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Gene: Mrpl40 (mitochondrial ribosomal protein L40) Rattus norvegicus

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Symbol:

Mrpl40

Name:

mitochondrial ribosomal protein L40

RGD ID:

1565444

Description:

Located in mitochondrial ribosome. Orthologous to human MRPL40 (mitochondrial ribosomal protein L40); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4-amino-2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

39S ribosomal protein L40, mitochondrial; L40mt; large ribosomal subunit protein mL40; MRP-L40

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MRPL40 (mitochondrial ribosomal protein L40)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Mrpl40 (mitochondrial ribosomal protein L40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mrpl40 (mitochondrial ribosomal protein L40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MRPL40 (mitochondrial ribosomal protein L40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MRPL40 (mitochondrial ribosomal protein L40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mrpl40 (mitochondrial ribosomal protein L40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MRPL40 (mitochondrial ribosomal protein L40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MRPL40 (mitochondrial ribosomal protein L40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mrpl40 (mitochondrial ribosomal protein L40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Mrpl40 (mitochondrial ribosomal protein L40)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MRPL40 (mitochondrial ribosomal protein L40)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mrpl40 (mitochondrial ribosomal protein L40)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mrpl40 (mitochondrial ribosomal protein L40)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mrpl-40	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mRpL40	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mrpl40	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	95,637,751 - 95,643,587 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	95,637,712 - 95,643,586 (+)	Ensembl				GRCr8
mRatBN7.2	11	82,133,398 - 82,139,234 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	82,133,398 - 82,139,233 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	90,862,860 - 90,868,698 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	83,524,080 - 83,529,918 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	82,577,348 - 82,583,186 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	86,276,616 - 86,282,452 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	86,276,616 - 86,282,451 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	89,378,582 - 89,384,418 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	11	80,914,027 - 80,919,719 (+)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

6-propyl-2-thiouracil (EXP)

aconitine (EXP)

acrylamide (EXP)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

bisphenol A (EXP)

Bisphenol B (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dibutyl phthalate (EXP,ISO)

dorsomorphin (ISO)

doxorubicin (EXP)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methidathion (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

nitrates (ISO)

nobiletin (ISO)

ozone (ISO)

paclitaxel (ISO)

paracetamol (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

thiram (ISO)

tolcapone (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrial large ribosomal subunit (IEA,ISO,ISS)

mitochondrial ribosome (IBA,IDA)

mitochondrion (IEA,ISO)

ribonucleoprotein complex (IEA)

ribosome (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Mammalian mitochondrial ribosomal proteins. N-terminal amino acid sequencing, characterization, and identification of corresponding gene sequences.	Goldschmidt-Reisin S, etal., J Biol Chem. 1998 Dec 25;273(52):34828-36.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:18614015	PMID:18775783	PMID:22681889	PMID:25278503	PMID:28892042

Genomics

Comparative Map Data

Mrpl40
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	95,637,751 - 95,643,587 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	95,637,712 - 95,643,586 (+)	Ensembl				GRCr8
mRatBN7.2	11	82,133,398 - 82,139,234 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	82,133,398 - 82,139,233 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	90,862,860 - 90,868,698 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	83,524,080 - 83,529,918 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	82,577,348 - 82,583,186 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	86,276,616 - 86,282,452 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	86,276,616 - 86,282,451 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	89,378,582 - 89,384,418 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	11	80,914,027 - 80,919,719 (+)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

MRPL40
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	19,432,545 - 19,436,075 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	19,432,467 - 19,436,077 (+)	Ensembl			hg38	GRCh38
GRCh37	22	19,420,068 - 19,423,598 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	17,800,036 - 17,803,598 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	22	17,794,589 - 17,798,148	NCBI
Celera	22	3,272,293 - 3,275,855 (+)	NCBI		Celera
Cytogenetic Map	22	q11.21	NCBI
HuRef	22	3,040,849 - 3,044,411 (+)	NCBI		HuRef
CHM1_1	22	19,419,610 - 19,423,172 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	19,809,376 - 19,812,906 (+)	NCBI		T2T-CHM13v2.0

Mrpl40
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	18,690,767 - 18,695,875 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	18,690,768 - 18,695,612 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	18,872,018 - 18,876,637 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	18,872,018 - 18,876,862 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	18,872,111 - 18,876,730 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	18,785,780 - 18,790,200 (-)	NCBI		MGSCv36	mm8
Celera	16	19,446,075 - 19,450,694 (-)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	11.69	NCBI

Mrpl40
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	18,577,952 - 18,580,517 (-)	Ensembl
ChiLan1.0	NW_004955442	18,578,107 - 18,580,517 (-)	NCBI	ChiLan1.0	ChiLan1.0

