Advanced Search (OLGA)

Gene: Stum (stum, mechanosensory transduction mediator homolog) Rattus norvegicus

Analyze

Symbol:

Stum

Name:

stum, mechanosensory transduction mediator homolog

RGD ID:

1592263

Description:

Predicted to be located in membrane. Orthologous to human STUM (stum, mechanosensory transduction mediator homolog); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran; atrazine.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC689499; similar to Y97E10AL.1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STUM (stum, mechanosensory transduction mediator homolog)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Stum (mechanosensory transduction mediator)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stum (stum, mechanosensory transduction mediator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STUM (stum, mechanosensory transduction mediator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STUM (stum, mechanosensory transduction mediator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stum (stum, mechanosensory transduction mediator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STUM (stum, mechanosensory transduction mediator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STUM (stum, mechanosensory transduction mediator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stum (stum, mechanosensory transduction mediator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Stum (stum, mechanosensory transduction mediator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	STUM (stum, mechanosensory transduction mediator homolog)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Stum (mechanosensory transduction mediator)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stum	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stum	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y97E10AL.1	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	stum	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	stum	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	stum	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y51H7BR.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	94,704,074 - 94,759,097 (-)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	13	92,172,175 - 92,227,205 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	92,173,544 - 92,227,213 (-)	Ensembl				mRatBN7.2
Rnor_6.0	13	98,722,847 - 98,773,172 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	98,724,295 - 98,772,968 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	103,730,941 - 103,781,135 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	96,154,655 - 96,204,044 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	91,724,612 - 91,775,121 (-)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

amiodarone (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

D-glucose (ISO)

doxorubicin (ISO)

FR900359 (ISO)

fructose (ISO)

genistein (ISO)

glucose (ISO)

herbicide (ISO)

lipopolysaccharide (ISO)

nickel atom (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

propanal (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

tebuconazole (ISO)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Stum
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	94,704,074 - 94,759,097 (-)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	13	92,172,175 - 92,227,205 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	92,173,544 - 92,227,213 (-)	Ensembl				mRatBN7.2
Rnor_6.0	13	98,722,847 - 98,773,172 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	98,724,295 - 98,772,968 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	103,730,941 - 103,781,135 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	96,154,655 - 96,204,044 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	91,724,612 - 91,775,121 (-)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

STUM
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	226,548,764 - 226,609,230 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	226,548,764 - 226,609,230 (+)	Ensembl			hg38	GRCh38
GRCh37	1	226,736,465 - 226,796,931 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	224,803,124 - 224,859,926 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	199,927,428 - 199,984,233 (+)	NCBI		Celera
Cytogenetic Map	1	q42.12	NCBI
HuRef	1	197,253,661 - 197,314,061 (+)	NCBI		HuRef
CHM1_1	1	228,009,276 - 228,069,685 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	225,736,874 - 225,797,353 (+)	NCBI		T2T-CHM13v2.0

Stum
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	180,259,938 - 180,311,199 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	180,259,952 - 180,311,069 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	180,432,373 - 180,483,519 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	180,432,387 - 180,483,504 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	182,364,366 - 182,413,635 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	182,270,910 - 182,320,179 (-)	NCBI		MGSCv36	mm8
Celera	1	187,499,459 - 187,550,133 (-)	NCBI		Celera
Cytogenetic Map	1	H4	NCBI
cM Map	1	84.34	NCBI

Stum
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955489	665,224 - 703,018 (+)	Ensembl
ChiLan1.0	NW_004955489	665,550 - 708,553 (+)	NCBI	ChiLan1.0	ChiLan1.0

STUM
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	22,914,076 - 22,991,339 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	22,862,494 - 22,939,773 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	202,007,541 - 202,068,868 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	207,046,405 - 207,061,623 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

STUM
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	38,363,340 - 38,421,341 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	38,364,317 - 38,419,943 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	37,845,304 - 37,901,826 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	38,197,139 - 38,253,682 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	38,198,120 - 38,253,779 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	38,036,374 - 38,092,939 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	38,043,264 - 38,099,784 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	38,314,066 - 38,370,628 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stum
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	51,387,251 - 51,458,646 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936526	3,288,703 - 3,353,234 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936526	3,288,669 - 3,354,106 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STUM
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	14,295,023 - 14,345,724 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	14,294,959 - 14,351,054 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	16,690,052 - 16,741,408 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STUM
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	3,148,091 - 3,206,855 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	3,148,972 - 3,205,407 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	3,147,850 - 3,211,828 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stum
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	588,350 - 632,510 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624807	588,322 - 637,758 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Stum
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	58,771,647 - 58,822,365 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Stum
451 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	55
Count of miRNA genes:	50
Interacting mature miRNAs:	55
Transcripts:	ENSRNOT00000057735
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

