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Gene: Zfp1 (zinc finger protein 1) Rattus norvegicus

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Symbol:

Zfp1

Name:

zinc finger protein 1

RGD ID:

1565049

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZFP1 (ZFP1 zinc finger protein); INTERACTS WITH acrylamide; bisphenol A; endosulfan.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC498952; RGD1565049; similar to Zfp1 protein; zinc finger protein 1 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZFP1 (ZFP1 zinc finger protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Zfp1 (zinc finger protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zfp1 (ZFP1 zinc finger protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZFP1 (ZFP1 zinc finger protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZFP1 (ZFP1 zinc finger protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zfp1 (ZFP1 zinc finger protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZFP1 (ZFP1 zinc finger protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZFP1 (ZFP1 zinc finger protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zfp1 (ZFP1 zinc finger protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Zfp1 (ZFP1 zinc finger protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZFP1 (ZFP1 zinc finger protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZFP1 (ZFP1 zinc finger protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp1 (zinc finger protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp1 (zinc finger protein 1)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-255f4.1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	ZAP1	Alliance	DIOPT (Hieranoid\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC100486793	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	LOC101732786	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	LOC101732786	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	56,508,828 - 56,542,109 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	56,509,280 - 56,542,773 (+)	Ensembl				GRCr8
mRatBN7.2	19	39,599,497 - 39,633,490 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	39,599,954 - 39,632,995 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	46,399,286 - 46,431,714 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	47,052,614 - 47,085,039 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	49,357,102 - 49,389,996 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	43,852,707 - 43,886,907 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	43,882,249 - 43,885,837 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	54,660,333 - 54,694,879 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	41,578,221 - 41,591,204 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	38,977,483 - 39,011,456 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-diaminodiphenylmethane (ISO)

acrolein (ISO)

acrylamide (EXP)

alpha-pinene (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

choline (ISO)

copper(II) sulfate (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

L-methionine (ISO)

methamphetamine (ISO)

methylmercury chloride (ISO)

ozone (ISO)

paracetamol (EXP)

phenylmercury acetate (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific double-stranded DNA binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zfp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	56,508,828 - 56,542,109 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	56,509,280 - 56,542,773 (+)	Ensembl				GRCr8
mRatBN7.2	19	39,599,497 - 39,633,490 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	39,599,954 - 39,632,995 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	46,399,286 - 46,431,714 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	47,052,614 - 47,085,039 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	49,357,102 - 49,389,996 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	43,852,707 - 43,886,907 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	43,882,249 - 43,885,837 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	54,660,333 - 54,694,879 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	41,578,221 - 41,591,204 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	38,977,483 - 39,011,456 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

ZFP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	75,119,002 - 75,172,234 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	75,148,494 - 75,172,236 (+)	Ensembl			hg38	GRCh38
GRCh37	16	75,182,422 - 75,206,132 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	73,739,922 - 73,763,633 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	73,739,925 - 73,763,486	NCBI
Celera	16	59,475,364 - 59,499,098 (+)	NCBI		Celera
Cytogenetic Map	16	q23.1	NCBI
HuRef	16	60,933,122 - 60,956,836 (+)	NCBI		HuRef
CHM1_1	16	76,594,604 - 76,618,256 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	81,165,700 - 81,218,965 (+)	NCBI		T2T-CHM13v2.0

Zfp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	112,366,606 - 112,397,740 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	112,370,033 - 112,397,643 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	111,643,443 - 111,671,108 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	111,643,401 - 111,671,011 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	114,167,343 - 114,194,911 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	114,530,116 - 114,557,684 (+)	NCBI		MGSCv36	mm8
Celera	8	115,871,013 - 115,898,936 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	57.98	NCBI

Zfp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	2,421,119 - 2,437,127 (-)	Ensembl
ChiLan1.0	NW_004955484	2,419,119 - 2,444,345 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZFP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	84,865,880 - 84,890,131 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	90,787,818 - 90,812,099 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	55,717,256 - 55,741,496 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	75,068,184 - 75,091,710 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	75,068,184 - 75,091,710 (+)	Ensembl			panPan2	panpan1.1

ZFP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	75,542,012 - 75,568,948 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	75,543,677 - 75,568,845 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	75,518,367 - 75,545,367 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	75,898,296 - 75,925,298 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	75,898,301 - 75,925,288 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	75,802,709 - 75,829,735 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	75,625,440 - 75,652,460 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	76,117,069 - 76,143,961 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zfp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	35,635,625 - 35,659,959 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	23,935,594 - 23,953,465 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	23,935,588 - 23,953,489 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZFP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	12,480,278 - 12,531,530 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	12,480,298 - 12,549,476 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	12,297,108 - 12,364,225 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZFP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	60,623,681 - 60,648,779 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666047	15,408,411 - 15,437,918 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zfp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624746	11,792,354 - 11,841,460 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zfp1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	31,327,228 - 31,358,736 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp1
11 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	27
Count of miRNA genes:	26
Interacting mature miRNAs:	27
Transcripts:	ENSRNOT00000025761
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

RH138153

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	39,610,159 - 39,610,349 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,863,521 - 43,863,710	NCBI	Rnor6.0
Rnor_6.0	19	43,736,762 - 43,736,951	NCBI	Rnor6.0
Rnor_5.0	19	54,671,002 - 54,671,191	UniSTS	Rnor5.0
Rnor_5.0	19	54,542,953 - 54,543,142	UniSTS	Rnor5.0
RGSC_v3.4	19	41,568,559 - 41,568,748	UniSTS	RGSC3.4
Celera	19	38,988,083 - 38,988,272	UniSTS
RH 3.4 Map	19	490.0	UniSTS
Cytogenetic Map	19	q12	UniSTS

AI011659

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	39,600,032 - 39,600,214 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,853,395 - 43,853,576	NCBI	Rnor6.0
Rnor_5.0	19	54,660,562 - 54,660,743	UniSTS	Rnor5.0
RGSC_v3.4	19	41,558,454 - 41,558,635	UniSTS	RGSC3.4
Celera	19	38,978,171 - 38,978,352	UniSTS
RH 3.4 Map	19	486.8	UniSTS
Cytogenetic Map	19	q12	UniSTS

BE107923

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	39,600,311 - 39,600,504 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,853,674 - 43,853,866	NCBI	Rnor6.0
Rnor_5.0	19	54,660,841 - 54,661,033	UniSTS	Rnor5.0
RGSC_v3.4	19	41,558,733 - 41,558,925	UniSTS	RGSC3.4
Celera	19	38,978,450 - 38,978,642	UniSTS
RH 3.4 Map	19	486.8	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001400992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001077676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_574241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025761 ⟹ ENSRNOP00000025761

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	56,509,330 - 56,542,773 (+)	Ensembl
mRatBN7.2 Ensembl	19	39,600,065 - 39,632,995 (+)	Ensembl
Rnor_6.0 Ensembl	19	43,882,249 - 43,885,837 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111457 ⟹ ENSRNOP00000081547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	56,509,280 - 56,542,750 (+)	Ensembl
mRatBN7.2 Ensembl	19	39,599,954 - 39,632,995 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000124269 ⟹ ENSRNOP00000108799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	56,526,338 - 56,542,750 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125010 ⟹ ENSRNOP00000112194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	56,526,421 - 56,542,750 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126946 ⟹ ENSRNOP00000100102

