCBI36Build 36hg18NCBI36
Build 341952,973,653 - 52,979,751NCBI
Celera1945,087,540 - 45,093,641 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1944,708,351 - 44,714,452 (+)NCBIHuRef
CHM1_11948,284,165 - 48,290,265 (+)NCBICHM1_1
T2T-CHM13v2.01950,609,522 - 50,615,500 (+)NCBIT2T-CHM13v2.0
Selenow
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39715,651,133 - 15,656,296 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl715,651,133 - 15,656,327 (-)EnsemblGRCm39 Ensembl
GRCm38715,917,208 - 15,922,371 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl715,917,208 - 15,922,402 (-)EnsemblGRCm38mm10GRCm38
MGSCv37716,502,557 - 16,507,720 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,075,730 - 15,080,848 (-)NCBIMGSCv36mm8
Celera713,115,873 - 13,121,036 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.62NCBI
Selenow
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,727,631 - 85,732,703 (-)NCBIGRCr8
mRatBN7.2176,599,441 - 76,604,514 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,599,464 - 76,604,500 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl176,598,779 - 76,604,724 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx181,974,548 - 81,979,557 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,538,613 - 90,543,622 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,729,686 - 83,734,695 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0177,530,692 - 77,535,765 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,533,148 - 77,535,681 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,803,475 - 77,808,513 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0178,799,172 - 78,804,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,249,869 - 76,254,942 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1176,327,980 - 76,333,020 (-)NCBI
Celera171,089,734 - 71,094,810 (-)NCBICelera
Cytogenetic Map1q21NCBI
Selenow
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555741,522,304 - 1,526,862 (+)NCBIChiLan1.0ChiLan1.0
LOC106634549
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,738,266 - 195,739,874 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,857,104 - 194,858,696 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,374,648 - 30,375,515 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,397,890 - 31,412,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1953,425,939 - 53,428,515 (+)Ensemblpanpan1.1panPan2
SELENOW
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,285,443 - 108,289,551 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,285,443 - 108,289,568 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,768,244 - 107,772,352 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,811,307 - 108,815,497 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11108,479,650 - 108,483,762 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,124,201 - 108,128,312 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,991,920 - 108,996,033 (-)NCBIUU_Cfam_GSD_1.0
SELENOW
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,470,787 - 53,474,652 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,470,563 - 53,474,662 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,000,933 - 49,004,982 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SELENOW
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,740,545 - 101,741,532 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603314,919,248 - 14,919,909 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Selenow
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248326,129,073 - 6,132,619 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005336588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005336588   ⟹   XP_005336645
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934919,740,658 - 19,751,877 (+)NCBI
SpeTri2.0NW_0049366641,358,753 - 1,361,112 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005336645 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005336645   ⟸   XM_005336588
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Selenow ENTREZGENE