MRPL40
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	29,057,340 - 29,061,018 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	31,604,620 - 31,608,737 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	2,191,187 - 2,195,350 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	17,865,992 - 17,870,539 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	17,866,322 - 17,870,539 (+)	Ensembl			panPan2	panpan1.1

MRPL40
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	29,773,397 - 29,777,104 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	29,773,403 - 29,777,073 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	29,728,768 - 29,732,471 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	31,175,195 - 31,178,901 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	31,174,164 - 31,180,555 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	29,222,488 - 29,226,191 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	28,847,911 - 28,851,612 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	29,934,840 - 29,938,543 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mrpl40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	139,369,421 - 139,373,206 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	3,380,335 - 3,384,600 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936619	3,380,957 - 3,384,567 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPL40
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	51,102,613 - 51,105,767 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	51,102,900 - 51,105,769 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	54,669,933 - 54,672,802 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPL40
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	6,319,745 - 6,323,955 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	6,319,263 - 6,323,799 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666085	610,117 - 613,937 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrpl40
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	96,418 - 100,913 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	96,411 - 99,490 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mrpl40
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	4,117,405 - 4,123,366 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	649
Count of miRNA genes:	279
Interacting mature miRNAs:	345
Transcripts:	ENSRNOT00000071159
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70208	Niddm22	Non-insulin dependent diabetes mellitus QTL 22	3.61		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	73308487	96070872	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
1549848	Bvd6	Brain ventricular dilatation QTL 6	3.1	0.0001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	79618519	99753367	Rat
10450831	Scl80	Serum cholesterol level QTL 80	4.7	0.01	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	11	90461781	96556255	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	73850894	99753367	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	54415391	96071021	Rat
1354656	Bvd3	Brain ventricular dilatation QTL 3	3.64	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	82951028	96351019	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	57754837	96071021	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	73308315	99753367	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	68599321	96497754	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	69855943	99753367	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	51071021	96071021	Rat

Markers in Region

Mrpl40

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	48,249,761 - 48,250,175 (+)	MAPPER	mRatBN7.2
mRatBN7.2	2	59,471,127 - 59,471,615 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	54,961,080 - 54,961,493	NCBI	Rnor6.0
Rnor_6.0	2	60,471,065 - 60,471,552	NCBI	Rnor6.0
Rnor_5.0	15	58,683,336 - 58,683,749	UniSTS	Rnor5.0
RGSC_v3.4	2	59,847,412 - 59,847,899	UniSTS	RGSC3.4
RGSC_v3.4	15	53,706,993 - 53,707,406	UniSTS	RGSC3.4
Celera	15	47,899,572 - 47,899,985	UniSTS
Cytogenetic Map	2	q16	UniSTS
Cytogenetic Map	11	p12	UniSTS

RH128570

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	82,137,452 - 82,137,640 (+)	MAPPER	mRatBN7.2
mRatBN7.2	15	48,250,193 - 48,250,381 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	54,961,512 - 54,961,699	NCBI	Rnor6.0
Rnor_6.0	11	86,280,671 - 86,280,858	NCBI	Rnor6.0
Rnor_5.0	11	89,382,637 - 89,382,824	UniSTS	Rnor5.0
Rnor_5.0	15	58,683,768 - 58,683,955	UniSTS	Rnor5.0
RGSC_v3.4	15	53,707,425 - 53,707,612	UniSTS	RGSC3.4
Celera	15	47,900,004 - 47,900,191	UniSTS
Celera	11	80,918,082 - 80,918,269	UniSTS
Cytogenetic Map	11	p12	UniSTS

AI715998

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	82,139,031 - 82,139,163 (+)	MAPPER	mRatBN7.2
mRatBN7.2	15	48,251,770 - 48,251,889 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	54,963,089 - 54,963,207	NCBI	Rnor6.0
Rnor_6.0	11	86,282,250 - 86,282,381	NCBI	Rnor6.0
Rnor_5.0	15	58,685,345 - 58,685,463	UniSTS	Rnor5.0
Rnor_5.0	11	89,384,216 - 89,384,347	UniSTS	Rnor5.0
RGSC_v3.4	15	53,709,002 - 53,709,120	UniSTS	RGSC3.4
Celera	15	47,901,581 - 47,901,699	UniSTS
Celera	11	80,919,517 - 80,919,648	UniSTS
RH 3.4 Map	3	49.3	UniSTS
Cytogenetic Map	11	p12	UniSTS

