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Gene: Pan3 (poly(A) specific ribonuclease subunit PAN3) Rattus norvegicus

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Symbol:

Pan3

Name:

poly(A) specific ribonuclease subunit PAN3

RGD ID:

1590880

Description:

Predicted to enable poly(A) binding activity. Predicted to contribute to poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within deadenylation-dependent decapping of nuclear-transcribed mRNA; positive regulation of cytoplasmic mRNA processing body assembly; and protein targeting. Predicted to be located in cytoplasm and nucleus. Predicted to be part of PAN complex. Predicted to be active in P-body. Orthologous to human PAN3 (poly(A) specific ribonuclease subunit PAN3); PARTICIPATES IN microRNA pathway; RNA degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC360760; PAB-dependent poly(A)-specific ribonuclease subunit PAN3; PAN2-PAN3 deadenylation complex subunit PAN3; PAN3 poly(A) specific ribonuclease subunit; PAN3 polyA specific ribonuclease subunit homolog; PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae); similar to PABP-dependent poly(A) nuclease 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PAN3 (poly(A) specific ribonuclease subunit PAN3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pan3 (PAN3 poly(A) specific ribonuclease subunit)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pan3 (poly(A) specific ribonuclease subunit PAN3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PAN3 (poly(A) specific ribonuclease subunit PAN3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PAN3 (poly(A) specific ribonuclease subunit PAN3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pan3 (poly(A) specific ribonuclease subunit PAN3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PAN3 (poly(A) specific ribonuclease subunit PAN3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PAN3 (poly(A) specific ribonuclease subunit PAN3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pan3 (poly(A) specific ribonuclease subunit PAN3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pan3 (poly(A) specific ribonuclease subunit PAN3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ERVFRD-1 (endogenous retrovirus group FRD member 1, envelope)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Pan3 (PAN3 poly(A) specific ribonuclease subunit)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PAN3 (poly(A) specific ribonuclease subunit PAN3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pan3 (poly(A) specific ribonuclease subunit PAN3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG11486	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG11486	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PAN3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PAN3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	panl-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	panl-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pan3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	12,512,835 - 12,637,066 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	12,512,835 - 12,631,492 (-)	Ensembl				GRCr8
mRatBN7.2	12	7,476,707 - 7,595,384 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	7,476,697 - 7,599,204 (-)	Ensembl				mRatBN7.2
Rnor_6.0	12	9,214,116 - 9,331,901 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	9,216,536 - 9,331,195 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	11,333,266 - 11,449,831 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	8,046,162 - 8,165,081 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	9,218,136 - 9,336,110 (-)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chrysene (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

folic acid (ISO)

FR900359 (ISO)

hydrogen peroxide (ISO)

irinotecan (ISO)

methapyrilene (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP)

pentanal (ISO)

phenobarbital (ISO)

propiconazole (ISO)

sodium arsenate (ISO)

sunitinib (ISO)

theophylline (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

deadenylation-dependent decapping of nuclear-transcribed mRNA (ISO)

mRNA processing (IEA)

nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (IEA)

nuclear-transcribed mRNA poly(A) tail shortening (IBA,IEA,ISO)

positive regulation of cytoplasmic mRNA processing body assembly (IEA,ISO)

protein targeting (ISO)

Cellular Component

P-body (IBA,IEA,ISO)

PAN complex (IBA,IEA,ISO)

Molecular Function

ATP binding (IEA)

metal ion binding (IEA)

nucleotide binding (IEA)

poly(A) binding (IBA)

poly(A)-specific ribonuclease activity (ISO)

protein binding (ISO)

protein kinase activity (IEA)

RNA binding (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

microRNA pathway (ISO)

RNA degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes.	Wahle E and Winkler GS, Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):561-70. doi: 10.1016/j.bbagrm.2013.01.003. Epub 2013 Jan 19.

Additional References at PubMed

PMID:12477932	PMID:14583602	PMID:18625844

Genomics

Comparative Map Data

Pan3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	12,512,835 - 12,637,066 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	12,512,835 - 12,631,492 (-)	Ensembl				GRCr8
mRatBN7.2	12	7,476,707 - 7,595,384 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	7,476,697 - 7,599,204 (-)	Ensembl				mRatBN7.2
Rnor_6.0	12	9,214,116 - 9,331,901 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	9,216,536 - 9,331,195 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	11,333,266 - 11,449,831 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	8,046,162 - 8,165,081 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	9,218,136 - 9,336,110 (-)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

PAN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	28,138,193 - 28,295,335 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	28,138,207 - 28,295,335 (+)	Ensembl			hg38	GRCh38
GRCh37	13	28,712,682 - 28,869,472 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	27,646,417 - 27,767,472 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	13	9,787,744 - 9,944,258 (+)	NCBI		Celera
Cytogenetic Map	13	q12.2	NCBI
HuRef	13	9,533,856 - 9,690,407 (+)	NCBI		HuRef
CHM1_1	13	28,681,211 - 28,837,730 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	27,361,098 - 27,517,568 (+)	NCBI		T2T-CHM13v2.0

Pan3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	147,363,018 - 147,485,310 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	147,366,971 - 147,485,312 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	147,426,208 - 147,548,501 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	147,430,161 - 147,548,502 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	148,242,156 - 148,360,077 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	147,741,238 - 147,858,845 (+)	NCBI		MGSCv36	mm8
Celera	5	145,424,005 - 145,541,898 (+)	NCBI		Celera
Cytogenetic Map	5	G3	NCBI
cM Map	5	86.93	NCBI