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	56,510,772 - 56,542,444 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158073 ⟹ ENSRNOP00000112057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	56,519,432 - 56,542,750 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159105 ⟹ ENSRNOP00000111865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	56,509,516 - 56,542,750 (+)	Ensembl

RefSeq Acc Id:

NM_001400992 ⟹ NP_001387921

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,509,330 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,600,032 - 39,632,820 (+)	NCBI

RefSeq Acc Id:

XM_006255656 ⟹ XP_006255718

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,526,577 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,617,284 - 39,633,490 (+)	NCBI
Rnor_6.0	19	43,872,075 - 43,886,907 (+)	NCBI
Rnor_5.0	19	54,660,333 - 54,694,879 (+)	NCBI

Sequence:

show sequence

GTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCCCTCTTAATTGCTTTAGTTGCTCATTGTTAC
TTAATTGCTGGGAGCTGTTTTAAGGATCCAGTCAAGGCCTCAAGCACACTAAGAATTCTTTGTT
CTGTTAGTGTTTTGTTACAGTGGCGAATGCCTGAGAGAAACAAGTCAAAAGAGGAGATTTATGG
TGGCCCCTGGTTTCAGTAAACGGCCCCTTGATCCCATCTTTTTAAATCTAAGGTGACATTGAAC
ATCTCCAGTGGGATGCGTGTTACAGTCTGCTTATCTCTTCTCACTTACTGGCAACCAGGAAGCA
GGAAGACAGGAAGGGGCTGGAGACAAGGTTTATCTCCTGGGGCGCGCCTTGGCAACCTGCTTCC
TCTTAAGTCCCACCCCCTATTTTTCACTAAGGCCACCAGGAAAGCCCACTGGGGATTAATCTGT
AGATGAAGGAGGGGCCCTCATGATTCACCCACTTGTCAGTGATTGGAAGGGGGAGGGGAGTGCG
TGGCGGGGGTGCGGCTGAGCCTTTGATTCAGGAGCTCACCTCTTCCCAGACCTTGACAGACAGC
CACAGGGCTATATGCCAAGCCGTTCGTGTTTTTCCTTTTTCCCTTGTAATTTCCATCTTTGCAG
AAGTTCCTTATTTCATCATTCATATTTGCCGTTTACATTAAAGCTAGTGTGGGAGTCATAGTTG
CTTTAAATTACTGACAGCCTCAGGAGTTGGGGGTTCTGGCTTCTGTTTTGTCTCTTGATGGTAG
GCTGTCTTCTTTATTCTTTTCTTTGAGACAGGATTTTTTTTGTGTAGACCAGGCTGGCCTTGAA
CTCATAAGAGAGCTGCCTGCTTCTGCCTCCTGAGCATGCAGCACCACCACCTGGCAGACGGGAT
TCCTGCCTTTCTGTATGTGCGTCTCTTCATGGTGCAAAGCAGTTGTGCCTTTGTGCTTCTGTGC
CTTTACCCCAACCCAGAAAATGATGGGGTCCCAGCTAATCACTTTAGAAGGAACTGTGTCATTT
CAGGGGTCCGTTTCATTCACTGATGTGACTGTGGACTTCTCCCAAGAGGAGTGGGAGCAGCTGG
ACCCCTCCCAGAGGATTCTCTACATGGATGTGATGTTGGAGAACTACAGCAACTTACTTTCAGT
GGAAGTGTGGAAGGCTGATGACCAGGTGGAAAAGGACCCCAGAGAACCGGATAAGCAGGCACCA
TCACTTACAACCCCCAAGAACCAACCACCAACTGAAGAAAGAGGCAGTCTCTTTGGAAAGAGAT
TGAATCTGAACACAGACTTGGTTTCGTTACGACAAGTTCCCTATAAGTACTATTTATATGGGAA
AACCTTGATGTACAATTCAGACCTGCTCAGCAGTAGGAGCTGTGTAGTAGAGAAAGGAGACGAG
TGTGGTGGACTTGGGGAACCACTTCTGTACCTGAAACAAGAGAAGCCCCATGCTGGGCTTCAGT
ACTCAGAATATAACGGAAATGGAAGGTCTCTCAGCCATACGGACGCCATCTTTAAACATCAGAA
AATTAAGAGCTTGGTTCAGCCTTTTGTCTGTAATTACTGTGACAAGGCCTTCTCCTTCAAGTCC
CTGCTTGTAAGTCACAAGAGGATCCACACGGGAGAAAAGCCCTACGAGTGCAATGTATGCCAAA
AAACCTTCTCCCATAAGGCAAACCTCATCAAGCACCAGAGGATTCACACTGGAGAGAAACCCTT
TGAGTGTCCCGAGTGCGGGAAAGCATTTACCCACCAGTCAAACCTCATCGTGCACCAGAGAGCA
CACATGGCGAAGAAGCCCTATGGATGCAATGAATGTGGAAAGACATTTGCTCAGAAGTTTGAGC
TCACCACACACCAGAGAATTCACACAGGAGAGCGGCCCTATGAGTGTAACGAATGCGCAAAAAC
CTTCTTTAAGAAATCAAACCTCATCATACATCAGAAAATTCACACAGGGGAGAAACGCTACGAG
TGCAGTGAGTGTGGGAAGTCGTTCATCCAGAACTCCCAGCTCATCATCCACAGGAGAACGCACA
CTGGGGAGAAGCCCTATGAGTGCACGGAGTGTGGCAAGACGTTCAGCCAGAGGTCAACGCTCAG
GCTACACCTGAGAATCCATACGGGAGAGAAACCCTACGAGTGTGCAGAGTGTGGGAAAGCCTTC
AGCAGGAAGTCTCGCCTCAGCGTCCACCAGAGGGTTCACATGGGATAGTCCTGAGGTCACAGGC
AAACTGCTGCAGAAAACCATCAAGCCAGAATTCTGGTGAGGGGGAAGCCCTCATGAAGATACTG
AAGGAACTTGGGAAATTCTATTTAGATGTAATCGAACTCAAAAACTGTAGAAAGGGTACCTAAG
AATATTATACTAAGGCCTGGAGAGATGGCTCAGTGGTTAAGAGCTCTGGCTGCTCTTCCAGAGG
CCCTGAGTTCAAATCCCAATAACCACATGGTGGCTCACAACGAACTGTAATGGGATCCGATGCC
TTCTTCTGGTGTGTCTGAAGAGAGAGACTCATATACATAAAATAAATAATTCTTTTTACAAAAT
ATATATTATACTGGAAGTTATAATATCCAGCTATAATATCCTGGAGTGCACATCCAGGGGTTGG
GGATTTAGCTCAGTGGTAGAGCGCTTACCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCT
CCAAAAAATAGAGAAGAAAAAAAAAAAAAAGAGTGTGTATTTCAGTACATACATATCCAGGTCC
AATTGTAAATAGATACACCCAGCTCCGTGTCCATGAGCTTTTGGCATTTTGTGCTTCTGAGGAT
CAAGTCTAGGGTCTTACTGTGCTAGGCAAGACTCTTTTTAAACCACTGATCTATATCTGCTATC
CACAGTGAACTTTTTAAAATCTTGAATGATGTGAATATTCTGAGAGGAAATGTAAACCATATAC
AGACAGTACCTCAGACATTTATATGTAAGGCTAGACCACAAAACACAAATGGTTTTAAATCTGC
TTATGTAAGCTCAGTAGCTACAGGAAATTTGAAATTCTCACCTTCGATAATTGCATCTCTCCAG
CCCCCTGGATTTTTACCTTTAAAGATAGTTGATTCTGACTTTTAAACTTAAGAAACAGGGGTTG
GGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGC
TCAGAAAAAAAGAACCAAAAAAAAAAAAAAACTTAAGAAACAGTACCTTTCCCATCTAGCATGC
ATCCAAAGGAAAAATGTGATGGATGTTAAA

hide sequence

RefSeq Acc Id:

XM_006255657 ⟹ XP_006255719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,508,843 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,599,513 - 39,633,490 (+)	NCBI
Rnor_6.0	19	43,852,709 - 43,886,907 (+)	NCBI
Rnor_5.0	19	54,660,333 - 54,694,879 (+)	NCBI

Sequence:

show sequence

CTACCCCATACAGAAATAAAGCTTTCATTTTTAAGCTTCTGTATCTGAAGTGAGTTTAGTTTAC
TTAGCTTCCTCCCCTCTCCCGACCCCAACACCGTAATCCCAGTAAGTAGGAAGTTGAAACAGGA
AGATTATTAGTTTGAAGCTAGCCTAGGCTTGGTGACAAGACCCTGTCTCAAATCAACAACATGG
AGTTATTGTGCCAGTGCTTCTAAAAATAACTGTAGTGCTGATAGAGCAAGGAAAACGGTGGTGG
CAGTGTGTGCCTGGGTGGGTGTAACACGGGGTCTCAGCCTTGGCTGGACTGAAACTCGGTATGT
CCTCCAACTCCCAAGGGATCTGCCTGCTTCTGCTTCCCGGCTAGCTTGGGTTAACGGCGTGCAC
TACCACTCCCAGAAAGGTGTGTGTTTCCTATAAGGATGAGATAAGGTTGATATCTGCTTTAACG
TACATATTTTGTTGAAAGTTTTAATCAATTACTCATGAAATTTCCAGGTCCAGGTTTTTAATAG
CATAGGAAGATGAAAGGAACTGTACTCACAACCATCTCTAAGACCACAACACAGTCCAGACTCA
GTTAACTTAGAAAAAAACGGTCCCTGCCCAACAAATAATGCGTAGTCTTCCCAGAGTTCCTAGA
GGCGCGGCTCAGAGGCATATGGGAATTGTAGTCCTAAAACTGGCGTCACTGCTACAAGGACTCT
GGGAACTGCCGCCCGCTCCACAATCTGCACGCTTGCGCAAAAGCCCTAGTGGTTGCCCTTCCCC
CACCTACAGTCGCGAGTGGGTGACAGAGCCCCCTTCTCCGCGAGCCTCGTGACCCGGAACCGCG
AGTGGAGGCTAAACCCCTCCAGTTGTGCCTTTGTGCTTCTGTGCCTTTACCCCAACCCAGAAAA
TGATGGGGTCCCAGCTAATCACTTTAGAAGGAACTGTGTCATTTCAGGGGTCCGTTTCATTCAC
TGATGTGACTGTGGACTTCTCCCAAGAGGAGTGGGAGCAGCTGGACCCCTCCCAGAGGATTCTC
TACATGGATGTGATGTTGGAGAACTACAGCAACTTACTTTCAGTGGAAGTGTGGAAGGCTGATG
ACCAGGTGGAAAAGGACCCCAGAGAACCGGATAAGCAGGCACCATCACTTACAACCCCCAAGAA
CCAACCACCAACTGAAGAAAGAGGCAGTCTCTTTGGAAAGAGATTGAATCTGAACACAGACTTG
GTTTCGTTACGACAAGTTCCCTATAAGTACTATTTATATGGGAAAACCTTGATGTACAATTCAG
ACCTGCTCAGCAGTAGGAGCTGTGTAGTAGAGAAAGGAGACGAGTGTGGTGGACTTGGGGAACC
ACTTCTGTACCTGAAACAAGAGAAGCCCCATGCTGGGCTTCAGTACTCAGAATATAACGGAAAT
GGAAGGTCTCTCAGCCATACGGACGCCATCTTTAAACATCAGAAAATTAAGAGCTTGGTTCAGC
CTTTTGTCTGTAATTACTGTGACAAGGCCTTCTCCTTCAAGTCCCTGCTTGTAAGTCACAAGAG
GATCCACACGGGAGAAAAGCCCTACGAGTGCAATGTATGCCAAAAAACCTTCTCCCATAAGGCA
AACCTCATCAAGCACCAGAGGATTCACACTGGAGAGAAACCCTTTGAGTGTCCCGAGTGCGGGA
AAGCATTTACCCACCAGTCAAACCTCATCGTGCACCAGAGAGCACACATGGCGAAGAAGCCCTA
TGGATGCAATGAATGTGGAAAGACATTTGCTCAGAAGTTTGAGCTCACCACACACCAGAGAATT
CACACAGGAGAGCGGCCCTATGAGTGTAACGAATGCGCAAAAACCTTCTTTAAGAAATCAAACC
TCATCATACATCAGAAAATTCACACAGGGGAGAAACGCTACGAGTGCAGTGAGTGTGGGAAGTC
GTTCATCCAGAACTCCCAGCTCATCATCCACAGGAGAACGCACACTGGGGAGAAGCCCTATGAG
TGCACGGAGTGTGGCAAGACGTTCAGCCAGAGGTCAACGCTCAGGCTACACCTGAGAATCCATA
CGGGAGAGAAACCCTACGAGTGTGCAGAGTGTGGGAAAGCCTTCAGCAGGAAGTCTCGCCTCAG
CGTCCACCAGAGGGTTCACATGGGATAGTCCTGAGGTCACAGGCAAACTGCTGCAGAAAACCAT
CAAGCCAGAATTCTGGTGAGGGGGAAGCCCTCATGAAGATACTGAAGGAACTTGGGAAATTCTA
TTTAGATGTAATCGAACTCAAAAACTGTAGAAAGGGTACCTAAGAATATTATACTAAGGCCTGG
AGAGATGGCTCAGTGGTTAAGAGCTCTGGCTGCTCTTCCAGAGGCCCTGAGTTCAAATCCCAAT
AACCACATGGTGGCTCACAACGAACTGTAATGGGATCCGATGCCTTCTTCTGGTGTGTCTGAAG
AGAGAGACTCATATACATAAAATAAATAATTCTTTTTACAAAATATATATTATACTGGAAGTTA
TAATATCCAGCTATAATATCCTGGAGTGCACATCCAGGGGTTGGGGATTTAGCTCAGTGGTAGA
GCGCTTACCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAATAGAGAAGAAAA
AAAAAAAAAAGAGTGTGTATTTCAGTACATACATATCCAGGTCCAATTGTAAATAGATACACCC
AGCTCCGTGTCCATGAGCTTTTGGCATTTTGTGCTTCTGAGGATCAAGTCTAGGGTCTTACTGT
GCTAGGCAAGACTCTTTTTAAACCACTGATCTATATCTGCTATCCACAGTGAACTTTTTAAAAT
CTTGAATGATGTGAATATTCTGAGAGGAAATGTAAACCATATACAGACAGTACCTCAGACATTT
ATATGTAAGGCTAGACCACAAAACACAAATGGTTTTAAATCTGCTTATGTAAGCTCAGTAGCTA
CAGGAAATTTGAAATTCTCACCTTCGATAATTGCATCTCTCCAGCCCCCTGGATTTTTACCTTT
AAAGATAGTTGATTCTGACTTTTAAACTTAAGAAACAGGGGTTGGGGATTTAGCTCAGTGGTAG
AGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCAGAAAAAAAGAACCAAAA
AAAAAAAAAAACTTAAGAAACAGTACCTTTCCCATCTAGCATGCATCCAAAGGAAAAATGTGAT
GGATGTTAAA

hide sequence

RefSeq Acc Id:

XM_006255663 ⟹ XP_006255725

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,526,575 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,617,283 - 39,633,490 (+)	NCBI
Rnor_6.0	19	43,872,074 - 43,886,907 (+)	NCBI
Rnor_5.0	19	54,660,333 - 54,694,879 (+)	NCBI

Sequence:

show sequence

AGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCCCTCTTAATTGCTTTAGTTGCTCATTGTTA
CTTAATTGCTGGGAGCTGTTTTAAGGATCCAGTCAAGGCCTCAAGCACACTAAGAATTCTTTGT
TCTGTTAGTGTTTTGTTACAGTGGCGAATGCCTGAGAGAAACAAGTCAAAAGAGGAGATTTATG
GTGGCCCCTGGTTTCAGTAAACGGCCCCTTGATCCCATCTTTTTAAATCTAAGGTGACATTGAA
CATCTCCAGTGGGATGCGTGTTACAGTCTGCTTATCTCTTCTCACTTACTGGCAACCAGGAAGC
AGGAAGACAGGAAGGGGCTGGAGACAAGGTTTATCTCCTGGGGCGCGCCTTGGCAACCTGCTTC
CTCTTAAGTCCCACCCCCTATTTTTCACTAAGGCCACCAGGAAAGCCCACTGGGGATTAATCTG
TAGATGAAGGAGGGGCCCTCATGATTCACCCACTTGTCAGTGATTGGAAGGGGGAGGGGAGTGC
GTGGCGGGGGTGCGGCTGAGCCTTTGATTCAGGAGCTCACCTCTTCCCAGACCTTGACAGACAG
CCACAGGGCTATATGCCAAGCCGTTCGTGTTTTTCCTTTTTCCCTTGTAATTTCCATCTTTGCA
GAAGTTCCTTATTTCATCATTCATATTTGCCGTTTACATTAAAGCTAGTGTGGGAGTCATAGTT
GCTTTAAATTACTGACAGCCTCAGGAGTTGGGGGTTCTGGCTTCTGTTTTGTCTCTTGATGGTA
GGCTGTCTTCTTTATTCTTTTCTTTGAGACAGGATTTTTTTTGTGTAGACCAGGCTGGCCTTGA
ACTCATAAGAGAGCTGCCTGCTTCTGCCTCCTGAGCATGCAGCACCACCACCTGGCAGACGGGA
TTCCTGCCTTTCTGTATGTGCGTCTCTTCATGGTGCAAAGCAGTTGTGCCTTTGTGCTTCTGTG
CCTTTACCCCAACCCAGAAAATGATGGGGTCCCAGAAGTGTGGAAGGCTGATGACCAGGTGGAA
AAGGACCCCAGAGAACCGGATAAGCAGGCACCATCACTTACAACCCCCAAGAACCAACCACCAA
CTGAAGAAAGAGGCAGTCTCTTTGGAAAGAGATTGAATCTGAACACAGACTTGGTTTCGTTACG
ACAAGTTCCCTATAAGTACTATTTATATGGGAAAACCTTGATGTACAATTCAGACCTGCTCAGC
AGTAGGAGCTGTGTAGTAGAGAAAGGAGACGAGTGTGGTGGACTTGGGGAACCACTTCTGTACC
TGAAACAAGAGAAGCCCCATGCTGGGCTTCAGTACTCAGAATATAACGGAAATGGAAGGTCTCT
CAGCCATACGGACGCCATCTTTAAACATCAGAAAATTAAGAGCTTGGTTCAGCCTTTTGTCTGT
AATTACTGTGACAAGGCCTTCTCCTTCAAGTCCCTGCTTGTAAGTCACAAGAGGATCCACACGG
GAGAAAAGCCCTACGAGTGCAATGTATGCCAAAAAACCTTCTCCCATAAGGCAAACCTCATCAA
GCACCAGAGGATTCACACTGGAGAGAAACCCTTTGAGTGTCCCGAGTGCGGGAAAGCATTTACC
CACCAGTCAAACCTCATCGTGCACCAGAGAGCACACATGGCGAAGAAGCCCTATGGATGCAATG
AATGTGGAAAGACATTTGCTCAGAAGTTTGAGCTCACCACACACCAGAGAATTCACACAGGAGA
GCGGCCCTATGAGTGTAACGAATGCGCAAAAACCTTCTTTAAGAAATCAAACCTCATCATACAT
CAGAAAATTCACACAGGGGAGAAACGCTACGAGTGCAGTGAGTGTGGGAAGTCGTTCATCCAGA
ACTCCCAGCTCATCATCCACAGGAGAACGCACACTGGGGAGAAGCCCTATGAGTGCACGGAGTG
TGGCAAGACGTTCAGCCAGAGGTCAACGCTCAGGCTACACCTGAGAATCCATACGGGAGAGAAA
CCCTACGAGTGTGCAGAGTGTGGGAAAGCCTTCAGCAGGAAGTCTCGCCTCAGCGTCCACCAGA
GGGTTCACATGGGATAGTCCTGAGGTCACAGGCAAACTGCTGCAGAAAACCATCAAGCCAGAAT
TCTGGTGAGGGGGAAGCCCTCATGAAGATACTGAAGGAACTTGGGAAATTCTATTTAGATGTAA
TCGAACTCAAAAACTGTAGAAAGGGTACCTAAGAATATTATACTAAGGCCTGGAGAGATGGCTC
AGTGGTTAAGAGCTCTGGCTGCTCTTCCAGAGGCCCTGAGTTCAAATCCCAATAACCACATGGT
GGCTCACAACGAACTGTAATGGGATCCGATGCCTTCTTCTGGTGTGTCTGAAGAGAGAGACTCA
TATACATAAAATAAATAATTCTTTTTACAAAATATATATTATACTGGAAGTTATAATATCCAGC
TATAATATCCTGGAGTGCACATCCAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTA
GCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAATAGAGAAGAAAAAAAAAAAAAAG
AGTGTGTATTTCAGTACATACATATCCAGGTCCAATTGTAAATAGATACACCCAGCTCCGTGTC
CATGAGCTTTTGGCATTTTGTGCTTCTGAGGATCAAGTCTAGGGTCTTACTGTGCTAGGCAAGA
CTCTTTTTAAACCACTGATCTATATCTGCTATCCACAGTGAACTTTTTAAAATCTTGAATGATG
TGAATATTCTGAGAGGAAATGTAAACCATATACAGACAGTACCTCAGACATTTATATGTAAGGC
TAGACCACAAAACACAAATGGTTTTAAATCTGCTTATGTAAGCTCAGTAGCTACAGGAAATTTG
AAATTCTCACCTTCGATAATTGCATCTCTCCAGCCCCCTGGATTTTTACCTTTAAAGATAGTTG
ATTCTGACTTTTAAACTTAAGAAACAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCT
AGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCAGAAAAAAAGAACCAAAAAAAAAAAAAAA
CTTAAGAAACAGTACCTTTCCCATCTAGCATGCATCCAAAGGAAAAATGTGATGGATGTTAAA

hide sequence

RefSeq Acc Id:

XM_017601443 ⟹ XP_017456932

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,526,574 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,617,282 - 39,633,490 (+)	NCBI
Rnor_6.0	19	43,872,076 - 43,886,907 (+)	NCBI

Sequence:

show sequence

TGCTCTTAACCTCTGAGCCATCTCTCCAGCCCCCTCTTAATTGCTTTAGTTGCTCATTGTTACT
TAATTGCTGGGAGCTGTTTTAAGGATCCAGTCAAGGCCTCAAGCACACTAAGAATTCTTTGTTC
TGTTAGTGTTTTGTTACAGTGGCGAATGCCTGAGAGAAACAAGTCAAAAGAGGAGATTTATGGT
GGCCCCTGGTTTCAGTAAACGGCCCCTTGATCCCATCTTTTTAAATCTAAGGTGACATTGAACA
TCTCCAGTGGGATGCGTGTTACAGTCTGCTTATCTCTTCTCACTTACTGGCAACCAGGAAGCAG
GAAGACAGGAAGGGGCTGGAGACAAGGTTTATCTCCTGGGGCGCGCCTTGGCAACCTGCTTCCT
CTTAAGTCCCACCCCCTATTTTTCACTAAGGCCACCAGGAAAGCCCACTGGGGATTAATCTGTA
GATGAAGGAGGGGCCCTCATGATTCACCCACTTGTCAGTGATTGGAAGGGGGAGGGGAGTGCGT
GGCGGGGGTGCGGCTGAGCCTTTGATTCAGGAGCTCACCTCTTCCCAGACCTTGACAGACAGCC
ACAGGGCTATATGCCAAGCCGTTCGTGTTTTTCCTTTTTCCCTTGTAATTTCCATCTTTGCAGA
AGTTCCTTATTTCATCATTCATATTTGCCGTTTACATTAAAGCTAGTGTGGGAGTCATAGTTGC
TTTAAATTACTGACAGCCTCAGGAGTTGGGGGTTCTGGCTTCTGTTTTGTCTCTTGATGGTAGG
CTGTCTTCTTTATTCTTTTCTTTGAGACAGGATTTTTTTTGTGTAGACCAGGCTGGCCTTGAAC
TCATAAGAGAGCTGCCTGCTTCTGCCTCCTGAGCATGCAGCACCACCACCTGGCAGACGGGATT
CCTGCCTTTCTGTATGTGCGTCTCTTCATGGTGCAAAGCAGTTGTGCCTTTGTGCTTCTGTGCC
TTTACCCCAACCCAGAAAATGATGGGGTCCCAGGTCAGGGAACCAGTGTGAGAATTCTGCCAAC
TTCTAAGTACATGCATCCCGATTACACATTCTGGAACTGGAGAGACCAGAGGATGAGTGTGGGG
ACCCAGTCGGACTTCAACCAAGCCGCCATGAGTCATCTGGCCTCTGGGTCCGTTTCATTCACTG
ATGTGACTGTGGACTTCTCCCAAGAGGAGTGGGAGCAGCTGGACCCCTCCCAGAGGATTCTCTA
CATGGATGTGATGTTGGAGAACTACAGCAACTTACTTTCAGTGGAAGTGTGGAAGGCTGATGAC
CAGGTGGAAAAGGACCCCAGAGAACCGGATAAGCAGGCACCATCACTTACAACCCCCAAGAACC
AACCACCAACTGAAGAAAGAGGCAGTCTCTTTGGAAAGAGATTGAATCTGAACACAGACTTGGT
TTCGTTACGACAAGTTCCCTATAAGTACTATTTATATGGGAAAACCTTGATGTACAATTCAGAC
CTGCTCAGCAGTAGGAGCTGTGTAGTAGAGAAAGGAGACGAGTGTGGTGGACTTGGGGAACCAC
TTCTGTACCTGAAACAAGAGAAGCCCCATGCTGGGCTTCAGTACTCAGAATATAACGGAAATGG
AAGGTCTCTCAGCCATACGGACGCCATCTTTAAACATCAGAAAATTAAGAGCTTGGTTCAGCCT
TTTGTCTGTAATTACTGTGACAAGGCCTTCTCCTTCAAGTCCCTGCTTGTAAGTCACAAGAGGA
TCCACACGGGAGAAAAGCCCTACGAGTGCAATGTATGCCAAAAAACCTTCTCCCATAAGGCAAA
CCTCATCAAGCACCAGAGGATTCACACTGGAGAGAAACCCTTTGAGTGTCCCGAGTGCGGGAAA
GCATTTACCCACCAGTCAAACCTCATCGTGCACCAGAGAGCACACATGGCGAAGAAGCCCTATG
GATGCAATGAATGTGGAAAGACATTTGCTCAGAAGTTTGAGCTCACCACACACCAGAGAATTCA
CACAGGAGAGCGGCCCTATGAGTGTAACGAATGCGCAAAAACCTTCTTTAAGAAATCAAACCTC
ATCATACATCAGAAAATTCACACAGGGGAGAAACGCTACGAGTGCAGTGAGTGTGGGAAGTCGT
TCATCCAGAACTCCCAGCTCATCATCCACAGGAGAACGCACACTGGGGAGAAGCCCTATGAGTG
CACGGAGTGTGGCAAGACGTTCAGCCAGAGGTCAACGCTCAGGCTACACCTGAGAATCCATACG
GGAGAGAAACCCTACGAGTGTGCAGAGTGTGGGAAAGCCTTCAGCAGGAAGTCTCGCCTCAGCG
TCCACCAGAGGGTTCACATGGGATAGTCCTGAGGTCACAGGCAAACTGCTGCAGAAAACCATCA
AGCCAGAATTCTGGTGAGGGGGAAGCCCTCATGAAGATACTGAAGGAACTTGGGAAATTCTATT
TAGATGTAATCGAACTCAAAAACTGTAGAAAGGGTACCTAAGAATATTATACTAAGGCCTGGAG
AGATGGCTCAGTGGTTAAGAGCTCTGGCTGCTCTTCCAGAGGCCCTGAGTTCAAATCCCAATAA
CCACATGGTGGCTCACAACGAACTGTAATGGGATCCGATGCCTTCTTCTGGTGTGTCTGAAGAG
AGAGACTCATATACATAAAATAAATAATTCTTTTTACAAAATATATATTATACTGGAAGTTATA
ATATCCAGCTATAATATCCTGGAGTGCACATCCAGGGGTTGGGGATTTAGCTCAGTGGTAGAGC
GCTTACCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAATAGAGAAGAAAAAA
AAAAAAAAGAGTGTGTATTTCAGTACATACATATCCAGGTCCAATTGTAAATAGATACACCCAG
CTCCGTGTCCATGAGCTTTTGGCATTTTGTGCTTCTGAGGATCAAGTCTAGGGTCTTACTGTGC
TAGGCAAGACTCTTTTTAAACCACTGATCTATATCTGCTATCCACAGTGAACTTTTTAAAATCT
TGAATGATGTGAATATTCTGAGAGGAAATGTAAACCATATACAGACAGTACCTCAGACATTTAT
ATGTAAGGCTAGACCACAAAACACAAATGGTTTTAAATCTGCTTATGTAAGCTCAGTAGCTACA
GGAAATTTGAAATTCTCACCTTCGATAATTGCATCTCTCCAGCCCCCTGGATTTTTACCTTTAA
AGATAGTTGATTCTGACTTTTAAACTTAAGAAACAGGGGTTGGGGATTTAGCTCAGTGGTAGAG
CGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCAGAAAAAAAGAACCAAAAAA
AAAAAAAAACTTAAGAAACAGTACCTTTCCCATCTAGCATGCATCCAAAGGAAAAATGTGATGG
ATGTTAAA