Hira

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	82,132,470 - 82,132,627 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	86,275,689 - 86,275,845	NCBI	Rnor6.0
Rnor_5.0	11	89,377,655 - 89,377,811	UniSTS	Rnor5.0
Celera	11	80,913,100 - 80,913,256	UniSTS
Cytogenetic Map	11	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC097472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000071159 ⟹ ENSRNOP00000065376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	95,637,712 - 95,643,586 (+)	Ensembl
mRatBN7.2 Ensembl	11	82,133,398 - 82,139,233 (+)	Ensembl
Rnor_6.0 Ensembl	11	86,276,616 - 86,282,451 (+)	Ensembl

RefSeq Acc Id:

NM_001024865 ⟹ NP_001020036

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	95,637,751 - 95,643,587 (+)	NCBI
mRatBN7.2	11	82,133,398 - 82,139,234 (+)	NCBI
Rnor_6.0	11	86,276,616 - 86,282,452 (+)	NCBI
Rnor_5.0	11	89,378,582 - 89,384,418 (+)	NCBI
Celera	11	80,914,027 - 80,919,719 (+)	RGD

Sequence:

show sequence

GACAGACCTTACCCGGTACCTCAAGTCGGACCGCCCAAAGGAGCGCTCCCGGAAGCTGCCTGCC
TGCGGGTGGCGTAAAAAGCTATGGCTACCGCTGCGATGCTGTGTGCTGCGCGGGCTCTGCGACC
TCGGAGCTGGATCCCAGGAACCTGCCAGGCACAGGTCAGACACACCCACCAGAGAGCTTCCTTG
CTGTCCTTCTGGGAGCTCATCCCCATGAGAGCTGAACCTCTACGGAAGAAGAAGAAGGTAGACC
CTAGAAAGGATCAAGCAGCAAAGGATCGCTTGAAAAAGAGGATCCGAAAACTGGAAAGAGCCTC
CCAAGAACTGGTTCCTATTGAAGATTTTATTACCCCTGTGAGGTTCTTGGATAAATCAAGACAG
CGACCTCAGGAGGAGCATTCTTTTGAGGAGAGTGAGCGGAGAGCTCTTCTGCTGAAGAGGTGGG
CACTGTATAAGCAGCAGGAGCATGAGATGGAGAGGGACGCCATCAGAGCCATGCTGGAAGCCCA
GCAGGAAGCCCTGGAACAGCTGAAACTTGAGTCTACAGAGCTCTATGCCGAAGCCATAAAGCGG
GACACCAGCCTATTCCCCTTTGAGAAAGAAGGGCCACATTACACACCGCCTGTCCCTAACTACC
AGGCCCCTGAAGGCAGGTACAATGACATCACCAAGGTGTACACACAAGTAGAATTCAAAAGATA
GAACTGAAAACTGCTATCCTCAGAACATGCTGGCCCTAGGAGTCTGGACAAGCAATCTAAAGTC
TACTTTCCACAGATAAGTCATCCCAGGAACAAATAAAGGGTAATCAAAAGTATCTCTGTCATTT
ATTTTAATCAAAATGAATTTACCTAAGTTTGACTGCGGTTTTCGGATGCTGGTAGAACAGTGAC
AGAAAGACAAGAAGAGCCTTCCAGTAGGATGCGGCTGAAAACTAAAGATCTCAGTTGTATTCTG
AACTGTTTGCAGAAGGCACCTGATAACCCAAAGGTGAAAAGCATGCTGGGTAAGTGTGACAAAG
GAAGCTGGACCTTCGCTGGGGGCGGTCATCTGCAAAGTTTCCCCTTGGGTTGCCAAGGTGAAGG
GGGCCTTTCGAGAGTAGAACAAGTCAGAAACACAGTGAAAACTGCTCTGGCCTCCAGACGAGGA
TGAGACAGGCCCAAGACTCGCATTTGCTACAATTAATCAGAAACAATCCCAGTGCCTGGAAGAC
TGAAGCAGAAAGATTGCCAGGAGTTTAAGACTATCCCCCAAGGCACAGCTTGAGGCCCTGTCTC
TGAAACAAAACCAAAACTCTGAACTAGGGAATGTAGTGTATGTTCCAGCTGCCATAGTGCAGGC
ATCTTGCACAACAACAGGTTTTCCAGATCTCCCCAAGTTTAGTTCTTAGCACGCTTGATTTCTC
CCTTTGATTTGCAGGTCCAAAGAGATTGCTTCTCATCTTATGGCACATCCATGTTAGTGTCCAA
CAAACTTAATGGTCTCACTGTAGCCTAATTACATCCTTAAACACCCTGCTTCCACACTCTGGGA
TGCTGGAGGTTAGGACTTCAACATGTGATCTCAGTGAGGAGGGTTTGGTCCAATGGCAATATAC
TGCCATTTTTCCTAGTAACTTGAGGTGCAACTTCAGAAAGGCTTTAGCTTCTTAAGCTCTTCAG
TGCAGATAAGCCACTGTCTCACTATGAACGTGGATTATTGAAGGCTGGTGAAACAGTTTTGTGG
GAGACGGTCTAGCAGAGACAAGCCTCTGGCTTTGACTCCCAGCATCACATACCCCCCCCCCAAA
AAAAAAAATCTTTTGCTTATTGTGGCTAACGACAAATCTTACTCACTTGACCACTTCTAATTGA
GTAAGTGGTTTGTGTCTATAGTGTATAATATAACGAGAACGTATTTAGGACATCTTGCTACATC
TGTGTATCTCTAGGGCTTTCCCTTATGAAACAGAAAACTACCTATTAAAGAACGTCTGCCAACT
ATGGCATGTGACTAGTTCCAGCTATTTGGGAGACTGAGGGCTAACCTGGGCTATATCATGAAAC
ACTCATTTCCTCTATCCTCCCAGCAAAACCTCTGCCATTCCTTTCTGTCACATGAGTCTGATAT
GGGATCATTGATGATCTCTGCCTAGCCTAATTTCTCCAAGCATTCTGCCTCTATTTATATATTT
ATTTTTTTAGAGCACTGCTCCCAAAGTGGCTTCAACTGATCCTCCTGCCTCAGCCTCCCAAGTA
ATACCTACTGCTGTGTGCCACCATGAACACACCGCTAGATTTTCTCCCCTTCTCTGGGGTGGTT
GGGGGTCACACTTGTAACCCAGGCTGGCCTTGATCCCTCTCTTGTTTTGTCCTCTAGAATGAAT
TAGACATATGAATAAACCATATTTTGTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001020036	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97472	(Get FASTA)	NCBI Sequence Viewer
	EDL77962	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000065376
	ENSRNOP00000065376.1
GenBank Protein	P83565	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001020036 ⟸ NM_001024865
- Peptide Label:	precursor
- UniProtKB:	Q4V8A4 (UniProtKB/Swiss-Prot), P83565 (UniProtKB/Swiss-Prot), A6JSE5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATAAMLCAARALRPRSWIPGTCQAQVRHTHQRASLLSFWELIPMRAEPLRKKKKVDPRKDQAA KDRLKKRIRKLERASQELVPIEDFITPVRFLDKSRQRPQEEHSFEESERRALLLKRWALYKQQE HEMERDAIRAMLEAQQEALEQLKLESTELYAEAIKRDTSLFPFEKEGPHYTPPVPNYQAPEGRY NDITKVYTQVEFKR hide sequence