Pan3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955497	7,500,748 - 7,647,255 (+)	Ensembl
ChiLan1.0	NW_004955497	7,500,478 - 7,646,541 (+)	NCBI	ChiLan1.0	ChiLan1.0

PAN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	27,723,636 - 27,886,390 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	18,827,987 - 18,990,992 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	9,420,405 - 9,579,859 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	27,797,325 - 27,921,266 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	27,798,607 - 27,921,266 (+)	Ensembl			panPan2	panpan1.1

PAN3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	11,416,321 - 11,550,830 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	11,417,657 - 11,550,810 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	11,479,225 - 11,613,731 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	11,544,373 - 11,678,148 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	11,545,635 - 11,678,130 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	11,440,197 - 11,574,226 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	11,432,789 - 11,566,165 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	11,474,666 - 11,609,590 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pan3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	172,518,051 - 172,654,798 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	23,297,847 - 23,431,982 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	23,297,679 - 23,434,107 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PAN3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	5,487,138 - 5,614,452 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	11	5,487,019 - 5,614,458 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	5,173,907 - 5,301,062 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PAN3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	7,249,596 - 7,405,770 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	7,249,298 - 7,405,910 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666057	36,983,767 - 37,141,534 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pan3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	10,227,308 - 10,364,522 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624776	10,224,772 - 10,364,816 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pan3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	6,298,342 - 6,413,677 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pan3
1333 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	166
Count of miRNA genes:	122
Interacting mature miRNAs:	134
Transcripts:	ENSRNOT00000001250, ENSRNOT00000044134, ENSRNOT00000071838
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	5921918	25247790	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	1	29775522	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1357337	Gluco3	Glucose level QTL 3		0.0004	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	12	1	16966671	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	11869600	16966542	Rat
61334	Gluco17	Glucose level QTL 17	6.3		adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	12	1	16966671	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28133365	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	12233000	30490641	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	28606299	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
724526	Uae3	Urinary albumin excretion QTL 3	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	12	1	15486827	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	1	24849755	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303568	Bw88	Body weight QTL 88	3		body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28606299	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

SGC34512

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	7,476,740 - 7,476,874 (+)	MAPPER	mRatBN7.2
mRatBN7.2	4	24,652,330 - 24,652,466 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,603,013 - 21,603,148	NCBI	Rnor6.0
Rnor_6.0	12	9,214,146 - 9,214,279	NCBI	Rnor6.0
Rnor_5.0	12	11,333,300 - 11,333,433	UniSTS	Rnor5.0
Rnor_5.0	4	21,535,195 - 21,535,330	UniSTS	Rnor5.0
RGSC_v3.4	4	22,160,538 - 22,160,673	UniSTS	RGSC3.4
RGSC_v3.4	12	8,046,196 - 8,046,329	UniSTS	RGSC3.4
Celera	12	9,218,170 - 9,218,303	UniSTS
Celera	4	20,152,579 - 20,152,714	UniSTS
Cytogenetic Map	4	q12	UniSTS
Cytogenetic Map	12	p11	UniSTS

RH132266

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	7,476,782 - 7,476,979 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	9,214,188 - 9,214,384	NCBI	Rnor6.0
Rnor_5.0	12	11,333,342 - 11,333,538	UniSTS	Rnor5.0
RGSC_v3.4	12	8,046,238 - 8,046,434	UniSTS	RGSC3.4
Celera	12	9,218,212 - 9,218,408	UniSTS
Cytogenetic Map	12	p11	UniSTS

RH143488

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	7,489,650 - 7,489,751 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	9,227,053 - 9,227,153	NCBI	Rnor6.0
Rnor_5.0	12	11,346,207 - 11,346,307	UniSTS	Rnor5.0
RGSC_v3.4	12	8,059,103 - 8,059,203	UniSTS	RGSC3.4
Celera	12	9,231,077 - 9,231,177	UniSTS
RH 3.4 Map	12	89.74	UniSTS
Cytogenetic Map	12	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001419788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001068449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_346914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC103655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000044134 ⟹ ENSRNOP00000040388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	12,512,835 - 12,631,492 (-)	Ensembl
mRatBN7.2 Ensembl	12	7,476,697 - 7,599,204 (-)	Ensembl
Rnor_6.0 Ensembl	12	9,216,536 - 9,331,195 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083249 ⟹ ENSRNOP00000076931

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	12,512,835 - 12,631,492 (-)	Ensembl
mRatBN7.2 Ensembl	12	7,476,697 - 7,599,204 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125544 ⟹ ENSRNOP00000106896

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	12,513,877 - 12,631,492 (-)	Ensembl

RefSeq Acc Id:

NM_001419788 ⟹ NP_001406717

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,631,492 (-)	NCBI
mRatBN7.2	12	7,476,711 - 7,595,384 (-)	NCBI

RefSeq Acc Id:

XM_006248842 ⟹ XP_006248904

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,637,066 (-)	NCBI
mRatBN7.2	12	7,476,707 - 7,595,379 (-)	NCBI
Rnor_6.0	12	9,214,116 - 9,331,897 (-)	NCBI
Rnor_5.0	12	11,333,266 - 11,449,831 (-)	NCBI