hide sequence

RefSeq Acc Id:

XM_039098271 ⟹ XP_038954199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,526,571 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,617,279 - 39,633,490 (+)	NCBI

RefSeq Acc Id:

XM_039098273 ⟹ XP_038954201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,508,842 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,599,512 - 39,633,490 (+)	NCBI

RefSeq Acc Id:

XM_039098276 ⟹ XP_038954204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,508,843 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,599,513 - 39,633,490 (+)	NCBI

RefSeq Acc Id:

XM_039098277 ⟹ XP_038954205

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,508,847 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,599,515 - 39,633,490 (+)	NCBI

RefSeq Acc Id:

XM_039098278 ⟹ XP_038954206

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,508,847 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,599,515 - 39,633,490 (+)	NCBI

RefSeq Acc Id:

XM_039098279 ⟹ XP_038954207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,522,105 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,612,813 - 39,633,490 (+)	NCBI

RefSeq Acc Id:

XM_063278200 ⟹ XP_063134270

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,508,828 - 56,542,109 (+)	NCBI

RefSeq Acc Id:

XM_063278202 ⟹ XP_063134272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,526,575 - 56,542,109 (+)	NCBI

RefSeq Acc Id:

XM_063278203 ⟹ XP_063134273

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,508,832 - 56,542,109 (+)	NCBI

RefSeq Acc Id:

XM_063278205 ⟹ XP_063134275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,508,851 - 56,542,109 (+)	NCBI

RefSeq Acc Id:

XM_063278206 ⟹ XP_063134276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,538,185 - 56,542,109 (+)	NCBI

RefSeq Acc Id:

XM_063278207 ⟹ XP_063134277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,538,185 - 56,542,109 (+)	NCBI

RefSeq Acc Id:

XM_574241 ⟹ XP_574241

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,526,578 - 56,542,109 (+)	NCBI
mRatBN7.2	19	39,617,285 - 39,633,490 (+)	NCBI
Rnor_6.0	19	43,872,076 - 43,886,907 (+)	NCBI
Rnor_5.0	19	54,660,333 - 54,694,879 (+)	NCBI
RGSC_v3.4	19	41,578,221 - 41,591,204 (+)	RGD

Sequence:

show sequence

TGCTCTTAACCTCTGAGCCATCTCTCCAGCCCCCTCTTAATTGCTTTAGTTGCTCATTGTTACT
TAATTGCTGGGAGCTGTTTTAAGGATCCAGTCAAGGCCTCAAGCACACTAAGAATTCTTTGTTC
TGTTAGTGTTTTGTTACAGTGGCGAATGCCTGAGAGAAACAAGTCAAAAGAGGAGATTTATGGT
GGCCCCTGGTTTCAGTAAACGGCCCCTTGATCCCATCTTTTTAAATCTAAGGTGACATTGAACA
TCTCCAGTGGGATGCGTGTTACAGTCTGCTTATCTCTTCTCACTTACTGGCAACCAGGAAGCAG
GAAGACAGGAAGGGGCTGGAGACAAGGTTTATCTCCTGGGGCGCGCCTTGGCAACCTGCTTCCT
CTTAAGTCCCACCCCCTATTTTTCACTAAGGCCACCAGGAAAGCCCACTGGGGATTAATCTGTA
GATGAAGGAGGGGCCCTCATGATTCACCCACTTGTCAGTGATTGGAAGGGGGAGGGGAGTGCGT
GGCGGGGGTGCGGCTGAGCCTTTGATTCAGGAGCTCACCTCTTCCCAGACCTTGACAGACAGCC
ACAGGGCTATATGCCAAGCCGTTCGTGTTTTTCCTTTTTCCCTTGTAATTTCCATCTTTGCAGA
AGTTCCTTATTTCATCATTCATATTTGCCGTTTACATTAAAGCTAGTGTGGGAGTCATAGTTGC
TTTAAATTACTGACAGCCTCAGGAGTTGGGGGTTCTGGCTTCTGTTTTGTCTCTTGATGGTAGG
CTGTCTTCTTTATTCTTTTCTTTGAGACAGGATTTTTTTTGTGTAGACCAGGCTGGCCTTGAAC
TCATAAGAGAGCTGCCTGCTTCTGCCTCCTGAGCATGCAGCACCACCACCTGGCAGACGGGATT
CCTGCCTTTCTGTATGTGCGTCTCTTCATGGTGCAAAGCAGTTGTGCCTTTGTGCTTCTGTGCC
TTTACCCCAACCCAGAAAATGATGGGGTCCCAGGGGTCCGTTTCATTCACTGATGTGACTGTGG
ACTTCTCCCAAGAGGAGTGGGAGCAGCTGGACCCCTCCCAGAGGATTCTCTACATGGATGTGAT
GTTGGAGAACTACAGCAACTTACTTTCAGTGGAAGTGTGGAAGGCTGATGACCAGGTGGAAAAG
GACCCCAGAGAACCGGATAAGCAGGCACCATCACTTACAACCCCCAAGAACCAACCACCAACTG
AAGAAAGAGGCAGTCTCTTTGGAAAGAGATTGAATCTGAACACAGACTTGGTTTCGTTACGACA
AGTTCCCTATAAGTACTATTTATATGGGAAAACCTTGATGTACAATTCAGACCTGCTCAGCAGT
AGGAGCTGTGTAGTAGAGAAAGGAGACGAGTGTGGTGGACTTGGGGAACCACTTCTGTACCTGA
AACAAGAGAAGCCCCATGCTGGGCTTCAGTACTCAGAATATAACGGAAATGGAAGGTCTCTCAG
CCATACGGACGCCATCTTTAAACATCAGAAAATTAAGAGCTTGGTTCAGCCTTTTGTCTGTAAT
TACTGTGACAAGGCCTTCTCCTTCAAGTCCCTGCTTGTAAGTCACAAGAGGATCCACACGGGAG
AAAAGCCCTACGAGTGCAATGTATGCCAAAAAACCTTCTCCCATAAGGCAAACCTCATCAAGCA
CCAGAGGATTCACACTGGAGAGAAACCCTTTGAGTGTCCCGAGTGCGGGAAAGCATTTACCCAC
CAGTCAAACCTCATCGTGCACCAGAGAGCACACATGGCGAAGAAGCCCTATGGATGCAATGAAT
GTGGAAAGACATTTGCTCAGAAGTTTGAGCTCACCACACACCAGAGAATTCACACAGGAGAGCG
GCCCTATGAGTGTAACGAATGCGCAAAAACCTTCTTTAAGAAATCAAACCTCATCATACATCAG
AAAATTCACACAGGGGAGAAACGCTACGAGTGCAGTGAGTGTGGGAAGTCGTTCATCCAGAACT
CCCAGCTCATCATCCACAGGAGAACGCACACTGGGGAGAAGCCCTATGAGTGCACGGAGTGTGG
CAAGACGTTCAGCCAGAGGTCAACGCTCAGGCTACACCTGAGAATCCATACGGGAGAGAAACCC
TACGAGTGTGCAGAGTGTGGGAAAGCCTTCAGCAGGAAGTCTCGCCTCAGCGTCCACCAGAGGG
TTCACATGGGATAGTCCTGAGGTCACAGGCAAACTGCTGCAGAAAACCATCAAGCCAGAATTCT
GGTGAGGGGGAAGCCCTCATGAAGATACTGAAGGAACTTGGGAAATTCTATTTAGATGTAATCG
AACTCAAAAACTGTAGAAAGGGTACCTAAGAATATTATACTAAGGCCTGGAGAGATGGCTCAGT
GGTTAAGAGCTCTGGCTGCTCTTCCAGAGGCCCTGAGTTCAAATCCCAATAACCACATGGTGGC
TCACAACGAACTGTAATGGGATCCGATGCCTTCTTCTGGTGTGTCTGAAGAGAGAGACTCATAT
ACATAAAATAAATAATTCTTTTTACAAAATATATATTATACTGGAAGTTATAATATCCAGCTAT
AATATCCTGGAGTGCACATCCAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGCA
AGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAATAGAGAAGAAAAAAAAAAAAAAGAGT
GTGTATTTCAGTACATACATATCCAGGTCCAATTGTAAATAGATACACCCAGCTCCGTGTCCAT
GAGCTTTTGGCATTTTGTGCTTCTGAGGATCAAGTCTAGGGTCTTACTGTGCTAGGCAAGACTC
TTTTTAAACCACTGATCTATATCTGCTATCCACAGTGAACTTTTTAAAATCTTGAATGATGTGA
ATATTCTGAGAGGAAATGTAAACCATATACAGACAGTACCTCAGACATTTATATGTAAGGCTAG
ACCACAAAACACAAATGGTTTTAAATCTGCTTATGTAAGCTCAGTAGCTACAGGAAATTTGAAA
TTCTCACCTTCGATAATTGCATCTCTCCAGCCCCCTGGATTTTTACCTTTAAAGATAGTTGATT
CTGACTTTTAAACTTAAGAAACAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGG
AAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCAGAAAAAAAGAACCAAAAAAAAAAAAAAACTT
AAGAAACAGTACCTTTCCCATCTAGCATGCATCCAAAGGAAAAATGTGATGGATGTTAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001387921	(Get FASTA)	NCBI Sequence Viewer
	XP_006255718	(Get FASTA)	NCBI Sequence Viewer
	XP_006255719	(Get FASTA)	NCBI Sequence Viewer
	XP_006255725	(Get FASTA)	NCBI Sequence Viewer
	XP_017456932	(Get FASTA)	NCBI Sequence Viewer
	XP_038954199	(Get FASTA)	NCBI Sequence Viewer
	XP_038954201	(Get FASTA)	NCBI Sequence Viewer
	XP_038954204	(Get FASTA)	NCBI Sequence Viewer
	XP_038954205	(Get FASTA)	NCBI Sequence Viewer
	XP_038954206	(Get FASTA)	NCBI Sequence Viewer
	XP_038954207	(Get FASTA)	NCBI Sequence Viewer
	XP_063134270	(Get FASTA)	NCBI Sequence Viewer
	XP_063134272	(Get FASTA)	NCBI Sequence Viewer
	XP_063134273	(Get FASTA)	NCBI Sequence Viewer
	XP_063134275	(Get FASTA)	NCBI Sequence Viewer
	XP_063134276	(Get FASTA)	NCBI Sequence Viewer
	XP_063134277	(Get FASTA)	NCBI Sequence Viewer
	XP_574241	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92578	(Get FASTA)	NCBI Sequence Viewer
	EDL92579	(Get FASTA)	NCBI Sequence Viewer
	EDL92580	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025761
	ENSRNOP00000025761.6
	ENSRNOP00000081547
	ENSRNOP00000081547.2
	ENSRNOP00000100102.1
	ENSRNOP00000108799
	ENSRNOP00000108799.1
	ENSRNOP00000111865
	ENSRNOP00000111865.1
	ENSRNOP00000112057
	ENSRNOP00000112057.1
	ENSRNOP00000112194
	ENSRNOP00000112194.1

RefSeq Acc Id:

XP_574241 ⟸ XM_574241

- Peptide Label:

isoform X6

- Sequence:

show sequence

MCVSSWCKAVVPLCFCAFTPTQKMMGSQGSVSFTDVTVDFSQEEWEQLDPSQRILYMDVMLENY
SNLLSVEVWKADDQVEKDPREPDKQAPSLTTPKNQPPTEERGSLFGKRLNLNTDLVSLRQVPYK
YYLYGKTLMYNSDLLSSRSCVVEKGDECGGLGEPLLYLKQEKPHAGLQYSEYNGNGRSLSHTDA
IFKHQKIKSLVQPFVCNYCDKAFSFKSLLVSHKRIHTGEKPYECNVCQKTFSHKANLIKHQRIH
TGEKPFECPECGKAFTHQSNLIVHQRAHMAKKPYGCNECGKTFAQKFELTTHQRIHTGERPYEC
NECAKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHRRTHTGEKPYECTECGKTFS
QRSTLRLHLRIHTGEKPYECAECGKAFSRKSRLSVHQRVHMG

hide sequence

RefSeq Acc Id:	XP_006255719 ⟸ XM_006255657
- Peptide Label:	isoform X8
- UniProtKB:	F1LXE4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMGSQLITLEGTVSFQGSVSFTDVTVDFSQEEWEQLDPSQRILYMDVMLENYSNLLSVEVWKAD DQVEKDPREPDKQAPSLTTPKNQPPTEERGSLFGKRLNLNTDLVSLRQVPYKYYLYGKTLMYNS DLLSSRSCVVEKGDECGGLGEPLLYLKQEKPHAGLQYSEYNGNGRSLSHTDAIFKHQKIKSLVQ PFVCNYCDKAFSFKSLLVSHKRIHTGEKPYECNVCQKTFSHKANLIKHQRIHTGEKPFECPECG KAFTHQSNLIVHQRAHMAKKPYGCNECGKTFAQKFELTTHQRIHTGERPYECNECAKTFFKKSN LIIHQKIHTGEKRYECSECGKSFIQNSQLIIHRRTHTGEKPYECTECGKTFSQRSTLRLHLRIH TGEKPYECAECGKAFSRKSRLSVHQRVHMG hide sequence