Ensembl Acc Id:

ENSRNOP00000065376 ⟸ ENSRNOT00000071159

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P83565-F1-model_v2	AlphaFold	P83565	1-206	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698293

Promoter ID:

EPDNEW_R8818

Type:

initiation region

Name:

Mrpl40_1

Description:

mitochondrial ribosomal protein L40

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	86,276,690 - 86,276,750	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565444	AgrOrtholog
BioCyc Gene	G2FUF-20675	BioCyc
Ensembl Genes	ENSRNOG00000049686	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000071159	ENTREZGENE
	ENSRNOT00000071159.2	UniProtKB/Swiss-Prot
Gene3D-CATH	6.10.250.3440	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7457772	IMAGE-MGC_LOAD
InterPro	MRPL40	UniProtKB/Swiss-Prot
	Ribosomal_L28_mit	UniProtKB/Swiss-Prot
KEGG Report	rno:287962	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114537	IMAGE-MGC_LOAD
NCBI Gene	287962	ENTREZGENE
PANTHER	39S RIBOSOMAL PROTEIN L40, MITOCHONDRIAL	UniProtKB/Swiss-Prot
	PTHR13359	UniProtKB/Swiss-Prot
Pfam	MRP-L28	UniProtKB/Swiss-Prot
PhenoGen	Mrpl40	PhenoGen
RatGTEx	ENSRNOG00000049686	RatGTEx
UniProt	A6JSE5	ENTREZGENE, UniProtKB/TrEMBL
	P83565	ENTREZGENE
	Q4V8A4	ENTREZGENE
	RM40_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q4V8A4	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Mrpl40	mitochondrial ribosomal protein L40			Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	Mrpl40	mitochondrial ribosomal protein L40			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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