Sequence:

show sequence

TCAGGAAGAGGAAAATGGAATAAACAACTCGGAGGAACCGGAGCGCGAGACGACGAGCGGAGGC
AGAGTTTAAAAACAAACCGGCTCCCTCCGCCGTGCCTTACCCCCCAGCTTCCGGTCGCCGTCCG
CCTCAGGGTCTCCTGCAGCCCCGGCCACGCGCCCACCGCGGCGTCCCGCGCGGCCCCTTTAAGG
ACAGCGGAGAGGGAGAGGGAGAATCCCTACTCGCCGCCCGCCCCTCCCCCTCCCCGGGCGGCTC
CGGCTCCCTCAGCGGGCCCAACCCGCCCGCCCGGCTTCCATCCGGCTCCGGCGGCGGCTCCTTC
CCGCCCTCGTCTATGGTGGCGGCGGCGGGGGACGCGGCTGCGGCGTGGCCATGAACAGTGGCGG
CGGCCTTCCGCCCCCCTCGGCCGCCGCCTCCCCGTCGTCCTCCTCGCTGGCGGCGGCCGTGGCG
GTCGCGGTCGCGGCCTCGTCGGGCGTCGGGGGCGTCCCCGGCGGGCCGGCTGCGGGCGTGAAGC
TCAAGTACTGCCGCTACTACGCCAAGGACAAGACGTGCTTCTACGGAGAGGAGTGTCAGTTCCT
GCACGAGGACCCGGCCTCCGGCGCGGCTCCGGGGCTCGGCCTCCATAGCAACAGCGTCCCGCTG
GCGCTGGCGGCCGCGTCGGGGGCCGGCTTTCCTCCCGGAGCGCTCCCGGGCGGGGGAGCGGGGC
CGCCCGCGGGGCCCAAGAAGCCGGAGCTGGGCGTCCCGGGGGCGGCGACAGCGGGCGGCGGACT
CGATGGACCGCGGGTGGCGATTCCCGGAATGGATGGAGGTGCTTTAACTGACACAAGCCTCACA
GATTCCTATTTCAGCACCAGCTTCATTGGAGTGAATGGATTTGGAAGCCCGGTAGAAACAAAGT
ATCCCTTGATGCAGAGAATGACTAGTAGTAGCAGCTCCCCAAGCCTTCTAAATGACAGTGCCAA
GCCATACACAGGCCACGATCCTCTGACTTCATCTGCTTCATCCTTGTTTAATGACTTCGGTGCC
CTCAACATCTCCCAGAGAAGGAAGCCAAGGAAGTATCGCCTGGGGATGCTGGAGGAGAGGCTAG
TTCCGATGGGATCCAAGGCACGAAAAGCAAAGAACCCTATTGGCTGCCTTGCTGACAGGTGTAA
ATCAGGAGTACCCATCAATATGGTTTGGTGGAACAGAGTCACAGAAAACAATTTACAGACACCA
AATCCTACTGCAAGCGAATTTATACCTAAAGGAGGATCAACCTCCAGGCTGAGTAACGTGTCCC
AGTCAAATATGTCTGCCTTCTCTCAAGTTTTCTCTCACCCATCCATGGGAAGTCCTGCTACTGC
TGGATTAGCACCAGGAATGTCACTGTCTGCTGGATCTTCCCCTCTCCATTCCCCCAAAATTACT
CCACACACCTCTCCTGCTCCTAGAAGAAGAAGCCACACTCCAAACCCAGCAAGTTTCATGGTGC
CGCCTAGTGCCTCCACTCCTGCCAATAACCCTGTTCCTCAGACTCCGTCCTCTGGTCAAGTGAT
CCAGAAGGAGACTGTCGGGGGGACGACTTACTTCTATACAGATACAACTCCAGCACCTTTGACT
GGAATGGTATTTCCAAACTATCATATTTACCCACCAACTGCACCTCATGTTGCTTACATGCAAC
CCAAAGCAAACGCACCTTCCTTCTTCATGGCCGACGAGCTCCGACAGGAGCTGATCAACAGACA
TTTAATAACAATGGCTCAGATTGATCAAGCAGATCTGCCAGCAGTCCCTACAGAAGTTGACAGC
TACCATAGTCTGTTCCCTCTAGAACCACTGCCACCCCCAAACCGGATACAGAAATCAAGTAATT
TTGGATATATCACATCTTGCTACAAAGCTGTAAATAGCAAAGATGATTTGCCATATTGCCTTCG
AAGGATACATGGTTTTCGTCTTGTTAACACAAAGTGCATGGTGTTGGTTGATATGTGGAAAAAA
ATTCAGCACTCAAATATTGTAACTCTGCGTGAAGTGTTTACCACTAAAGCATTTTCCGAGCCTT
CTCTTGTGTTCGCGTATGATTTCCATGCTGGAGGAGAAACTATGATGAGCAGACACTTTAATGA
CCCAAATTCTGACGCTTACTTCACAAAGAGAAAGTGGGGCCAGCATGATGGACCGCTGCCCAGG
CAGCATGCTGGGTTGTTGCCAGAGTCTCTCATTTGGGCATATATTGTCCAGCTGAGTTCTGCTC
TGCGTACCATTCATACAGCAGGGTTGGCATGTAGAGTAATGGACCCAACGAAGATTCTGATAAC
CAGCAAAACAAGGTTACGAGTAAATTGTGTAGGAGTTTTTGATGTTTTAACATTTGATAACAGT
CAAAATAATAATCCTTTGGCGTTAATGGCTCAATACCAGCAAGCAGATCTGATATCATTAGGAA
AAGTTGTGTTGGCTTTGGCTTGCAACTCTTTGGCAGGAATTCAACGAGAAAATTTACAGAAAGC
CATGGAATTGGTGACAATCAACTACTCCTCTGACCTGAAGAACCTCATCTTGTACTTGTTGACT