AU046329

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	94,756,794 - 94,756,972 (+)	Marker Load Pipeline
mRatBN7.2	13	92,224,894 - 92,225,072 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	98,770,857 - 98,771,034	NCBI	Rnor6.0
Rnor_5.0	13	103,778,464 - 103,778,641	UniSTS	Rnor5.0
RGSC_v3.4	13	96,201,942 - 96,202,119	UniSTS	RGSC3.4
Celera	13	91,772,806 - 91,772,983	UniSTS
Cytogenetic Map	13	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	61	161	76	74	45	81	45	6	317	175	11	140	73	91	29	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003752683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000057735 ⟹ ENSRNOP00000054547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	98,724,295 - 98,772,968 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097375 ⟹ ENSRNOP00000096992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	92,173,544 - 92,227,213 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102467 ⟹ ENSRNOP00000084651

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	92,173,544 - 92,227,213 (-)	Ensembl

RefSeq Acc Id:

XM_006250416 ⟹ XP_006250478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	94,704,074 - 94,759,097 (-)	NCBI
mRatBN7.2	13	92,172,175 - 92,227,205 (-)	NCBI
Rnor_6.0	13	98,722,847 - 98,773,172 (-)	NCBI
Rnor_5.0	13	103,730,941 - 103,781,135 (-)	NCBI

Sequence:

show sequence

GCTGTCACAAAGTGTCACGCTGCCCCTCCCGCCCTCCGCCCGGAGTGGGGGCGTGGAGCGCGGG
AGGGCGGGCTTCTCCGCCAGCCTCACAGCACCCGGAGCGCACTGGCCTCCTGAGAAGGGCGCAT
TGCGCGCAGCCCGGAGCCCGCAGCCGGCCGTCGTCTGCCCTGGTGCCCTGGGCGGCTGCCGGGT
TCCTGGAGAGCGCGTCCAGCCATGGAGCCTTTGCACAAAGACGCTGAGACTGCGGCGGCGGCGG
CGGCGGTGGCAGCGGCAGATCCCCGGGGGGCATCGTCGTCCAGTGGGGTGGTCGTGCAGGTTCG
CGAGAAGAAGGGACCCCTGCGTGCCGCCATCCCCTACATGCCCTTCCCGGTGGCTGTCATCTGT
CTTTTCCTCAACACTTTCGTGCCGGGATTGGGAACATTCGTCTCGGCCTTCACTGTGCTGTGTG
GGGCACGCACCGACCTCCCGGACAGGCACGTGTGCTGCGTCTTCTGGCTGAATATCGCTGCGGC
CCTCATTCAGGTGCTCACGGCCATCGTCATGGTGGGCTGGATCATGAGCATCTTCTGGGGCATG
GATATGGTCATCCTTGCCAGGTACAAGGATCAGGCTATCCCACAACAGCTGTGAGCTTACAGGA
CCTGCCAGGAAAGTCCAGGGTCCCGTGAGGGCTGCGCCAGGAGGCTCCGGGCACAAGGACCTTC
ACATATTCTCTTCTGCCATTTCTCAGATTGGAGTAGAGAGGGAGTACTTACAAAATATTATTTA
TTTTGGAAAACACACCTGCTTTTCTTAGCAGGCTCTGAGGCTGTCTTCTCTCTCCCTGTCCCAG
AGTGCATGGGAGGAACAGGCCAAGAGCATCGGGACTGGGTTAGAGGCGTGATAGCGACCCGGTG
CAAGGGATGCTGGGTATGCTTATTCACCTGCACTCTGAACAGGCACCCGGACCTGCCAGGCTGG
GCTGCTGTAGGTCCCGTGCAGGTGACCAGTCACTCTCCCAGGCGTCGGGACTTCATGGAACACT
TACTTCCTCTGTGTCCTCACGCCCTGCTCAACCATGTGGTTCCCTGTGTTTGCTCTGTGGTCTC
CCAGGGAGTGTATCAGAGTCGGGGTTGCCAGTGTGGAAAGGCCAGGTGATAGCCCAGTGTGGAA
AAGTCCTTGGGTGGCCCTCTCCCCCATGAAATCTGTTGATACCCCAGCGTCTGAGTTGCTGGGT
GTGCGTGTGACTTTGTGACCTGCCTTGGGGGTGGCACCCACTCCACTTCTGGGGTGTCACTGCC
CGTGTTCGGATGTTTATGTGCAAAATGACCAGACTGAGTTATGAATGGCTGCAGACCAGCAGCC
TTCTTGGAAACATTTATTACTGTGTCTGGTCCCTCGCCGTCTCTGGATCCCCTCTCCCTTTTTT
TCCTGACATCCACGTGTTTCTGAATCCAGATGGTTTGTTTTGAGGAAGAGGATGGTATCCATTC
ATTAGTGTTTCCTGACTTCCCAGCGGAGTCTGGGCTTCCCCCACCCCCCGACGCCACACATGTG
GATATCACCAGAGAACCCTGTGAACGGTCAGATGTGTTGAGACTCAAGTCCTGAGGGACATTGG
AGCCTGGACTGCACTTGAACTGTGAGACCTGCAGAGTGACATCATGAAGTTGGGGACTTTGACC
TGAAATTCATACTTGCTGCAAGAAGACAGTTGTCAGCATAGCAGTACCCCCTTTAAGCAGCGAA
CCTGGGACTGATCAGTACAGAGCTTGATCCTTACTAGGCAGAGAAAGCAACAGAAAGTGTGAAG
GCACCCATCTGAAATTAAGAGAAAGGCGGACCCAAACTGATGGCAGTGGGGTGGCTAATTATAT
CTCTCTCCATTCTCATTCTAACGTAGGAAGCGCTAACATGTGGGACAGGCCCAGGGCTCAGTTC
CCGGTCACACTGGCCTTGAGCCACCAGTGAGTCCCTCTTGGAGAATCTCTTATCATCTGCCTGA
GGCTCTGTCGAAGTGTGGAAAGGAGCCGTCCACTTTCTGCCTTGGTGGAGGGAGGCTCTTGAAA
AGCAGCTCCCGTTTCACTGGAGTTCCGGCCTCCTGCCAGTCTTCTTAATTGGAATCCTTGGAAG
CTGGCCCCCAACTGGACAGCTCCTGACATCATGAAGAGATATTGTAGTCCCATGAAGTACTCAC
TCCTGGCCCTGACTCTGGGCTGGCTTGCCTCTCCTATCCTGTGTCTACCCATGAGTTTCTTCCA
TGGCTGTGTGGGATCCAGTTGTACCTTTGGAACGCT

