LOC106634549 (selenoprotein W) - Rat Genome Database

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Gene: LOC106634549 (selenoprotein W) Pan paniscus
Analyze
Symbol: LOC106634549 (Ensembl: SELENOW)
Name: selenoprotein W
RGD ID: 11885614
Description: INVOLVED IN response to selenium ion (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: selenoprotein W, 1; SELENOW; SEPW1
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,738,266 - 195,739,874 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,857,104 - 194,858,696 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,374,648 - 30,375,515 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,397,890 - 31,412,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1953,425,939 - 53,428,515 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

References

Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034942848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000050228   ⟹   ENSPPAP00000027388
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1953,425,939 - 53,428,515 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000050233   ⟹   ENSPPAP00000027393
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1953,425,939 - 53,428,515 (+)Ensembl
RefSeq Acc Id: XM_034942848   ⟹   XP_034798739
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21195,738,266 - 195,739,874 (+)NCBI
NHGRI_mPanPan11194,857,104 - 194,858,696 (+)NCBI
Mhudiblu_PPA_v0130,374,648 - 30,375,515 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034798739 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000027388.1
  ENSPPAP00000027393.1
Reference Protein Sequences
RefSeq Acc Id: XP_034798739   ⟸   XM_034942848
RefSeq Acc Id: ENSPPAP00000027393   ⟸   ENSPPAT00000050233
RefSeq Acc Id: ENSPPAP00000027388   ⟸   ENSPPAT00000050228


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036760 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050228.1 UniProtKB/TrEMBL
  ENSPPAT00000050233.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Selenoprotein_Rdx-typ UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
NCBI Gene SELENOW ENTREZGENE
PANTHER SELENOPROTEIN W UniProtKB/TrEMBL
  SELENOPROTEIN W UniProtKB/TrEMBL
Pfam Rdx UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A2R9BCL8_PANPA UniProtKB/TrEMBL
  A0A2R9BCM2_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC106634549  selenoprotein W  SELENOW  selenoprotein W  Symbol and/or name change 5135510 APPROVED