GACCAAAACAGGATGCGGAGTGTGAATGACATCATGCCCATGATTGGTGCTCGGTTTTACACTC
AACTGGATGCTGCTCAAATGAGAAATGATGTTATCGAGGAAGACCTTGCTAAGGAGGTTCAAAA
TGGAAGACTGTTTAGGCTTCTAGCAAAATTGGGAACAATCAACGAGAGACCAGAGTTTCAGAAG
GATCCAACTTGGTCAGAGACTGGAGACCGGTATTTGTTGAAACTCTTCAGGGATCATCTTTTTC
ATCAGGTGACAGAAGCAGGTGCTCCCTGGATCGACCTCAGTCACATCATTTCTTGTCTTAACAA
GCTGGATGCCGGTGTGCCAGAAAAGATAAGCCTGACCTCCAGGGACGAGAAGAGCGTGCTGGTG
GTGACGTACAGTGACCTAAAACGCTGCTTCGAAAATACCTTTCAGGAACTGATTGCGGCTGCCA
ATGGTAACGATCGGAGCAGTAACTGAAGGAGCAGGCGCTGCTCTTCTCCAGGTTCATCCAGAGG
CTTCTTCAGAGAGGCGTCTGCCTGCCAGTCACATACACTTAGATTGACGTAATTTTTAATAGCA
AAATGAAATTGTGCTGAAGGCCTGAAAGTTGAGGAGTTACATTACTTTAGGGTCTTTCCAGTTT
GCTTTTTCCCTTTGAACTCCAGCTTTATAATGGTACTTACACTGGATCTGGACTCACTGTCGAG
AGAGAAGGTGGGCTGAGCACAGCAGTGGCCTGATGCTTTGCGGCCTGGCTCTGGAGGACACTTT
CCTGCTGTGCCTTTGCACTCACTGCTTAACCCAAAGTAACAGGACTTTCGGTCATCTGAGAAGG
CCATCTCAAAAGTTGCAGTTTTCTTCCTTGGAACTTTCTTACTATTTGGACATGCAGTTGTCGC
CAAACTCAAGTATTTGTGGGACTTGTGGTCACTTCGATACTGAAGACTGCCAAATACATTGGGA
TTTTCTCCTACACAGCCGCCATGAAGACTCCATCTCCTTCCCCGAGCCGCGTGCTGAGCGCGCA
CTGGGTGTGCACCGCAGAGCTGGGAAGAAAGTGTGGGGACTCAGAGGGTCGGGACGGACTCCCA
AGCACTTGCAACTGATGTTACTGTCTTCGTTTTTAACAAGTACACCTATTTGTATATTTCAGAG
AAGTTTTTAACATTTCTCTGTCCACTTTTTATAAGCTTTAAAATGATTTTTCTCTGCCTTGAGA
TTTGCATCAAGAAAAAGCACCTTTCTTCACCGAAAGCTTTGAGGACTAGAGACACACTTCACAC
GTCTAACAAGCACGTCTGCGTCCGCGAGCGGTAGCATCAGTCGTTAACAAGAAAATTAATTATT
GCATTTGATCTGGATGGATTTTAAAAGAACATAATGTTCAATATTCAAAGGATAATGACCATTT
GCCACCATGATGTTCCTTTTATTTAAAGGGAACAAGAACTTTGAGTGTAACACACAGAAGTCTT
TATCATTAGCTCATGTATTGAGGAAGAGCAGCTGTCTTTTTATATGTTTTTTGACAAATCATAT
TGTAATTCTTTTGTACAAAAAAGAACTACTTGTATTCTAGAAGAAATATGAAATGCTTAATTTA
TAAGCGGGCTGGAGATTTTTTTCCAATATTGTTTTCTTTGAAAATGAAAGGGGATCATCTATTT
TAGTTTTTGGGGGCCTGGGAACTTTTTGAAAATTTTCATTTGTGGACCAATGTTATGTGAATGC
TAAAGAAGGGCAGGGGTAAAATAGGGCTTGAATCTCTTGTTCCGCATAGACCAGCAAACTCCCC
TCTGCAAGGCAGGTTCACATCACAACCCCAGAGAGTCTGCATCAGAAACGCTAGTTTGCTTCAG
CCCCTGGTAACCTCAGGACTTGGTGTGGGTATAAAAGGTAGTCAGCTGAAAGTTTTCATAAGTA
AATATTGTCAGCCAGAAAACAGTTGGTGTCAGGTAATGCACATTTTTTTAGCTTTGTTTTATAT
TTATTTTCATTGGGAATGGTTTTCAAAAGAATTCTTGAGTTCTCTGCTTTGATAGGTTTCTTTC
TTTCTTTTTTTCTTTTTTCCGTTTTTTTGTTTTGCTTTGCTTTTTTTTCTGGGAGCCCTCTGTT
CCACGGTGTAAACCCATATAGGAGGTTGTCTGAAAGTTACTATTCAGTGCATAGGAAGAGTTTA
CTATCTGAGAATATCGAATGAAGGACGTGAACTCACCGTGACTTCCTGTGTGACAACACAACAC
GGAAAGGACAACCCTGAAATCATGTGGTGTCGCTCACCTCAGCTGTGTGCCCATCTCCAATCCC
GTTAGTGTGTTTACTTCATTGCAGATGCCTTTGAGGGAGCCCTCTATTCTGCTTTGACCTTGGT
TCTGTCATGGATAGCAACATTGTCTCTAAAAAGCACCAGTATGTTTAAGTTCTAATGTCACGAT
CCCAGTACCTGTTTCTCATCTTTAACCCTGTTTTCAGTCTCTATGTGTATAGCAGTATTTTTTA
ATAAAGAATTACAGAGATAAA

hide sequence

RefSeq Acc Id:

XM_039089924 ⟹ XP_038945852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,637,066 (-)	NCBI
mRatBN7.2	12	7,476,707 - 7,595,380 (-)	NCBI

RefSeq Acc Id:

XM_039089925 ⟹ XP_038945853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,637,066 (-)	NCBI
mRatBN7.2	12	7,476,707 - 7,595,379 (-)	NCBI

RefSeq Acc Id:

XM_039089926 ⟹ XP_038945854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,630,412 (-)	NCBI
mRatBN7.2	12	7,476,707 - 7,594,173 (-)	NCBI

RefSeq Acc Id:

XM_039089927 ⟹ XP_038945855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,629,228 (-)	NCBI
mRatBN7.2	12	7,476,707 - 7,592,273 (-)	NCBI

RefSeq Acc Id:

XM_039089928 ⟹ XP_038945856

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,567,380 (-)	NCBI
mRatBN7.2	12	7,476,707 - 7,531,262 (-)	NCBI

RefSeq Acc Id:

XM_039089929 ⟹ XP_038945857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,561,839 (-)	NCBI
mRatBN7.2	12	7,476,707 - 7,525,721 (-)	NCBI

RefSeq Acc Id:

XM_039089930 ⟹ XP_038945858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,610,242 (-)	NCBI
mRatBN7.2	12	7,476,707 - 7,574,120 (-)	NCBI

RefSeq Acc Id:

XM_063271439 ⟹ XP_063127509

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,637,066 (-)	NCBI

RefSeq Acc Id:

XM_063271441 ⟹ XP_063127511

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,567,376 (-)	NCBI

RefSeq Acc Id:

XM_346914 ⟹ XP_346915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,512,835 - 12,637,066 (-)	NCBI
mRatBN7.2	12	7,476,707 - 7,595,378 (-)	NCBI
Rnor_6.0	12	9,214,116 - 9,331,896 (-)	NCBI
Rnor_5.0	12	11,333,266 - 11,449,831 (-)	NCBI
RGSC_v3.4	12	8,046,162 - 8,165,081 (-)	RGD

Sequence:

show sequence

CAGGAAGAGGAAAATGGAATAAACAACTCGGAGGAACCGGAGCGCGAGACGACGAGCGGAGGCA
GAGTTTAAAAACAAACCGGCTCCCTCCGCCGTGCCTTACCCCCCAGCTTCCGGTCGCCGTCCGC
CTCAGGGTCTCCTGCAGCCCCGGCCACGCGCCCACCGCGGCGTCCCGCGCGGCCCCTTTAAGGA
CAGCGGAGAGGGAGAGGGAGAATCCCTACTCGCCGCCCGCCCCTCCCCCTCCCCGGGCGGCTCC
GGCTCCCTCAGCGGGCCCAACCCGCCCGCCCGGCTTCCATCCGGCTCCGGCGGCGGCTCCTTCC
CGCCCTCGTCTATGGTGGCGGCGGCGGGGGACGCGGCTGCGGCGTGGCCATGAACAGTGGCGGC
GGCCTTCCGCCCCCCTCGGCCGCCGCCTCCCCGTCGTCCTCCTCGCTGGCGGCGGCCGTGGCGG
TCGCGGTCGCGGCCTCGTCGGGCGTCGGGGGCGTCCCCGGCGGGCCGGCTGCGGGCGTGAAGCT
CAAGTACTGCCGCTACTACGCCAAGGACAAGACGTGCTTCTACGGAGAGGAGTGTCAGTTCCTG
CACGAGGACCCGGCCTCCGGCGCGGCTCCGGGGCTCGGCCTCCATAGCAACAGCGTCCCGCTGG
CGCTGGCGGCCGCGTCGGGGGCCGGCTTTCCTCCCGGAGCGCTCCCGGGCGGGGGAGCGGGGCC
GCCCGCGGGGCCCAAGAAGCCGGAGCTGGGCGTCCCGGGGGCGGCGACAGCGGGCGGCGGACTC
GATGGACCGCGGGTGGCGATTCCCGGAATGGATGGAGGTGCTTTAACTGACACAAGCCTCACAG
ATTCCTATTTCAGCACCAGCTTCATTGGAGTGAATGGATTTGGAAGCCCGGTAGAAACAAAGTA
TCCCTTGATGCAGAGAATGACTAGTAGTAGCAGCTCCCCAAGCCTTCTAAATGACAGTGCCAAG
CCATACACAGGCCACGATCCTCTGACTTCATCTGCTTCATCCTTGTTTAATGACTTCGGTGCCC
TCAACATCTCCCAGAGAAGGAAGACACCAAATCCTACTGCAAGCGAATTTATACCTAAAGGAGG
ATCAACCTCCAGGCTGAGTAACGTGTCCCAGTCAAATATGTCTGCCTTCTCTCAAGTTTTCTCT
CACCCATCCATGGGAAGTCCTGCTACTGCTGGATTAGCACCAGGAATGTCACTGTCTGCTGGAT
CTTCCCCTCTCCATTCCCCCAAAATTACTCCACACACCTCTCCTGCTCCTAGAAGAAGAAGCCA
CACTCCAAACCCAGCAAGTTTCATGGTGCCGCCTAGTGCCTCCACTCCTGCCAATAACCCTGTT
CCTCAGACTCCGTCCTCTGGTCAAGTGATCCAGAAGGAGACTGTCGGGGGGACGACTTACTTCT
ATACAGATACAACTCCAGCACCTTTGACTGGAATGGTATTTCCAAACTATCATATTTACCCACC
AACTGCACCTCATGTTGCTTACATGCAACCCAAAGCAAACGCACCTTCCTTCTTCATGGCCGAC
GAGCTCCGACAGGAGCTGATCAACAGACATTTAATAACAATGGCTCAGATTGATCAAGCAGATC
TGCCAGCAGTCCCTACAGAAGTTGACAGCTACCATAGTCTGTTCCCTCTAGAACCACTGCCACC
CCCAAACCGGATACAGAAATCAAGTAATTTTGGATATATCACATCTTGCTACAAAGCTGTAAAT
AGCAAAGATGATTTGCCATATTGCCTTCGAAGGATACATGGTTTTCGTCTTGTTAACACAAAGT
GCATGGTGTTGGTTGATATGTGGAAAAAAATTCAGCACTCAAATATTGTAACTCTGCGTGAAGT
GTTTACCACTAAAGCATTTTCCGAGCCTTCTCTTGTGTTCGCGTATGATTTCCATGCTGGAGGA
GAAACTATGATGAGCAGACACTTTAATGACCCAAATTCTGACGCTTACTTCACAAAGAGAAAGT
GGGGCCAGCATGATGGACCGCTGCCCAGGCAGCATGCTGGGTTGTTGCCAGAGTCTCTCATTTG
GGCATATATTGTCCAGCTGAGTTCTGCTCTGCGTACCATTCATACAGCAGGGTTGGCATGTAGA
GTAATGGACCCAACGAAGATTCTGATAACCAGCAAAACAAGGTTACGAGTAAATTGTGTAGGAG
TTTTTGATGTTTTAACATTTGATAACAGTCAAAATAATAATCCTTTGGCGTTAATGGCTCAATA
CCAGCAAGCAGATCTGATATCATTAGGAAAAGTTGTGTTGGCTTTGGCTTGCAACTCTTTGGCA
GGAATTCAACGAGAAAATTTACAGAAAGCCATGGAATTGGTGACAATCAACTACTCCTCTGACC
TGAAGAACCTCATCTTGTACTTGTTGACTGACCAAAACAGGATGCGGAGTGTGAATGACATCAT
GCCCATGATTGGTGCTCGGTTTTACACTCAACTGGATGCTGCTCAAATGAGAAATGATGTTATC
GAGGAAGACCTTGCTAAGGAGGTTCAAAATGGAAGACTGTTTAGGCTTCTAGCAAAATTGGGAA
CAATCAACGAGAGACCAGAGTTTCAGAAGGATCCAACTTGGTCAGAGACTGGAGACCGGTATTT
GTTGAAACTCTTCAGGGATCATCTTTTTCATCAGGTGACAGAAGCAGGTGCTCCCTGGATCGAC
CTCAGTCACATCATTTCTTGTCTTAACAAGCTGGATGCCGGTGTGCCAGAAAAGATAAGCCTGA
CCTCCAGGGACGAGAAGAGCGTGCTGGTGGTGACGTACAGTGACCTAAAACGCTGCTTCGAAAA
TACCTTTCAGGAACTGATTGCGGCTGCCAATGGTAACGATCGGAGCAGTAACTGAAGGAGCAGG
CGCTGCTCTTCTCCAGGTTCATCCAGAGGCTTCTTCAGAGAGGCGTCTGCCTGCCAGTCACATA
CACTTAGATTGACGTAATTTTTAATAGCAAAATGAAATTGTGCTGAAGGCCTGAAAGTTGAGGA
GTTACATTACTTTAGGGTCTTTCCAGTTTGCTTTTTCCCTTTGAACTCCAGCTTTATAATGGTA
CTTACACTGGATCTGGACTCACTGTCGAGAGAGAAGGTGGGCTGAGCACAGCAGTGGCCTGATG
CTTTGCGGCCTGGCTCTGGAGGACACTTTCCTGCTGTGCCTTTGCACTCACTGCTTAACCCAAA
GTAACAGGACTTTCGGTCATCTGAGAAGGCCATCTCAAAAGTTGCAGTTTTCTTCCTTGGAACT
TTCTTACTATTTGGACATGCAGTTGTCGCCAAACTCAAGTATTTGTGGGACTTGTGGTCACTTC
GATACTGAAGACTGCCAAATACATTGGGATTTTCTCCTACACAGCCGCCATGAAGACTCCATCT
CCTTCCCCGAGCCGCGTGCTGAGCGCGCACTGGGTGTGCACCGCAGAGCTGGGAAGAAAGTGTG
GGGACTCAGAGGGTCGGGACGGACTCCCAAGCACTTGCAACTGATGTTACTGTCTTCGTTTTTA
ACAAGTACACCTATTTGTATATTTCAGAGAAGTTTTTAACATTTCTCTGTCCACTTTTTATAAG
CTTTAAAATGATTTTTCTCTGCCTTGAGATTTGCATCAAGAAAAAGCACCTTTCTTCACCGAAA
GCTTTGAGGACTAGAGACACACTTCACACGTCTAACAAGCACGTCTGCGTCCGCGAGCGGTAGC
ATCAGTCGTTAACAAGAAAATTAATTATTGCATTTGATCTGGATGGATTTTAAAAGAACATAAT
GTTCAATATTCAAAGGATAATGACCATTTGCCACCATGATGTTCCTTTTATTTAAAGGGAACAA
GAACTTTGAGTGTAACACACAGAAGTCTTTATCATTAGCTCATGTATTGAGGAAGAGCAGCTGT
CTTTTTATATGTTTTTTGACAAATCATATTGTAATTCTTTTGTACAAAAAAGAACTACTTGTAT
TCTAGAAGAAATATGAAATGCTTAATTTATAAGCGGGCTGGAGATTTTTTTCCAATATTGTTTT
CTTTGAAAATGAAAGGGGATCATCTATTTTAGTTTTTGGGGGCCTGGGAACTTTTTGAAAATTT
TCATTTGTGGACCAATGTTATGTGAATGCTAAAGAAGGGCAGGGGTAAAATAGGGCTTGAATCT
CTTGTTCCGCATAGACCAGCAAACTCCCCTCTGCAAGGCAGGTTCACATCACAACCCCAGAGAG
TCTGCATCAGAAACGCTAGTTTGCTTCAGCCCCTGGTAACCTCAGGACTTGGTGTGGGTATAAA
AGGTAGTCAGCTGAAAGTTTTCATAAGTAAATATTGTCAGCCAGAAAACAGTTGGTGTCAGGTA
ATGCACATTTTTTTAGCTTTGTTTTATATTTATTTTCATTGGGAATGGTTTTCAAAAGAATTCT
TGAGTTCTCTGCTTTGATAGGTTTCTTTCTTTCTTTTTTTCTTTTTTCCGTTTTTTTGTTTTGC
TTTGCTTTTTTTTCTGGGAGCCCTCTGTTCCACGGTGTAAACCCATATAGGAGGTTGTCTGAAA
GTTACTATTCAGTGCATAGGAAGAGTTTACTATCTGAGAATATCGAATGAAGGACGTGAACTCA
CCGTGACTTCCTGTGTGACAACACAACACGGAAAGGACAACCCTGAAATCATGTGGTGTCGCTC
ACCTCAGCTGTGTGCCCATCTCCAATCCCGTTAGTGTGTTTACTTCATTGCAGATGCCTTTGAG
GGAGCCCTCTATTCTGCTTTGACCTTGGTTCTGTCATGGATAGCAACATTGTCTCTAAAAAGCA
CCAGTATGTTTAAGTTCTAATGTCACGATCCCAGTACCTGTTTCTCATCTTTAACCCTGTTTTC
AGTCTCTATGTGTATAGCAGTATTTTTTAATAAAGAATTACAGAGATAAA