hide sequence

Protein Sequences


Protein RefSeqs	XP_006250478	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94826	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000099244.1
	ENSRNOP00000104207.1
	ENSRNOP00000107824
	ENSRNOP00000107824.1

RefSeq Acc Id:	XP_006250478 ⟸ XM_006250416
- UniProtKB:	D4A4F9 (UniProtKB/TrEMBL), A6JGH0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPLHKDAETAAAAAAVAAADPRGASSSSGVVVQVREKKGPLRAAIPYMPFPVAVICLFLNTFV PGLGTFVSAFTVLCGARTDLPDRHVCCVFWLNIAAALIQVLTAIVMVGWIMSIFWGMDMVILAR YKDQAIPQQL hide sequence

Ensembl Acc Id:

ENSRNOP00000054547 ⟸ ENSRNOT00000057735

Ensembl Acc Id:

ENSRNOP00000084651 ⟸ ENSRNOT00000102467

Ensembl Acc Id:

ENSRNOP00000096992 ⟸ ENSRNOT00000097375

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A4F9-F1-model_v2	AlphaFold	D4A4F9	1-138	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1592263	AgrOrtholog
BioCyc Gene	G2FUF-17124	BioCyc
Ensembl Genes	ENSRNOG00000037960	Ensembl
	ENSRNOG00000071066	Ensembl
	ENSRNOG00000074432	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000158910.1	UniProtKB/TrEMBL
	ENSRNOT00000168828.1	UniProtKB/TrEMBL
	ENSRNOT00000172569	ENTREZGENE
	ENSRNOT00000172569.1	UniProtKB/TrEMBL
InterPro	SPEC3/C1orf95	UniProtKB/TrEMBL
KEGG Report	rno:689499	UniProtKB/TrEMBL
NCBI Gene	689499	ENTREZGENE
PANTHER	PROTEIN STUM HOMOLOG	UniProtKB/TrEMBL
	PTHR21676	UniProtKB/TrEMBL
Pfam	Spec3	UniProtKB/TrEMBL
PhenoGen	Stum	PhenoGen
RatGTEx	ENSRNOG00000037960	RatGTEx
	ENSRNOG00000071066	RatGTEx
	ENSRNOG00000074432	RatGTEx
UniProt	A0ABK0L417_RAT	UniProtKB/TrEMBL
	A0ABK0L5Y2_RAT	UniProtKB/TrEMBL
	A0ABK0LZH3_RAT	UniProtKB/TrEMBL
	A6JGH0	ENTREZGENE, UniProtKB/TrEMBL
	D4A4F9	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	Stum	stum, mechanosensory transduction mediator homolog	Stum	stum, mechanosensory transduction mediator homolog	Data merged from RGD:149736510	737654	PROVISIONAL
2021-08-09	Stum	stum, mechanosensory transduction mediator homolog			Symbol and Name status set to provisional	45752	PROVISIONAL
2016-05-31	Stum	stum, mechanosensory transduction mediator homolog	LOC689499	similar to Y97E10AL.1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC689499	similar to Y97E10AL.1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message