RefSeq Acc Id:

XP_006255725 ⟸ XM_006255663

- Peptide Label:

isoform X10

- Sequence:

show sequence

MQHHHLADGIPAFLYVRLFMVQSSCAFVLLCLYPNPENDGVPEVWKADDQVEKDPREPDKQAPS
LTTPKNQPPTEERGSLFGKRLNLNTDLVSLRQVPYKYYLYGKTLMYNSDLLSSRSCVVEKGDEC
GGLGEPLLYLKQEKPHAGLQYSEYNGNGRSLSHTDAIFKHQKIKSLVQPFVCNYCDKAFSFKSL
LVSHKRIHTGEKPYECNVCQKTFSHKANLIKHQRIHTGEKPFECPECGKAFTHQSNLIVHQRAH
MAKKPYGCNECGKTFAQKFELTTHQRIHTGERPYECNECAKTFFKKSNLIIHQKIHTGEKRYEC
SECGKSFIQNSQLIIHRRTHTGEKPYECTECGKTFSQRSTLRLHLRIHTGEKPYECAECGKAFS
RKSRLSVHQRVHMG

hide sequence

RefSeq Acc Id:

XP_006255718 ⟸ XM_006255656

- Peptide Label:

isoform X4

- Sequence:

show sequence

MCVSSWCKAVVPLCFCAFTPTQKMMGSQLITLEGTVSFQGSVSFTDVTVDFSQEEWEQLDPSQR
ILYMDVMLENYSNLLSVEVWKADDQVEKDPREPDKQAPSLTTPKNQPPTEERGSLFGKRLNLNT
DLVSLRQVPYKYYLYGKTLMYNSDLLSSRSCVVEKGDECGGLGEPLLYLKQEKPHAGLQYSEYN
GNGRSLSHTDAIFKHQKIKSLVQPFVCNYCDKAFSFKSLLVSHKRIHTGEKPYECNVCQKTFSH
KANLIKHQRIHTGEKPFECPECGKAFTHQSNLIVHQRAHMAKKPYGCNECGKTFAQKFELTTHQ
RIHTGERPYECNECAKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHRRTHTGEKP
YECTECGKTFSQRSTLRLHLRIHTGEKPYECAECGKAFSRKSRLSVHQRVHMG

hide sequence

RefSeq Acc Id:

XP_017456932 ⟸ XM_017601443

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQHHHLADGIPAFLYVRLFMVQSSCAFVLLCLYPNPENDGVPGQGTSVRILPTSKYMHPDYTFW
NWRDQRMSVGTQSDFNQAAMSHLASGSVSFTDVTVDFSQEEWEQLDPSQRILYMDVMLENYSNL
LSVEVWKADDQVEKDPREPDKQAPSLTTPKNQPPTEERGSLFGKRLNLNTDLVSLRQVPYKYYL
YGKTLMYNSDLLSSRSCVVEKGDECGGLGEPLLYLKQEKPHAGLQYSEYNGNGRSLSHTDAIFK
HQKIKSLVQPFVCNYCDKAFSFKSLLVSHKRIHTGEKPYECNVCQKTFSHKANLIKHQRIHTGE
KPFECPECGKAFTHQSNLIVHQRAHMAKKPYGCNECGKTFAQKFELTTHQRIHTGERPYECNEC
AKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHRRTHTGEKPYECTECGKTFSQRS
TLRLHLRIHTGEKPYECAECGKAFSRKSRLSVHQRVHMG

hide sequence

Ensembl Acc Id:

ENSRNOP00000025761 ⟸ ENSRNOT00000025761

RefSeq Acc Id:	XP_038954201 ⟸ XM_039098273
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038954204 ⟸ XM_039098276
- Peptide Label:	isoform X8
- UniProtKB:	F1LXE4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954205 ⟸ XM_039098277
- Peptide Label:	isoform X9
- UniProtKB:	A6IZA0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954206 ⟸ XM_039098278
- Peptide Label:	isoform X9
- UniProtKB:	A6IZA0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954207 ⟸ XM_039098279
- Peptide Label:	isoform X9
- UniProtKB:	A6IZA0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954199 ⟸ XM_039098271
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000081547 ⟸ ENSRNOT00000111457

RefSeq Acc Id:	NP_001387921 ⟸ NM_001400992
- UniProtKB:	A6IZA0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134270 ⟸ XM_063278200
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063134273 ⟸ XM_063278203
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063134275 ⟸ XM_063278205
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063134272 ⟸ XM_063278202
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063134276 ⟸ XM_063278206
- Peptide Label:	isoform X13
- UniProtKB:	A6IZA1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134277 ⟸ XM_063278207
- Peptide Label:	isoform X13
- UniProtKB:	A6IZA1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000112057 ⟸ ENSRNOT00000158073

Ensembl Acc Id:

ENSRNOP00000100102 ⟸ ENSRNOT00000126946

Ensembl Acc Id:

ENSRNOP00000108799 ⟸ ENSRNOT00000124269

Ensembl Acc Id:

ENSRNOP00000112194 ⟸ ENSRNOT00000125010

Ensembl Acc Id:

ENSRNOP00000111865 ⟸ ENSRNOT00000159105

Protein Domains

C2H2-type KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LXE4-F1-model_v2	AlphaFold	F1LXE4	1-402	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565049	AgrOrtholog
BioCyc Gene	G2FUF-5644	BioCyc
Ensembl Genes	ENSRNOG00000019059	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025761	ENTREZGENE
	ENSRNOT00000025761.6	UniProtKB/TrEMBL
	ENSRNOT00000111457	ENTREZGENE
	ENSRNOT00000111457.2	UniProtKB/TrEMBL
	ENSRNOT00000124269	ENTREZGENE
	ENSRNOT00000124269.1	UniProtKB/TrEMBL
	ENSRNOT00000125010	ENTREZGENE
	ENSRNOT00000125010.1	UniProtKB/TrEMBL
	ENSRNOT00000126946.1	UniProtKB/TrEMBL
	ENSRNOT00000158073	ENTREZGENE
	ENSRNOT00000158073.1	UniProtKB/TrEMBL
	ENSRNOT00000159105	ENTREZGENE
	ENSRNOT00000159105.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
NCBI Gene	498952	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 672-RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 771	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-H2C2_2	UniProtKB/TrEMBL
PhenoGen	Zfp1	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019059	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I5ZS86_RAT	UniProtKB/TrEMBL
	A0ABK0LAA6_RAT	UniProtKB/TrEMBL
	A0ABK0LX95_RAT	UniProtKB/TrEMBL
	A0ABK0M1X5_RAT	UniProtKB/TrEMBL
	A0ABK0M426_RAT	UniProtKB/TrEMBL
	A0ABK0M7Y1_RAT	UniProtKB/TrEMBL
	A6IZA0	ENTREZGENE, UniProtKB/TrEMBL
	A6IZA1	ENTREZGENE, UniProtKB/TrEMBL
	F1LXE4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Zfp1	zinc finger protein 1	RGD1565049_predicted	similar to Zfp1 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565049_predicted	similar to Zfp1 protein (predicted)	LOC498952	similar to Zfp1 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498952	similar to Zfp1 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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