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RefSeq Acc Id:

XR_010056399

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	12,520,586 - 12,637,066 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001406717	(Get FASTA)	NCBI Sequence Viewer
	XP_006248904	(Get FASTA)	NCBI Sequence Viewer
	XP_038945852	(Get FASTA)	NCBI Sequence Viewer
	XP_038945853	(Get FASTA)	NCBI Sequence Viewer
	XP_038945854	(Get FASTA)	NCBI Sequence Viewer
	XP_038945855	(Get FASTA)	NCBI Sequence Viewer
	XP_038945856	(Get FASTA)	NCBI Sequence Viewer
	XP_038945857	(Get FASTA)	NCBI Sequence Viewer
	XP_038945858	(Get FASTA)	NCBI Sequence Viewer
	XP_063127509	(Get FASTA)	NCBI Sequence Viewer
	XP_063127511	(Get FASTA)	NCBI Sequence Viewer
	XP_346915	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000040388
	ENSRNOP00000040388.7
	ENSRNOP00000076931.2
	ENSRNOP00000106896
	ENSRNOP00000106896.1

RefSeq Acc Id:	XP_346915 ⟸ XM_346914
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5Y6J5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSGGGLPPPSAAASPSSSSLAAAVAVAVAASSGVGGVPGGPAAGVKLKYCRYYAKDKTCFYGE ECQFLHEDPASGAAPGLGLHSNSVPLALAAASGAGFPPGALPGGGAGPPAGPKKPELGVPGAAT AGGGLDGPRVAIPGMDGGALTDTSLTDSYFSTSFIGVNGFGSPVETKYPLMQRMTSSSSSPSLL NDSAKPYTGHDPLTSSASSLFNDFGALNISQRRKTPNPTASEFIPKGGSTSRLSNVSQSNMSAF SQVFSHPSMGSPATAGLAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPASFMVPPSASTP ANNPVPQTPSSGQVIQKETVGGTTYFYTDTTPAPLTGMVFPNYHIYPPTAPHVAYMQPKANAPS FFMADELRQELINRHLITMAQIDQADLPAVPTEVDSYHSLFPLEPLPPPNRIQKSSNFGYITSC YKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVDMWKKIQHSNIVTLREVFTTKAFSEPSLVFAYD FHAGGETMMSRHFNDPNSDAYFTKRKWGQHDGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTA GLACRVMDPTKILITSKTRLRVNCVGVFDVLTFDNSQNNNPLALMAQYQQADLISLGKVVLALA CNSLAGIQRENLQKAMELVTINYSSDLKNLILYLLTDQNRMRSVNDIMPMIGARFYTQLDAAQM RNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAG APWIDLSHIISCLNKLDAGVPEKISLTSRDEKSVLVVTYSDLKRCFENTFQELIAAANGNDRSS N hide sequence

RefSeq Acc Id:	XP_006248904 ⟸ XM_006248842
- Peptide Label:	isoform X1
- UniProtKB:	D4ADM2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSGGGLPPPSAAASPSSSSLAAAVAVAVAASSGVGGVPGGPAAGVKLKYCRYYAKDKTCFYGE ECQFLHEDPASGAAPGLGLHSNSVPLALAAASGAGFPPGALPGGGAGPPAGPKKPELGVPGAAT AGGGLDGPRVAIPGMDGGALTDTSLTDSYFSTSFIGVNGFGSPVETKYPLMQRMTSSSSSPSLL NDSAKPYTGHDPLTSSASSLFNDFGALNISQRRKPRKYRLGMLEERLVPMGSKARKAKNPIGCL ADRCKSGVPINMVWWNRVTENNLQTPNPTASEFIPKGGSTSRLSNVSQSNMSAFSQVFSHPSMG SPATAGLAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPASFMVPPSASTPANNPVPQTPS SGQVIQKETVGGTTYFYTDTTPAPLTGMVFPNYHIYPPTAPHVAYMQPKANAPSFFMADELRQE LINRHLITMAQIDQADLPAVPTEVDSYHSLFPLEPLPPPNRIQKSSNFGYITSCYKAVNSKDDL PYCLRRIHGFRLVNTKCMVLVDMWKKIQHSNIVTLREVFTTKAFSEPSLVFAYDFHAGGETMMS RHFNDPNSDAYFTKRKWGQHDGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPT KILITSKTRLRVNCVGVFDVLTFDNSQNNNPLALMAQYQQADLISLGKVVLALACNSLAGIQRE NLQKAMELVTINYSSDLKNLILYLLTDQNRMRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLA KEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHII SCLNKLDAGVPEKISLTSRDEKSVLVVTYSDLKRCFENTFQELIAAANGNDRSSN hide sequence

Ensembl Acc Id:

ENSRNOP00000040388 ⟸ ENSRNOT00000044134

RefSeq Acc Id:	XP_038945852 ⟸ XM_039089924
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038945853 ⟸ XM_039089925
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038945854 ⟸ XM_039089926
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038945855 ⟸ XM_039089927
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038945858 ⟸ XM_039089930
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038945856 ⟸ XM_039089928
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038945857 ⟸ XM_039089929
- Peptide Label:	isoform X9

Ensembl Acc Id:

ENSRNOP00000076931 ⟸ ENSRNOT00000083249

RefSeq Acc Id:

NP_001406717 ⟸ NM_001419788

RefSeq Acc Id:	XP_063127509 ⟸ XM_063271439
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063127511 ⟸ XM_063271441
- Peptide Label:	isoform X9

Ensembl Acc Id:

ENSRNOP00000106896 ⟸ ENSRNOT00000125544

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ADM2-F1-model_v2	AlphaFold	D4ADM2	1-740	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1590880	AgrOrtholog
BioCyc Gene	G2FUF-20120	BioCyc
Ensembl Genes	ENSRNOG00000000942	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000044134	ENTREZGENE
	ENSRNOT00000044134.8	UniProtKB/TrEMBL
	ENSRNOT00000083249.3	UniProtKB/TrEMBL
	ENSRNOT00000125544	ENTREZGENE
	ENSRNOT00000125544.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.3700	UniProtKB/TrEMBL
	1.20.5.5160	UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
InterPro	Kinase-like_dom	UniProtKB/TrEMBL
	PAN3	UniProtKB/TrEMBL
	Pan3_PK	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	Znf_CCCH	UniProtKB/TrEMBL
	Znf_CCCH_sf	UniProtKB/TrEMBL
NCBI Gene	360760	ENTREZGENE
PANTHER	PAN2-PAN3 DEADENYLATION COMPLEX SUBUNIT PAN3	UniProtKB/TrEMBL
	PTHR12272	UniProtKB/TrEMBL
Pfam	Pan3_PK	UniProtKB/TrEMBL
PhenoGen	Pan3	PhenoGen
PROSITE	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	ZF_C3H1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000000942	RatGTEx
SMART	S_TKc	UniProtKB/TrEMBL
	ZnF_C3H1	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
	SSF90229	UniProtKB/TrEMBL
UniProt	A0A8I5Y6J5	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L940_RAT	UniProtKB/TrEMBL
	D4ADM2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-05-04	Pan3	poly(A) specific ribonuclease subunit PAN3	Pan3	PAN3 poly(A) specific ribonuclease subunit	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-04-11	Pan3	PAN3 poly(A) specific ribonuclease subunit	Pan3	PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Pan3	PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)	LOC360760	similar to PABP-dependent poly(A) nuclease 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC360760	similar to PABP-dependent poly(A) nuclease 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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RGD Manual Annotations

Imported Annotations - KEGG (archival)